mRNA_P-wetherbeei_contig18685.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: A0A847P0Y4_9BACT (HPF/RaiA family ribosome-associated protein n=1 Tax=Fibrobacter sp. TaxID=35828 RepID=A0A847P0Y4_9BACT) HSP 1 Score: 93.6 bits (231), Expect = 2.420e-21 Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 1
Query: 1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPG--CSVKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHNHDEVEVV 366
MQ PLEI F ++ +E L+ IR + AK++++ GH+NSCRV+VE+VQ H G V++++ +PP ELVVS+D S D H A I AF+A Q+K+ K GDVK H + +V+ V
Sbjct: 1 MQVPLEITFRDVEKTEELEELIRRKAAKLDRIFGHINSCRVIVEKVQKHQSSGQPYRVRLDIKIPPGHELVVSRDPSKGDL--HLDVAAEIRWAFEAAARQIKELVDKLNGDVKVHPYQQVQGV 122
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: A0A1I6GYH3_9GAMM (Cold shock protein, CspA family n=1 Tax=Marinobacter daqiaonensis TaxID=650891 RepID=A0A1I6GYH3_9GAMM) HSP 1 Score: 87.0 bits (214), Expect = 1.370e-18 Identity = 47/117 (40.17%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPG--CSVKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHN 345
MQ PLE+KF +D ++ ++ IR R +++++ H+ SCRVVVER Q H + G V++EV +PP+K+LV K+ + D H R +I +AF+A+E Q++K ++Q+G VK H+
Sbjct: 1 MQIPLEVKFADVDHTQWVEDYIRERADRLDRMCDHLMSCRVVVERAQHHHNTGNPYRVRVEVTLPPKKDLVSDKEGTVADP--HVQLRPIIRKAFEAIEKQIEKETARQRGAVKFHD 115
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: UPI000376DAA8 (HPF/RaiA family ribosome-associated protein n=3 Tax=Methylococcaceae TaxID=403 RepID=UPI000376DAA8) HSP 1 Score: 84.0 bits (206), Expect = 1.040e-17 Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 1
Query: 1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPGCSVKIEVGVP-PRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHN 345
MQ PL+I F + S+++++ IR +VAK+EK H H+ SCRV VE H G I + + PRKELV+S++ +D H I +AF A QL+ +A Q+G+VK+HN
Sbjct: 1 MQIPLQITFRGIPHSDAVEARIREKVAKLEKFHTHIMSCRVAVESEHQHHRHGNQYHIRIDITTPRKELVISREH--HDKQAHEDIYVAIRDAFKAATRQLEDYARVQRGEVKNHN 114
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: UPI00045E840B (HPF/RaiA family ribosome-associated protein n=1 Tax=Methylomicrobium lacus TaxID=136992 RepID=UPI00045E840B) HSP 1 Score: 81.6 bits (200), Expect = 1.910e-17 Identity = 44/116 (37.93%), Postives = 71/116 (61.21%), Query Frame = 1
Query: 1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPGCSVKIEVGVP-PRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHN 345
MQ PL+I F ++ SE++++ IR +VAK+E+ H H+ SCRV VE H H G I + + P KE+V+S++ +D+ H I +AF+A QL+ + Q+G+VK+H+
Sbjct: 1 MQIPLQIIFRGIEPSEAVEARIREKVAKLERFHSHMMSCRVAVEAGHQHHHQGNLYHIRIDITTPGKEIVISREH--HDNQAHEDVYVAIRDAFNAAARQLEDYVRVQRGEVKTHS 114
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: A0A0F2QQH7_9DELT (DNA-binding protein n=1 Tax=Desulfatitalea sp. BRH_c12 TaxID=1629708 RepID=A0A0F2QQH7_9DELT) HSP 1 Score: 82.8 bits (203), Expect = 3.620e-17 Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 1
Query: 1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVER---VQFHGHPGCSVKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHNHDE 354
M+ P+EI + + S+S+DS IR + AKM+++ H+ SCRV +E+ Q G P V+IE+ VPP LV ++S+ D HN +A+I +AFDA+ QL+K +Q G +KSH E
Sbjct: 1 MKVPIEITYRDVAKSDSIDSLIREKAAKMDQICDHITSCRVAIEKPHEFQRSGQP-YRVRIEMRVPPGHVLVAKRESTEGDI--HNDLQAIIRDAFDAIRRQLQKVNRQQHGQIKSHPEQE 118
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: H8GM11_METAL (Ribosome-associated protein Y (PSrp-1) n=2 Tax=Methylomicrobium TaxID=39773 RepID=H8GM11_METAL) HSP 1 Score: 79.7 bits (195), Expect = 1.050e-16 Identity = 42/116 (36.21%), Postives = 70/116 (60.34%), Query Frame = 1
Query: 1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPGCSVKIEVGVP-PRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHN 345
MQ PL+I F ++ SE++++ IR +VAK+++ H H+ SCRV VE H H G I + + P KE+V S++ +++ H I +AF+A QL+ + Q+G+VK+H+
Sbjct: 1 MQIPLQIIFRGIEPSEAVEARIREKVAKLDRFHSHIMSCRVAVESGHHHHHQGNLYHIRIDITTPGKEIVTSRER--HENQAHEDVYVAIRDAFNAATRQLEDYVRMQRGEVKNHS 114
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: A0A7C1YLR7_9GAMM (HPF/RaiA family ribosome-associated protein n=1 Tax=Sedimenticola sp. TaxID=1940285 RepID=A0A7C1YLR7_9GAMM) HSP 1 Score: 81.3 bits (199), Expect = 1.390e-16 Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 1
Query: 1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPG--CSVKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSH 342
MQ PL+I F H+D+S +++ +R A++EK HG + SCRVV+E H H G V+I++ VP KELVV++ + H I +AF+ M+ QL+ A +Q+G VK H
Sbjct: 1 MQIPLQITFRHVDSSAAVEQRVREEAARLEKFHGQIMSCRVVLESPHVHHHKGKLYQVRIDLKVP-GKELVVTRGHGQ--DHAHEDIYVAIRDAFNEMQRQLEDHARRQRGHVKEH 113
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: UPI00056D28B1 (HPF/RaiA family ribosome-associated protein n=1 Tax=Myxosarcina sp. GI1 TaxID=1541065 RepID=UPI00056D28B1) HSP 1 Score: 81.3 bits (199), Expect = 2.050e-16 Identity = 44/121 (36.36%), Postives = 76/121 (62.81%), Query Frame = 1
Query: 1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPGCS--VKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSHNHDEV 357
MQ P I + +++ + ++++ I ++AK+E+ ++NSCRVVVE+ Q H H G V I++ VP +E+VV+ ++ ++ P +AVI +AFDA QLK +++Q G+ K+H EV
Sbjct: 1 MQIPPSITYRNLEKTPAIEALIEEKIAKLEQFCDYINSCRVVVEKAQEHPHSGSPYRVSIDITVPHNREIVVNHSPNT--GKQYPPLQAVIRDAFDAANRQLKDLSNEQHGERKAHPEQEV 119
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: A0A2E6QLY9_9PROT (30S ribosomal protein S30 n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QLY9_9PROT) HSP 1 Score: 79.0 bits (193), Expect = 1.130e-15 Identity = 42/117 (35.90%), Postives = 71/117 (60.68%), Query Frame = 1
Query: 1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPGCSVKIEVGVP-PRKELVVSKDSSSYDSNKHNP-TRAVIDEAFDAMEGQLKKFASKQKGDVKSHN 345
M PLE+ F +D+SE+++ IR R AK+++L+ H+ SCRV VE G +++ + + P KELVV++ + +P A++++AFDA E Q+K+F +K K + K H+
Sbjct: 1 MDVPLELSFHQVDSSETVEQRIRERAAKLDRLYDHIASCRVAVEAPHRQHRKGNQMRVRIDISVPGKELVVTRSPHRPEQTYADPDVYALVNDAFDAAERQIKEFKAKHKREAKPHD 117
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Match: UPI0019F5096E (Ribosome-associated translation inhibitor RaiA n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019F5096E) HSP 1 Score: 72.8 bits (177), Expect = 2.500e-13 Identity = 40/116 (34.48%), Postives = 74/116 (63.79%), Query Frame = 1
Query: 1 MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGHPG--CSVKIEVGVPPRKELVVSKDSSSYDSNKHNPTRAVIDEAFDAMEGQLKKFASKQKGDVKSH 342
MQ PL+I F ++++SE++++ +R + K++K + + +C VVVE H G V++++ VP R EL VS++ + + H I +AF+A+E QL+K+AS+++ +VK+H
Sbjct: 1 MQLPLQITFRNLESSEAVEAEVRKKAEKLDKRYDRIMTCHVVVEARHKQHHKGNLYHVRVDLTVPDR-ELAVSREPEEH--HAHEDVYVAIRDAFNAVERQLEKYASRRRTEVKAH 113 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18685.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig18685.2.1 >prot_P-wetherbeei_contig18685.2.1 ID=prot_P-wetherbeei_contig18685.2.1|Name=mRNA_P-wetherbeei_contig18685.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp MQNPLEIKFLHMDTSESLDSTIRARVAKMEKLHGHVNSCRVVVERVQFHGback to top mRNA from alignment at P-wetherbeei_contig18685:724..1116- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig18685.2.1 ID=mRNA_P-wetherbeei_contig18685.2.1|Name=mRNA_P-wetherbeei_contig18685.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig18685:724..1116- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig18685:724..1116- >mRNA_P-wetherbeei_contig18685.2.1 ID=mRNA_P-wetherbeei_contig18685.2.1|Name=mRNA_P-wetherbeei_contig18685.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig18685:724..1116- (Phaeothamnion wetherbeei SAG_119_79)back to top |