mRNA_P-wetherbeei_contig18668.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18668.1.1
Unique NamemRNA_P-wetherbeei_contig18668.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18668.1.1 vs. uniprot
Match: A0A6H5KZD4_9PHAE (DUF4201 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZD4_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.650e-33
Identity = 96/269 (35.69%), Postives = 142/269 (52.79%), Query Frame = 1 
Query:  283 VCERIKEAALNRINAGRADAGLSLLVRDEALCDAADAHCEAMSAFDYVSHWDPAGNKPYQRYADASGGHHLSETLYGAPLDASDDEESAATRQILTLIDARLAA-ARAAAATAGEHVLAPEHTHVGVGIGAWGGRLRYVELYADHYVELTFDGAGSSVMAGEAAAY----------GPCACIAYLEPPPQPLTAEELRAHFTGPYEDGPAA--------SRVAAVAPWDMRFDPVT-GAFSVPLQLPFSEAGSCYVQLFLSPDAESVPY 1029
            +  R++E A+  INA      L LL  DEAL   A  HC  M   D++SHWD AG KPYQRY+D + G H+SE ++   ++ + ++E     +I   I+ RL A A         H+L  +HTH+G+G+     RLRY E+YAD Y+EL    A  SV    + ++          GP AC+ + +P   PLT  EL+  F+GPY D   +        ++V+ + PW M  D +  G F +P+ +   EAG+ YVQ+ +  D  S+PY
Sbjct:  112 LYRRVRELAVEAINA------LELLSPDEALAVPAMTHCRRMCEHDFLSHWDMAGRKPYQRYSDFAYGQHVSEDVFEFRVNEAAEDEI--MNRIKECIEGRLGADALDQEGGKTNHLLDNKHTHIGIGVHVVDDRLRYAEVYADRYLELLDSPAELSVADAASGSHISVQMTSSDVGPYACLVFHDPVATPLTVGELQQQFSGPYSDFTTSQTKAWCFIAKVSIIWPWQM--DVLEDGVFGIPVSVSPIEAGTYYVQILVREDPGSIPY 370
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BLAST of mRNA_P-wetherbeei_contig18668.1.1 vs. uniprot
Match: UPI001B8C7395 (CAP domain-containing protein n=1 Tax=Chloracidobacterium validum TaxID=2821543 RepID=UPI001B8C7395)

HSP 1 Score: 58.9 bits (141), Expect = 3.670e-6
Identity = 56/207 (27.05%), Postives = 85/207 (41.06%), Query Frame = 1 
Query:  262 QNGMDKLVCERIKEAALNRINAGRADAGLSLLVRDEALCDAADAHCEAMSAFDYVSHWDPAGNKPYQRYADASGGHHLSET---LYGAPLDASDDEESAATRQILTLIDARLAAARAAAATAGEHVLAPEHTHVGVGIGAWGGRLRYVELYADHYVELT-----------FDGAGSSVMAGEAAAYGPCACIAYLEPPPQPLTAEEL 840
            ++G   L  + ++   L  INA R   G   +  DE     A+AH   M+ ++Y+SHW+  G KPY RY    G  + +E    L G    A+ D   A   Q+   +            T    +L PEHTH+G+G    G  LR  + +   YV +                G  V   E   Y     + + EP P+P+T ++L
Sbjct:   35 KSGQATLDVDFLRHELLAVINAQRERVGAPPVALDELANQVAEAHARDMAEYNYLSHWNRDGWKPYMRYGLRGGTDYSAENVSMLSGLSPRATLDSIKAELLQLHQSMHDETPPNDGHRRT----ILNPEHTHLGLGFAVVGKELRMAQEFLSRYVHVEPLPTRARPGDRLSVVGQVVNPAEMLFYS---AMVHHEPLPRPMTLDQL 234
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BLAST of mRNA_P-wetherbeei_contig18668.1.1 vs. uniprot
Match: A0A5M4AD53_9BACT (SCP domain-containing protein n=2 Tax=Prolixibacter TaxID=314318 RepID=A0A5M4AD53_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 7.290e-6
Identity = 55/204 (26.96%), Postives = 84/204 (41.18%), Query Frame = 1 
Query:  421 YVSHWDPAGNKPYQRYADASGGHHLSETLYGAPLDASDDEESAATRQILTLIDARLAAARAAAATAGEHVLAPEHTHVGVGIGAWGGRLRYVELYADHYVELTFDGAGSSVMAGEAAAYG---------PCACIAYLEPPPQPLTAEELRAHFTGPYEDGPAASRVAAVAPWDMRFDPVTGAFSVPLQLPFSEAGSCYVQLFLS 1005
            +  HW+  G KPY RYA ASG  H+SE             E     +++    +     +A      + V+ P H +VG+G        RY E + D Y  L F     ++  GE A            P A I Y EPP +P+T +++  +    Y D    SR  A   W  +         + L+  F++ G  Y+Q++LS
Sbjct:  114 FFGHWNLEGEKPYHRYAFASGTDHVSENASALITTGRISPEFDDIVKLMENAHSGFMKEKAPNDGHKQTVIGPFHNYVGIGTAWCEHGFRYYEEFIDRY--LQFHPFRQTIKKGETATIKFRLLDKKLYPYAIIGYYEPPLKPMTRDQI--NRLNSYND---FSRDIAFQLWPWQIPSANRDGYITLRKRFNKKGLYYIQIYLS 310
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18668.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KZD4_9PHAE1.650e-3335.69DUF4201 domain-containing protein n=2 Tax=Ectocarp... [more]
UPI001B8C73953.670e-627.05CAP domain-containing protein n=1 Tax=Chloracidoba... [more]
A0A5M4AD53_9BACT7.290e-626.96SCP domain-containing protein n=2 Tax=Prolixibacte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18668contigP-wetherbeei_contig18668:103..1299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FPR3
Preferred nameCCDC96
PFAMsDUF4201
Model size1029
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.36e-37
EggNOG OGs28MPJ@1|root,2QS75@2759|Eukaryota
Ec32 ortholog descriptionCAP domain
Ec32 orthologEc-20_001040.1
DescriptionDomain of unknown function (DUF4201)
Cds size1023
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186151.9181504-UTR-P-wetherbeei_contig18668:102..1081683186151.9181504-UTR-P-wetherbeei_contig18668:102..108Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18668 103..108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186151.9268951-CDS-P-wetherbeei_contig18668:108..7171683186151.9268951-CDS-P-wetherbeei_contig18668:108..717Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18668 109..717 +
1683186151.9342597-CDS-P-wetherbeei_contig18668:792..9251683186151.9342597-CDS-P-wetherbeei_contig18668:792..925Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18668 793..925 +
1683186151.9417353-CDS-P-wetherbeei_contig18668:1018..12991683186151.9417353-CDS-P-wetherbeei_contig18668:1018..1299Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18668 1019..1299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18668.1.1prot_P-wetherbeei_contig18668.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18668 109..1299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18668.1.1

>prot_P-wetherbeei_contig18668.1.1 ID=prot_P-wetherbeei_contig18668.1.1|Name=mRNA_P-wetherbeei_contig18668.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=341bp
MEDPSDGGDDASRQSEVDQGQEGAADADSHEDASADGNGGTKVVEGLTVD
AAEPESDVPAPAGHGDGFSDREEDGDDGGVENGPPQNGMDKLVCERIKEA
ALNRINAGRADAGLSLLVRDEALCDAADAHCEAMSAFDYVSHWDPAGNKP
YQRYADASGGHHLSETLYGAPLDASDDEESAATRQILTLIDARLAAARAA
AATAGEHVLAPEHTHVGVGIGAWGGRLRYVELYADHYVELTFDGAGSSVM
AGEAAAYGPCACIAYLEPPPQPLTAEELRAHFTGPYEDGPAASRVAAVAP
WDMRFDPVTGAFSVPLQLPFSEAGSCYVQLFLSPDAESVPY
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mRNA from alignment at P-wetherbeei_contig18668:103..1299+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18668.1.1 ID=mRNA_P-wetherbeei_contig18668.1.1|Name=mRNA_P-wetherbeei_contig18668.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1197bp|location=Sequence derived from alignment at P-wetherbeei_contig18668:103..1299+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGGAATGGAGGATCCGAGCGACGGCGGGGACGATGCCTCACGTCAGAG
CGAGGTCGATCAGGGCCAAGAAGGGGCGGCGGACGCCGACAGCCATGAGG
ATGCAAGCGCAGATGGAAACGGAGGCACCAAAGTAGTAGAAGGCCTCACA
GTCGACGCTGCAGAGCCAGAAAGCGACGTGCCAGCTCCCGCTGGGCATGG
CGACGGCTTTTCTGACCGTGAGGAGGACGGCGACGACGGCGGTGTCGAGA
ACGGCCCTCCCCAGAACGGGATGGATAAGTTGGTGTGCGAGCGCATCAAG
GAGGCAGCACTTAACCGTATCAACGCCGGCAGAGCTGACGCAGGTCTCTC
GCTGCTCGTGCGCGACGAAGCGCTTTGTGACGCAGCCGACGCGCACTGCG
AGGCGATGAGCGCATTCGACTATGTCAGCCATTGGGATCCAGCAGGCAAC
AAGCCTTACCAACGCTACGCCGACGCAAGCGGCGGCCACCATCTTTCGGA
AACGCTATACGGCGCGCCGCTCGACGCCAGCGACGACGAAGAATCTGCCG
CAACGAGACAGATTCTCACTCTCATCGACGCGCGCCTCGCCGCTGCCCGC
GCCGCGGCAGCGACCGTGGCCACTGCAGCCGCCGGTGGAGGCAGCGGCGG
CGATGCGGAGGAAGGCGATGACGGCGGCGAAGCGGCAGAGGCCGGCGAGC
ATGTGCTGGCGCCAGAGCACACGCACGTCGGCGTCGGCATCGGTGCATGG
GGCGGCCGGCTCCGTTACGTTGAACTCTACGCCGACCATTACGTTGAATT
GACATTCGACGGCGCCGGAAGCTGTGCCGAACCGAACGCCACCTTCGTTC
TCCGGGGCCGCATCACTGCACCAGCGGCGCCTGCGGCGGCGGCGGCAGCG
GCGGCGGCGGCGACAGCGGTGATGGCGGGAGAAGCGGCAGCCTACGGTCC
TTGCGCCTGCATCGCCTACCTGGAGCCGCCGCCGCAGCCTCTTACTGCCG
AAGAACTGCGAGCGCACTTCACGGGGCCATACGAGGATGGTCCGGCGGCG
TCACGGGTGGCAGCGGTGGCGCCGTGGGACATGCGGTTCGACCCGGTCAC
CGGCGCCTTCAGCGTGCCGCTGCAGCTGCCGTTCTCCGAGGCGGGAAGCT
GCTATGTCCAGCTGTTCCTGTCGCCGGATGCCGAAAGCGTGCCGTAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18668:103..1299+

>mRNA_P-wetherbeei_contig18668.1.1 ID=mRNA_P-wetherbeei_contig18668.1.1|Name=mRNA_P-wetherbeei_contig18668.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1023bp|location=Sequence derived from alignment at P-wetherbeei_contig18668:103..1299+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGATCCGAGCGACGGCGGGGACGATGCCTCACGTCAGAGCGAGGT
CGATCAGGGCCAAGAAGGGGCGGCGGACGCCGACAGCCATGAGGATGCAA
GCGCAGATGGAAACGGAGGCACCAAAGTAGTAGAAGGCCTCACAGTCGAC
GCTGCAGAGCCAGAAAGCGACGTGCCAGCTCCCGCTGGGCATGGCGACGG
CTTTTCTGACCGTGAGGAGGACGGCGACGACGGCGGTGTCGAGAACGGCC
CTCCCCAGAACGGGATGGATAAGTTGGTGTGCGAGCGCATCAAGGAGGCA
GCACTTAACCGTATCAACGCCGGCAGAGCTGACGCAGGTCTCTCGCTGCT
CGTGCGCGACGAAGCGCTTTGTGACGCAGCCGACGCGCACTGCGAGGCGA
TGAGCGCATTCGACTATGTCAGCCATTGGGATCCAGCAGGCAACAAGCCT
TACCAACGCTACGCCGACGCAAGCGGCGGCCACCATCTTTCGGAAACGCT
ATACGGCGCGCCGCTCGACGCCAGCGACGACGAAGAATCTGCCGCAACGA
GACAGATTCTCACTCTCATCGACGCGCGCCTCGCCGCTGCCCGCGCCGCG
GCAGCGACCGCCGGCGAGCATGTGCTGGCGCCAGAGCACACGCACGTCGG
CGTCGGCATCGGTGCATGGGGCGGCCGGCTCCGTTACGTTGAACTCTACG
CCGACCATTACGTTGAATTGACATTCGACGGCGCCGGAAGCTCGGTGATG
GCGGGAGAAGCGGCAGCCTACGGTCCTTGCGCCTGCATCGCCTACCTGGA
GCCGCCGCCGCAGCCTCTTACTGCCGAAGAACTGCGAGCGCACTTCACGG
GGCCATACGAGGATGGTCCGGCGGCGTCACGGGTGGCAGCGGTGGCGCCG
TGGGACATGCGGTTCGACCCGGTCACCGGCGCCTTCAGCGTGCCGCTGCA
GCTGCCGTTCTCCGAGGCGGGAAGCTGCTATGTCCAGCTGTTCCTGTCGC
CGGATGCCGAAAGCGTGCCGTAC
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