mRNA_P-wetherbeei_contig1820.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1820.1.1
Unique NamemRNA_P-wetherbeei_contig1820.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1820.1.1 vs. uniprot
Match: A0A2J6PLN7_9HELO (SAC3_GANP domain-containing protein n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6PLN7_9HELO)

HSP 1 Score: 65.1 bits (157), Expect = 3.880e-9
Identity = 48/162 (29.63%), Postives = 73/162 (45.06%), Query Frame = 1
Query:    1 GVCEEMCNPKQMAERPLPSHNGVSWHETIPGDRDNEEKPPMDPKGMVKLFRRNAAGREAETPADLRTAGALERSVAYLMKTMDATTRFENGEAILYKSAHDFVWIRLRSVLSDVSTQQFSAPEDLAPAIRAIEMSVAWHLSEYHRSFRFPAIKNRKFVAEQE 486
            G CE+MC   + A R             + G  D  E+    PK MVK   R+AAG++A  P D+RT GA+ R+V +L   +       N E     S H FVW R R++  D       +  +LA  +  +E    +H++  H+  +   +   KF  +QE
Sbjct:  359 GTCEDMCPEFERASR------------IMDGRIDKNEE--GGPKNMVKALARSAAGQDAPLPNDIRTTGAMRRTVDHLFHNI-----LGNSEL---GSVHGFVWDRTRAIRRDFVFHSSMSSAELADQVYCLEHITRFHVTALHQMSKLN-LSADKFSEQQE 497          
BLAST of mRNA_P-wetherbeei_contig1820.1.1 vs. uniprot
Match: F0XRB1_GROCL (Leucine permease transcriptional regulator n=1 Tax=Grosmannia clavigera (strain kw1407 / UAMH 11150) TaxID=655863 RepID=F0XRB1_GROCL)

HSP 1 Score: 61.2 bits (147), Expect = 8.530e-8
Identity = 43/160 (26.88%), Postives = 73/160 (45.62%), Query Frame = 1
Query:    1 GVCEEMCNPKQMAERPLPSHNGVSWHETIPGDRDNEEKPPMDPKGMVKLFRRNAAGREAETPADLRTAGALERSVAYLMKTMDATTRFENGEAILYKSAHDFVWIRLRSVLSDVSTQQFSAPEDLAPAIRAIEMSVAWHLSEYHRSFRFPAIKNRKFVAE 480
            G+CEEMC   +   R +  ++     +T   D      P +    MVK   R+AAG+EA  P D+R+ GAL+R++ YL+ T+        G+     + H+F+W R R++  D          ++   +  +E    +H +  H+      +  R F AE
Sbjct:  904 GICEEMCPEFEKMSR-MVQYDVKMAEKTEGPDGTMWAAPEL----MVKALARSAAGQEAPLPMDVRSVGALKRTLDYLVDTV-------LGDDSRLATTHNFLWDRTRAIRRDFVFHSSMTASEMGEQVYCLETITRFHATALHQ------LSRRGFAAE 1045          
BLAST of mRNA_P-wetherbeei_contig1820.1.1 vs. uniprot
Match: A0A507DTM9_9FUNG (Uncharacterized protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DTM9_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 1.320e-6
Identity = 40/123 (32.52%), Postives = 61/123 (49.59%), Query Frame = 1
Query:    1 GVCEEMCNPKQMAERPLPSHNGVSWHETIPGDRDNEEKPPMDPKGMVKLFRRNAAGREAETPADLRTAGALERSVAYLMKTMDATTRFENGEAILYKSAHDFVWIRLRSVLSDVSTQQFSAPE 369
            G CE+ C   +  ER   S + +   E +PG    +         MVK F+R+AAG     P D+RT GAL RS+ +L+ ++ A    +NG  + Y     F W R R++ +D + Q +  PE
Sbjct:  310 GECEDFCPEYERWERESQSGD-IFRFERVPGTEITDHS------RMVKRFKRSAAGDAQVLPCDVRTPGALVRSLDFLIHSVIA----DNGLVLPYY----FCWDRTRAIRNDFTLQNYCGPE 417          
BLAST of mRNA_P-wetherbeei_contig1820.1.1 vs. uniprot
Match: A0A835L7M0_SPOEX (PCI domain-containing protein n=5 Tax=Spodoptera TaxID=7106 RepID=A0A835L7M0_SPOEX)

HSP 1 Score: 57.8 bits (138), Expect = 1.320e-6
Identity = 48/167 (28.74%), Postives = 80/167 (47.90%), Query Frame = 1
Query:    1 GVCEEMCNPKQMAERPLPSHNGVSWHETIPGDRDNEEKPPMDPKGMVKLFRRNAAGREAETPADLRTAGALERSVAYLMKTMDATTRFENGEAILYKSAHDFVWIRLRSVLSDVSTQQFSAPEDLAPAIRAIEMSVAWHLSEYHRSFRFPAIKNRKFVAEQEQANMT 501
            G C++MC  K++ +R   S + V   ET+  D D E    ++P   VK + R++A +E     +LR AG L R+ AYL+  +  T R    +  L    H F+W RLR +  D++ Q     E +      +EM   +H    H + R   +++ +F  +    N+T
Sbjct:  221 GTCQDMCPEKELLQRQ--SEHQVMTLETVL-DSDGE----LEPWRAVKQYSRSSADQEIPMCYELRPAGVLMRTCAYLLHEIADTKR----QVSLADWFH-FMWDRLRGIRKDITQQALCCAESIC----LVEMCARFHA---HCAARLADLEHTQFDQKLNTDNLT 368          
BLAST of mRNA_P-wetherbeei_contig1820.1.1 vs. uniprot
Match: A0A136J7X0_9PEZI (SAC3/GANP/Nin1/mts3/eIF-3 p25 family-domain-containing protein n=1 Tax=Microdochium bolleyi TaxID=196109 RepID=A0A136J7X0_9PEZI)

HSP 1 Score: 57.0 bits (136), Expect = 2.390e-6
Identity = 42/167 (25.15%), Postives = 78/167 (46.71%), Query Frame = 1
Query:    1 GVCEEMCNPKQMAERPLPSHNGVSWHETIPGDRDNEEKPPMDPKGMVKLFRRNAAGREAETPADLRTAGALERSVAYLMKTMDATTRFENGEAILYKSAHDFVWIRLRSVLSDVSTQQFSAPED-LAPAIRAIEMSVAWHLSEYHRSFRFPAIKNRKFVAEQEQANM 498
            G+CE+MC   +   R +         E I G+  N+    +    MV    R++AG++A  P D+R+ GAL+R++ Y++  +     F         + H+F+W R R++  D   Q+++   D +   I  +E    +H++  H   + P    + F A+QE   +
Sbjct:  169 GICEDMCPAWERITRIVQHDVKREEREDINGE--NQANIEL----MVTRHARSSAGQDAPLPMDVRSPGALKRTLKYMIDELIPEDHF-------LPARHNFLWDRTRAIRKDFIYQEYAMGHDEMQDYIYCLETIARFHVTALHLLTQ-PDFAGKDFSAQQENEQL 321          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1820.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2J6PLN7_9HELO3.880e-929.63SAC3_GANP domain-containing protein n=1 Tax=Hyalos... [more]
F0XRB1_GROCL8.530e-826.88Leucine permease transcriptional regulator n=1 Tax... [more]
A0A507DTM9_9FUNG1.320e-632.52Uncharacterized protein n=2 Tax=Synchytrium endobi... [more]
A0A835L7M0_SPOEX1.320e-628.74PCI domain-containing protein n=5 Tax=Spodoptera T... [more]
A0A136J7X0_9PEZI2.390e-625.15SAC3/GANP/Nin1/mts3/eIF-3 p25 family-domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1820contigP-wetherbeei_contig1820:1245..1826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog64363.EME43174
Preferred nameSAC3
PFAMsSAC3,SAC3_GANP
Model size510
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
GOsGO:0000278,GO:0000956,GO:0000972,GO:0000973,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0008298,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0022613,GO:0030029,GO:0031123,GO:0031124,GO:0031503,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0033554,GO:0034613,GO:0034641,GO:0034655,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070390,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071033,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:1901360,GO:1901361,GO:1901575
Exons2
Evalue5.19e-12
EggNOG OGsCOG5079@1|root,KOG1860@2759|Eukaryota,38FKX@33154|Opisthokonta,3NY7Y@4751|Fungi,3QQY3@4890|Ascomycota,1ZZPE@147541|Dothideomycetes,3MFHQ@451867|Dothideomycetidae
DescriptionSAC3/GANP family
Cds size495
COG categoryDU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.10282-UTR-P-wetherbeei_contig1820:1244..12591683186139.10282-UTR-P-wetherbeei_contig1820:1244..1259Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1820 1245..1259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186139.1141057-CDS-P-wetherbeei_contig1820:1259..15231683186139.1141057-CDS-P-wetherbeei_contig1820:1259..1523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1820 1260..1523 +
1683186139.123327-CDS-P-wetherbeei_contig1820:1595..18261683186139.123327-CDS-P-wetherbeei_contig1820:1595..1826Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1820 1596..1826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1820.1.1prot_P-wetherbeei_contig1820.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1820 1260..1826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1820.1.1

>prot_P-wetherbeei_contig1820.1.1 ID=prot_P-wetherbeei_contig1820.1.1|Name=mRNA_P-wetherbeei_contig1820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=165bp
MCNPKQMAERPLPSHNGVSWHETIPGDRDNEEKPPMDPKGMVKLFRRNAA
GREAETPADLRTAGALERSVAYLMKTMDATTRFENGEAILYKSAHDFVWI
RLRSVLSDVSTQQFSAPEDLAPAIRAIEMSVAWHLSEYHRSFRFPAIKNR
KFVAEQEQANMTALA
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mRNA from alignment at P-wetherbeei_contig1820:1245..1826+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1820.1.1 ID=mRNA_P-wetherbeei_contig1820.1.1|Name=mRNA_P-wetherbeei_contig1820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig1820:1245..1826+ (Phaeothamnion wetherbeei SAG_119_79)
GGGGTGTGTGAAGAAATGTGCAACCCCAAGCAGATGGCCGAGCGGCCTCT CCCGTCCCACAACGGTGTCTCCTGGCACGAAACGATCCCGGGCGACAGAG ACAACGAAGAGAAGCCGCCCATGGACCCAAAGGGCATGGTGAAGTTATTC AGACGGAACGCGGCAGGCAGGGAAGCGGAGACCCCCGCCGACCTGCGAAC GGCGGGAGCGTTGGAGCGTAGCGTGGCGTATTTAATGAAGACGATGGACG CGACGACCCGCTTCGAGAACGGCGAGGCCGTGGACACGCGCGCCCACCGC TGGCTGAGGCGTCTTGGGCACGCAAGCAAGCCGATCGAGGAGCAGAAGGA GATACTCTACAAATCTGCCCACGATTTTGTGTGGATCCGCCTTCGGTCTG TCCTGAGCGATGTGTCGACCCAGCAGTTCAGCGCCCCGGAAGACTTGGCC CCCGCGATTCGGGCCATCGAGATGTCTGTGGCGTGGCACCTCAGCGAATA CCACCGCTCGTTCCGGTTCCCCGCTATTAAAAACCGGAAGTTCGTAGCAG AGCAGGAGCAGGCCAACATGACGGCCCTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1820:1245..1826+

>mRNA_P-wetherbeei_contig1820.1.1 ID=mRNA_P-wetherbeei_contig1820.1.1|Name=mRNA_P-wetherbeei_contig1820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=495bp|location=Sequence derived from alignment at P-wetherbeei_contig1820:1245..1826+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCAACCCCAAGCAGATGGCCGAGCGGCCTCTCCCGTCCCACAACGG
TGTCTCCTGGCACGAAACGATCCCGGGCGACAGAGACAACGAAGAGAAGC
CGCCCATGGACCCAAAGGGCATGGTGAAGTTATTCAGACGGAACGCGGCA
GGCAGGGAAGCGGAGACCCCCGCCGACCTGCGAACGGCGGGAGCGTTGGA
GCGTAGCGTGGCGTATTTAATGAAGACGATGGACGCGACGACCCGCTTCG
AGAACGGCGAGGCCATACTCTACAAATCTGCCCACGATTTTGTGTGGATC
CGCCTTCGGTCTGTCCTGAGCGATGTGTCGACCCAGCAGTTCAGCGCCCC
GGAAGACTTGGCCCCCGCGATTCGGGCCATCGAGATGTCTGTGGCGTGGC
ACCTCAGCGAATACCACCGCTCGTTCCGGTTCCCCGCTATTAAAAACCGG
AAGTTCGTAGCAGAGCAGGAGCAGGCCAACATGACGGCCCTGGCC
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