mRNA_P-wetherbeei_contig18048.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18048.1.1
Unique NamemRNA_P-wetherbeei_contig18048.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI002011F7D8 (L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0160 TaxID=2807662 RepID=UPI002011F7D8)

HSP 1 Score: 227 bits (578), Expect = 2.710e-74
Identity = 115/137 (83.94%), Postives = 124/137 (90.51%), Query Frame = 1
Query:   34 RLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
            RL  AA I++  LA  PARA VVVQIDKSSQRMAVS+DGATRYSWPVSTGR+GYGTPSGVF+PQSMHR YFSRKYYNSPMP+AIFF+YGFAIHGT DI RLGG ASHGCVRLHPSHAAALFALVQR+G RNTRI+IN
Sbjct:    4 RLPFAAAILISALASSPARAAVVVQIDKSSQRMAVSIDGATRYSWPVSTGRSGYGTPSGVFRPQSMHRHYFSRKYYNSPMPHAIFFHYGFAIHGTTDIKRLGGRASHGCVRLHPSHAAALFALVQRNGQRNTRIQIN 140          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001BA46D2F (L,D-transpeptidase n=9 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA46D2F)

HSP 1 Score: 224 bits (571), Expect = 3.610e-73
Identity = 115/144 (79.86%), Postives = 124/144 (86.11%), Query Frame = 1
Query:   13 MKLLFGSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
            MK   G RL   A I M  LAL PARA VVVQIDKSSQRMAVS+DGATRYSWPVSTGR+GYGTPSGVF+PQ M R Y+SRKYYNSPMP+AIFF++GFAIHGT DI RLGG ASHGCVRLHPSHAAALFAL+QRSG RNTRI+IN
Sbjct:    1 MKFRLGVRLSFVAAIFMSALALSPARAAVVVQIDKSSQRMAVSIDGATRYSWPVSTGRSGYGTPSGVFRPQWMSRHYYSRKYYNSPMPHAIFFHHGFAIHGTTDIRRLGGRASHGCVRLHPSHAAALFALIQRSGQRNTRIQIN 144          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001FEE1024 (L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. S69 TaxID=1641856 RepID=UPI001FEE1024)

HSP 1 Score: 223 bits (567), Expect = 1.130e-72
Identity = 108/133 (81.20%), Postives = 123/133 (92.48%), Query Frame = 1
Query:   46 AAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
            + V+++ GLAL PARA+VVVQIDKS+QRMAVSVDG+ RY+WPVSTGR+GYGTP+G F PQSM RRYFSRKYYN+PMP+AIFFYYGFAIHGTNDI +LGG ASHGCVRLHPSHAAALFALV+ SGPRNTRIEI+
Sbjct:    3 SVVVLLSGLALTPARAEVVVQIDKSAQRMAVSVDGSMRYNWPVSTGRDGYGTPNGTFHPQSMARRYFSRKYYNAPMPHAIFFYYGFAIHGTNDISQLGGPASHGCVRLHPSHAAALFALVEHSGPRNTRIEIS 135          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: A0A525JG63_BRASZ (L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525JG63_BRASZ)

HSP 1 Score: 223 bits (569), Expect = 1.240e-72
Identity = 115/151 (76.16%), Postives = 129/151 (85.43%), Query Frame = 1
Query:    1 QGIIMKLLFG---SRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
            +G IM  L G   +RL  A+ +++ GLAL P RA+VVVQIDKSSQRMAVSVDG  RY+WPVSTGR+GYGTPSG F PQSM R YFSRKYYN+PMP+AIFFYYGFAIHGTNDI RLGG ASHGCVRLHPSHAAALFALV+R+G RNTRIEI+
Sbjct:    9 RGTIMNWLSGMGLARLAFASFVMVSGLALTPVRAEVVVQIDKSSQRMAVSVDGEMRYNWPVSTGRDGYGTPSGTFHPQSMARHYFSRKYYNAPMPHAIFFYYGFAIHGTNDISRLGGPASHGCVRLHPSHAAALFALVERNGSRNTRIEIS 159          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001C0142C1 (L,D-transpeptidase n=4 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C0142C1)

HSP 1 Score: 212 bits (540), Expect = 1.470e-68
Identity = 103/121 (85.12%), Postives = 113/121 (93.39%), Query Frame = 1
Query:   82 PARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
            PARA VVVQIDKSSQRMAVSVDG TRYSWPVSTGRNGYGTPSGVF PQ M RR++SR+YYNSPMP++IFFY+GFAIHGT ++ RLGG ASHGCVRLHPSHAAALFALV+RSGPRNTRIEI+
Sbjct:    3 PARAGVVVQIDKSSQRMAVSVDGMTRYSWPVSTGRNGYGTPSGVFHPQMMARRWYSRRYYNSPMPHSIFFYHGFAIHGTTELARLGGPASHGCVRLHPSHAAALFALVERSGPRNTRIEIS 123          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: A0A1M6SM70_9BRAD (L,D-transpeptidase catalytic domain n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M6SM70_9BRAD)

HSP 1 Score: 210 bits (534), Expect = 1.780e-67
Identity = 106/138 (76.81%), Postives = 120/138 (86.96%), Query Frame = 1
Query:   31 SRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
            +RL+ AA +VM GLA  PARADVVVQIDKS+QRMA+SVDG  R++WPVSTGR+GYGTPSG F PQ M RR+FSRKYYNSPMP+AIFFY GFAIHGT ++ RLGG ASHGCVRL PSHAA LFALV R+GPRNTRIEI+
Sbjct:   10 ARLVFAAAVVMAGLAWSPARADVVVQIDKSAQRMAMSVDGMMRHNWPVSTGRSGYGTPSGTFHPQLMARRWFSRKYYNSPMPHAIFFYGGFAIHGTYELTRLGGPASHGCVRLDPSHAATLFALVGRNGPRNTRIEIS 147          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001BA77972 (L,D-transpeptidase n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA77972)

HSP 1 Score: 209 bits (533), Expect = 2.790e-67
Identity = 105/140 (75.00%), Postives = 119/140 (85.00%), Query Frame = 1
Query:   31 SRLILAAVI---VMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEI 441
            SR +L A++   V+ G A  P RADV VQIDKSSQRMAVSVDG+ RY+WPVSTGR+GYGTP+G F PQ+M RR+FSRKYYNSPMP+AIFFYYGFAIHGT+DI RLGG ASHGCVRLHP+HAA LFALV R GPRNT I+I
Sbjct:   10 SRAVLGAILGACVLAGFAATPVRADVRVQIDKSSQRMAVSVDGSPRYNWPVSTGRSGYGTPNGTFHPQAMMRRHFSRKYYNSPMPHAIFFYYGFAIHGTSDISRLGGPASHGCVRLHPAHAATLFALVSREGPRNTTIQI 149          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI00112B339F (L,D-transpeptidase n=1 Tax=Bradyrhizobium guangdongense TaxID=1325090 RepID=UPI00112B339F)

HSP 1 Score: 209 bits (531), Expect = 4.940e-67
Identity = 103/128 (80.47%), Postives = 111/128 (86.72%), Query Frame = 1
Query:   58 VMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEI 441
            V+ GLA   ARADV VQIDKSSQRMAVSVDG+ RY WPVSTGR+GYGTP+G F PQ+M RRYFSRKYYNSPMP+AIFFYYGFAIHGT DI RLGG ASHGCVRLHP+HAA LFALV R GPRNT I+I
Sbjct:   18 VLAGLAATSARADVRVQIDKSSQRMAVSVDGSPRYDWPVSTGRSGYGTPNGTFHPQAMMRRYFSRKYYNSPMPHAIFFYYGFAIHGTTDISRLGGPASHGCVRLHPAHAATLFALVSREGPRNTTIQI 145          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: A0A1H0G5S5_9BRAD (L,D-transpeptidase catalytic domain n=1 Tax=Afipia sp. GAS231 TaxID=1882747 RepID=A0A1H0G5S5_9BRAD)

HSP 1 Score: 206 bits (523), Expect = 6.930e-66
Identity = 108/144 (75.00%), Postives = 118/144 (81.94%), Query Frame = 1
Query:   13 MKLLFGSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 444
            MK  +G  LI A  +V+   A  PA ADVVVQIDKSSQRMAVSVDG  RY+WPVSTG  GYGTPSGVF PQSM R +FSRKYYNSPMP++IF YYGFAIHGTNDI RLGG ASHGCVRLHPSHAAAL+ LVQR+G  +TRIEIN
Sbjct:    1 MKFAWGKALIAAVAMVVSSWA--PASADVVVQIDKSSQRMAVSVDGVPRYNWPVSTGGGGYGTPSGVFHPQSMARMHFSRKYYNSPMPHSIFSYYGFAIHGTNDIARLGGPASHGCVRLHPSHAAALYGLVQRNGAGSTRIEIN 142          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001BA7DCAA (L,D-transpeptidase n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA7DCAA)

HSP 1 Score: 205 bits (522), Expect = 9.850e-66
Identity = 106/143 (74.13%), Postives = 118/143 (82.52%), Query Frame = 1
Query:   13 MKLLFGSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEI 441
            MKLL G RL LAA  +   L   PA A VVVQI KSSQRM+VSVDGA RYSWPVSTGR GYGTPSG F PQ M RR++S+KYYNSPMP++IFFYYG+AIHGT D+GRLGG ASHGCVRLHPSHAA L+ALV+R+G  NTRIEI
Sbjct:    1 MKLLSGVRLALAAAFI--SLLAAPAHAGVVVQISKSSQRMSVSVDGAPRYSWPVSTGRRGYGTPSGTFHPQMMARRWYSKKYYNSPMPHSIFFYYGYAIHGTTDLGRLGGPASHGCVRLHPSHAATLYALVERNGRGNTRIEI 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI002011F7D82.710e-7483.94L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. AUGA... [more]
UPI001BA46D2F3.610e-7379.86L,D-transpeptidase n=9 Tax=Bradyrhizobium TaxID=37... [more]
UPI001FEE10241.130e-7281.20L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. S69 ... [more]
A0A525JG63_BRASZ1.240e-7276.16L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. TaxI... [more]
UPI001C0142C11.470e-6885.12L,D-transpeptidase n=4 Tax=unclassified Bradyrhizo... [more]
A0A1M6SM70_9BRAD1.780e-6776.81L,D-transpeptidase catalytic domain n=1 Tax=Bradyr... [more]
UPI001BA779722.790e-6775.00L,D-transpeptidase n=2 Tax=Bradyrhizobium TaxID=37... [more]
UPI00112B339F4.940e-6780.47L,D-transpeptidase n=1 Tax=Bradyrhizobium guangdon... [more]
A0A1H0G5S5_9BRAD6.930e-6675.00L,D-transpeptidase catalytic domain n=1 Tax=Afipia... [more]
UPI001BA7DCAA9.850e-6674.13L,D-transpeptidase n=1 Tax=Bradyrhizobium lablabi ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18048contigP-wetherbeei_contig18048:267..713 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038862.KB893863_gene4574
PFAMsYkuD
Model size447
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.01e-64
EggNOG OGsCOG1376@1|root,COG1376@2|Bacteria,1MUAB@1224|Proteobacteria,2TTXM@28211|Alphaproteobacteria,3JTW5@41294|Bradyrhizobiaceae
DescriptionL,D-transpeptidase catalytic domain
Cds size435
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.6744435-UTR-P-wetherbeei_contig18048:266..2781683186134.6744435-UTR-P-wetherbeei_contig18048:266..278Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18048 267..278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.685094-CDS-P-wetherbeei_contig18048:278..7131683186134.685094-CDS-P-wetherbeei_contig18048:278..713Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18048 279..713 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18048.1.1prot_P-wetherbeei_contig18048.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18048 279..713 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18048.1.1

>prot_P-wetherbeei_contig18048.1.1 ID=prot_P-wetherbeei_contig18048.1.1|Name=mRNA_P-wetherbeei_contig18048.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MKLLFGSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRY
SWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIH
GTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN*
back to top

mRNA from alignment at P-wetherbeei_contig18048:267..713+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18048.1.1 ID=mRNA_P-wetherbeei_contig18048.1.1|Name=mRNA_P-wetherbeei_contig18048.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=447bp|location=Sequence derived from alignment at P-wetherbeei_contig18048:267..713+ (Phaeothamnion wetherbeei SAG_119_79)
CAGGGTATCATCATGAAATTGTTATTTGGCAGCCGGCTGATATTGGCAGC CGTAATCGTCATGTGCGGATTGGCGTTGAAGCCGGCGCGGGCCGATGTCG TGGTTCAGATCGATAAATCATCGCAGCGCATGGCGGTGAGCGTCGATGGC GCGACGCGGTACAGCTGGCCGGTCTCGACCGGCCGCAACGGCTATGGCAC GCCGAGCGGCGTGTTCCAGCCGCAATCGATGCACCGGCGTTACTTCTCCC GCAAATACTACAATTCGCCGATGCCGAACGCGATCTTCTTCTATTACGGC TTTGCGATCCACGGCACCAACGATATCGGCCGGCTCGGCGGCTCGGCCTC GCACGGATGCGTCAGGCTGCATCCGTCGCATGCGGCGGCGCTGTTCGCGC TGGTCCAGCGCAGCGGCCCGCGCAATACGCGCATCGAGATCAACTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig18048:267..713+

>mRNA_P-wetherbeei_contig18048.1.1 ID=mRNA_P-wetherbeei_contig18048.1.1|Name=mRNA_P-wetherbeei_contig18048.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig18048:267..713+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAATTGTTATTTGGCAGCCGGCTGATATTGGCAGCCGTAATCGTCAT
GTGCGGATTGGCGTTGAAGCCGGCGCGGGCCGATGTCGTGGTTCAGATCG
ATAAATCATCGCAGCGCATGGCGGTGAGCGTCGATGGCGCGACGCGGTAC
AGCTGGCCGGTCTCGACCGGCCGCAACGGCTATGGCACGCCGAGCGGCGT
GTTCCAGCCGCAATCGATGCACCGGCGTTACTTCTCCCGCAAATACTACA
ATTCGCCGATGCCGAACGCGATCTTCTTCTATTACGGCTTTGCGATCCAC
GGCACCAACGATATCGGCCGGCTCGGCGGCTCGGCCTCGCACGGATGCGT
CAGGCTGCATCCGTCGCATGCGGCGGCGCTGTTCGCGCTGGTCCAGCGCA
GCGGCCCGCGCAATACGCGCATCGAGATCAACTAA
back to top