prot_P-wetherbeei_contig18048.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig18048.1.1
Unique Nameprot_P-wetherbeei_contig18048.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length145
Homology
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI002011F7D8 (L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0160 TaxID=2807662 RepID=UPI002011F7D8)

HSP 1 Score: 227 bits (578), Expect = 2.310e-74
Identity = 115/139 (82.73%), Postives = 124/139 (89.21%), Query Frame = 0
Query:    6 GSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 144
              RL  AA I++  LA  PARA VVVQIDKSSQRMAVS+DGATRYSWPVSTGR+GYGTPSGVF+PQSMHR YFSRKYYNSPMP+AIFF+YGFAIHGT DI RLGG ASHGCVRLHPSHAAALFALVQR+G RNTRI+IN
Sbjct:    2 AKRLPFAAAILISALASSPARAAVVVQIDKSSQRMAVSIDGATRYSWPVSTGRSGYGTPSGVFRPQSMHRHYFSRKYYNSPMPHAIFFHYGFAIHGTTDIKRLGGRASHGCVRLHPSHAAALFALVQRNGQRNTRIQIN 140          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001BA46D2F (L,D-transpeptidase n=9 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA46D2F)

HSP 1 Score: 224 bits (571), Expect = 3.080e-73
Identity = 115/144 (79.86%), Postives = 124/144 (86.11%), Query Frame = 0
Query:    1 MKLLFGSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 144
            MK   G RL   A I M  LAL PARA VVVQIDKSSQRMAVS+DGATRYSWPVSTGR+GYGTPSGVF+PQ M R Y+SRKYYNSPMP+AIFF++GFAIHGT DI RLGG ASHGCVRLHPSHAAALFAL+QRSG RNTRI+IN
Sbjct:    1 MKFRLGVRLSFVAAIFMSALALSPARAAVVVQIDKSSQRMAVSIDGATRYSWPVSTGRSGYGTPSGVFRPQWMSRHYYSRKYYNSPMPHAIFFHHGFAIHGTTDIRRLGGRASHGCVRLHPSHAAALFALIQRSGQRNTRIQIN 144          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001FEE1024 (L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. S69 TaxID=1641856 RepID=UPI001FEE1024)

HSP 1 Score: 222 bits (566), Expect = 1.370e-72
Identity = 108/133 (81.20%), Postives = 123/133 (92.48%), Query Frame = 0
Query:   12 AAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 144
            + V+++ GLAL PARA+VVVQIDKS+QRMAVSVDG+ RY+WPVSTGR+GYGTP+G F PQSM RRYFSRKYYN+PMP+AIFFYYGFAIHGTNDI +LGG ASHGCVRLHPSHAAALFALV+ SGPRNTRIEI+
Sbjct:    3 SVVVLLSGLALTPARAEVVVQIDKSAQRMAVSVDGSMRYNWPVSTGRDGYGTPNGTFHPQSMARRYFSRKYYNAPMPHAIFFYYGFAIHGTNDISQLGGPASHGCVRLHPSHAAALFALVEHSGPRNTRIEIS 135          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: A0A525JG63_BRASZ (L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525JG63_BRASZ)

HSP 1 Score: 221 bits (563), Expect = 8.660e-72
Identity = 110/138 (79.71%), Postives = 123/138 (89.13%), Query Frame = 0
Query:    7 SRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 144
            +RL  A+ +++ GLAL P RA+VVVQIDKSSQRMAVSVDG  RY+WPVSTGR+GYGTPSG F PQSM R YFSRKYYN+PMP+AIFFYYGFAIHGTNDI RLGG ASHGCVRLHPSHAAALFALV+R+G RNTRIEI+
Sbjct:   22 ARLAFASFVMVSGLALTPVRAEVVVQIDKSSQRMAVSVDGEMRYNWPVSTGRDGYGTPSGTFHPQSMARHYFSRKYYNAPMPHAIFFYYGFAIHGTNDISRLGGPASHGCVRLHPSHAAALFALVERNGSRNTRIEIS 159          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001C0142C1 (L,D-transpeptidase n=4 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C0142C1)

HSP 1 Score: 212 bits (540), Expect = 1.250e-68
Identity = 103/121 (85.12%), Postives = 113/121 (93.39%), Query Frame = 0
Query:   24 PARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 144
            PARA VVVQIDKSSQRMAVSVDG TRYSWPVSTGRNGYGTPSGVF PQ M RR++SR+YYNSPMP++IFFY+GFAIHGT ++ RLGG ASHGCVRLHPSHAAALFALV+RSGPRNTRIEI+
Sbjct:    3 PARAGVVVQIDKSSQRMAVSVDGMTRYSWPVSTGRNGYGTPSGVFHPQMMARRWYSRRYYNSPMPHSIFFYHGFAIHGTTELARLGGPASHGCVRLHPSHAAALFALVERSGPRNTRIEIS 123          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: A0A1M6SM70_9BRAD (L,D-transpeptidase catalytic domain n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M6SM70_9BRAD)

HSP 1 Score: 209 bits (533), Expect = 2.160e-67
Identity = 106/138 (76.81%), Postives = 120/138 (86.96%), Query Frame = 0
Query:    7 SRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 144
            +RL+ AA +VM GLA  PARADVVVQIDKS+QRMA+SVDG  R++WPVSTGR+GYGTPSG F PQ M RR+FSRKYYNSPMP+AIFFY GFAIHGT ++ RLGG ASHGCVRL PSHAA LFALV R+GPRNTRIEI+
Sbjct:   10 ARLVFAAAVVMAGLAWSPARADVVVQIDKSAQRMAMSVDGMMRHNWPVSTGRSGYGTPSGTFHPQLMARRWFSRKYYNSPMPHAIFFYGGFAIHGTYELTRLGGPASHGCVRLDPSHAATLFALVGRNGPRNTRIEIS 147          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001BA77972 (L,D-transpeptidase n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA77972)

HSP 1 Score: 209 bits (533), Expect = 2.380e-67
Identity = 105/141 (74.47%), Postives = 119/141 (84.40%), Query Frame = 0
Query:    6 GSRLILAAVI---VMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEI 143
             SR +L A++   V+ G A  P RADV VQIDKSSQRMAVSVDG+ RY+WPVSTGR+GYGTP+G F PQ+M RR+FSRKYYNSPMP+AIFFYYGFAIHGT+DI RLGG ASHGCVRLHP+HAA LFALV R GPRNT I+I
Sbjct:    9 ASRAVLGAILGACVLAGFAATPVRADVRVQIDKSSQRMAVSVDGSPRYNWPVSTGRSGYGTPNGTFHPQAMMRRHFSRKYYNSPMPHAIFFYYGFAIHGTSDISRLGGPASHGCVRLHPAHAATLFALVSREGPRNTTIQI 149          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI00112B339F (L,D-transpeptidase n=1 Tax=Bradyrhizobium guangdongense TaxID=1325090 RepID=UPI00112B339F)

HSP 1 Score: 208 bits (530), Expect = 5.990e-67
Identity = 103/128 (80.47%), Postives = 111/128 (86.72%), Query Frame = 0
Query:   16 VMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEI 143
            V+ GLA   ARADV VQIDKSSQRMAVSVDG+ RY WPVSTGR+GYGTP+G F PQ+M RRYFSRKYYNSPMP+AIFFYYGFAIHGT DI RLGG ASHGCVRLHP+HAA LFALV R GPRNT I+I
Sbjct:   18 VLAGLAATSARADVRVQIDKSSQRMAVSVDGSPRYDWPVSTGRSGYGTPNGTFHPQAMMRRYFSRKYYNSPMPHAIFFYYGFAIHGTTDISRLGGPASHGCVRLHPAHAATLFALVSREGPRNTTIQI 145          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: A0A1H0G5S5_9BRAD (L,D-transpeptidase catalytic domain n=1 Tax=Afipia sp. GAS231 TaxID=1882747 RepID=A0A1H0G5S5_9BRAD)

HSP 1 Score: 206 bits (523), Expect = 5.920e-66
Identity = 108/144 (75.00%), Postives = 118/144 (81.94%), Query Frame = 0
Query:    1 MKLLFGSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN 144
            MK  +G  LI A  +V+   A  PA ADVVVQIDKSSQRMAVSVDG  RY+WPVSTG  GYGTPSGVF PQSM R +FSRKYYNSPMP++IF YYGFAIHGTNDI RLGG ASHGCVRLHPSHAAAL+ LVQR+G  +TRIEIN
Sbjct:    1 MKFAWGKALIAAVAMVVSSWA--PASADVVVQIDKSSQRMAVSVDGVPRYNWPVSTGGGGYGTPSGVFHPQSMARMHFSRKYYNSPMPHSIFSYYGFAIHGTNDIARLGGPASHGCVRLHPSHAAALYGLVQRNGAGSTRIEIN 142          
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Match: UPI001BA7DCAA (L,D-transpeptidase n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA7DCAA)

HSP 1 Score: 205 bits (522), Expect = 8.410e-66
Identity = 106/143 (74.13%), Postives = 118/143 (82.52%), Query Frame = 0
Query:    1 MKLLFGSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRYSWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIHGTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEI 143
            MKLL G RL LAA  +   L   PA A VVVQI KSSQRM+VSVDGA RYSWPVSTGR GYGTPSG F PQ M RR++S+KYYNSPMP++IFFYYG+AIHGT D+GRLGG ASHGCVRLHPSHAA L+ALV+R+G  NTRIEI
Sbjct:    1 MKLLSGVRLALAAAFI--SLLAAPAHAGVVVQISKSSQRMSVSVDGAPRYSWPVSTGRRGYGTPSGTFHPQMMARRWYSKKYYNSPMPHSIFFYYGYAIHGTTDLGRLGGPASHGCVRLHPSHAATLYALVERNGRGNTRIEI 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18048.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI002011F7D82.310e-7482.73L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. AUGA... [more]
UPI001BA46D2F3.080e-7379.86L,D-transpeptidase n=9 Tax=Bradyrhizobium TaxID=37... [more]
UPI001FEE10241.370e-7281.20L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. S69 ... [more]
A0A525JG63_BRASZ8.660e-7279.71L,D-transpeptidase n=1 Tax=Bradyrhizobium sp. TaxI... [more]
UPI001C0142C11.250e-6885.12L,D-transpeptidase n=4 Tax=unclassified Bradyrhizo... [more]
A0A1M6SM70_9BRAD2.160e-6776.81L,D-transpeptidase catalytic domain n=1 Tax=Bradyr... [more]
UPI001BA779722.380e-6774.47L,D-transpeptidase n=2 Tax=Bradyrhizobium TaxID=37... [more]
UPI00112B339F5.990e-6780.47L,D-transpeptidase n=1 Tax=Bradyrhizobium guangdon... [more]
A0A1H0G5S5_9BRAD5.920e-6675.00L,D-transpeptidase catalytic domain n=1 Tax=Afipia... [more]
UPI001BA7DCAA8.410e-6674.13L,D-transpeptidase n=1 Tax=Bradyrhizobium lablabi ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005490L,D-transpeptidase catalytic domainPFAMPF03734YkuDcoord: 30..134
e-value: 3.2E-19
score: 69.8
IPR005490L,D-transpeptidase catalytic domainCDDcd16913YkuD_likecoord: 30..143
e-value: 4.19326E-35
score: 116.254
IPR038063L,D-transpeptidase catalytic domain-likeGENE3D2.40.440.10coord: 27..144
e-value: 8.5E-27
score: 96.1
IPR038063L,D-transpeptidase catalytic domain-likeSUPERFAMILY141523L,D-transpeptidase catalytic domain-likecoord: 28..133
NoneNo IPR availablePANTHERPTHR30582:SF2L,D-TRANSPEPTIDASE YCIB-RELATEDcoord: 25..143
NoneNo IPR availablePANTHERPTHR30582L,D-TRANSPEPTIDASEcoord: 25..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18048contigP-wetherbeei_contig18048:279..713 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18048.1.1mRNA_P-wetherbeei_contig18048.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig18048 267..713 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig18048.1.1 ID=prot_P-wetherbeei_contig18048.1.1|Name=mRNA_P-wetherbeei_contig18048.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MKLLFGSRLILAAVIVMCGLALKPARADVVVQIDKSSQRMAVSVDGATRY
SWPVSTGRNGYGTPSGVFQPQSMHRRYFSRKYYNSPMPNAIFFYYGFAIH
GTNDIGRLGGSASHGCVRLHPSHAAALFALVQRSGPRNTRIEIN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005490LD_TPept_cat_dom
IPR038063Transpep_catalytic_dom