mRNA_P-wetherbeei_contig17788.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17788.2.1
Unique NamemRNA_P-wetherbeei_contig17788.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17788.2.1 vs. uniprot
Match: A0A352KFV1_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KFV1_9PROT)

HSP 1 Score: 155 bits (391), Expect = 6.740e-46
Identity = 81/139 (58.27%), Postives = 104/139 (74.82%), Query Frame = 1
Query:    4 MNLLDQPIRRSRKMSMTSMIDVVFLLLIFFMLINTFGSTQVLRFATPAGERKSIEKDFSLAPVFIRADNSIDIDGKTFPVDALKGEMQKIKSRATEVTLMIVVEPGAKNQALIHVIEAARSTGLKNIAMKKLKDAEAIL 420
            M L ++PIR SR++++T +IDVVFLLLIFFML++TF  TQ+LRF TPAGER+S E+ F L PV + A  SI IDG+T   D LK EM+KI   A EVT++++ EPGAK Q LI  +EAARS G+ NIAMKK  DA ++L
Sbjct:    1 MALFEEPIRHSRRLTLTPLIDVVFLLLIFFMLVSTFSDTQILRFVTPAGERQSTEQQFELVPVLLSAKGSISIDGRTIAPDLLKLEMEKIAVAADEVTVVMIAEPGAKTQLLIAAVEAARSAGITNIAMKKEADARSLL 139          
BLAST of mRNA_P-wetherbeei_contig17788.2.1 vs. uniprot
Match: A0A2N3E0C6_9PROT (Biopolymer transporter ExbD n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-12 TaxID=2013658 RepID=A0A2N3E0C6_9PROT)

HSP 1 Score: 90.9 bits (224), Expect = 9.540e-21
Identity = 48/131 (36.64%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   10 LLDQPIRRSRKMSMTSMIDVVFLLLIFFMLINTFGSTQVLRFATPAGERKSIEKDFSLAPVFIRADNSIDIDGKTFPVDALKGEMQKIKSRATEVTLMIVVEPGAKNQALIHVIEAARSTGLKNIAMKKLK 402
            + ++P+RR    S+T +IDVVFLLLIFFML  +F  TQ L   TPA    ++ KD  +  +++  D ++ IDGK     AL   ++++    T++T+ I+ E G++ QA +  +EAAR +G KN+   +++
Sbjct:    1 MFEEPVRRRGMASLTPLIDVVFLLLIFFMLTTSFLQTQSLAVVTPAPSADALPKDARVVEIWLMGDGTLRIDGKPVLRAALAEGVKEVIGERTDMTVTILAEKGSRTQAFVAAVEAARQSGAKNVGTARVE 131          
BLAST of mRNA_P-wetherbeei_contig17788.2.1 vs. uniprot
Match: A0A2E1Q736_9PROT (Uncharacterized protein n=4 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1Q736_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 3.280e-20
Identity = 49/134 (36.57%), Postives = 79/134 (58.96%), Query Frame = 1
Query:    1 VMNLLDQPIRRSRKMSMTSMIDVVFLLLIFFMLINTFGSTQVLRFATPAGERKSIEKDFSLAPVFIRADNSIDIDGKTFPVDALKGEMQKIKSRATEVTLMIVVEPGAKNQALIHVIEAARSTGLKNIAMKKLK 402
            V+++ ++PIR+    S+T +IDVVFLLLIFFML  +F   Q L   TPA     + KD  +  +++  D SI IDG+     AL   ++       ++T+ I+ E G++ QAL+  +EAAR +G KN+   +++
Sbjct:   19 VLSMFEEPIRKRGMASLTPLIDVVFLLLIFFMLTTSFLQEQSLSVVTPAPSADELPKDARVVEIWLNGDGSIAIDGEPVERAALSEGLKAAIGERKDITVTILAEKGSRTQALVSAVEAARESGAKNVGTARVE 152          
BLAST of mRNA_P-wetherbeei_contig17788.2.1 vs. uniprot
Match: A0A2N3C1S7_9PROT (Uncharacterized protein n=2 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A2N3C1S7_9PROT)

HSP 1 Score: 88.6 bits (218), Expect = 1.270e-19
Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    7 NLLDQPIRRSRKMSMTSMIDVVFLLLIFFMLINTFGSTQVLRFATPAGERKSIEKDFSLAPVFIRADNSIDIDGKTFPVDALKGEMQKIKSRATEVTLMIVVEPGAKNQALIHVIEAARSTGLKNIAMKKLK 402
            ++ D+P R+    S+T +IDVVFLLLIFFML  +F  TQ L   TPA     + KD  +  +++  D SI IDGK     AL   +        ++T+ I+ E G++ QAL+  +EAAR +G K++   +++
Sbjct:   20 HMFDEPTRKRGMASLTPLIDVVFLLLIFFMLTTSFLQTQSLSVVTPAPSAADLPKDARVVEIWLNGDGSIAIDGKPIERAALTQGLNAAIGERKDITVTILAERGSRTQALVAAVEAARQSGAKSVGTARVE 151          
BLAST of mRNA_P-wetherbeei_contig17788.2.1 vs. uniprot
Match: A7HX65_PARL1 (Biopolymer transport protein ExbD/TolR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) TaxID=402881 RepID=A7HX65_PARL1)

HSP 1 Score: 85.5 bits (210), Expect = 1.220e-18
Identity = 45/131 (34.35%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   10 LLDQPIRRSRKMSMTSMIDVVFLLLIFFMLINTFGSTQVLRFATPAGERKSIEKDFSLAPVFIRADNSIDIDGKTFPVDALKGEMQKIKSRATEVTLMIVVEPGAKNQALIHVIEAARSTGLKNIAMKKLK 402
            + ++P+RR    S+T +IDVVFLLLIFFML  +F  TQ L   TPA     +  D  +  +++  D ++ +DGK     AL   +++      ++T+ I+ E G++ QAL+  +EAAR +G K +   +++
Sbjct:    1 MFEEPVRRRGMASLTPLIDVVFLLLIFFMLTTSFMQTQSLSVVTPAPSADELPTDARVVEIWLMGDGTLRLDGKPVERTALTASLREAIGERKDMTVTILAEKGSRTQALVAAVEAARQSGAKAVGTARVE 131          
BLAST of mRNA_P-wetherbeei_contig17788.2.1 vs. uniprot
Match: A0A2D4VIU1_9HYPH (Biopolymer transporter ExbD n=2 Tax=Parvibaculum TaxID=256616 RepID=A0A2D4VIU1_9HYPH)

HSP 1 Score: 85.5 bits (210), Expect = 1.310e-18
Identity = 45/129 (34.88%), Postives = 74/129 (57.36%), Query Frame = 1
Query:   16 DQPIRRSRKMSMTSMIDVVFLLLIFFMLINTFGSTQVLRFATPAGERKSIEKDFSLAPVFIRADNSIDIDGKTFPVDALKGEMQKIKSRATEVTLMIVVEPGAKNQALIHVIEAARSTGLKNIAMKKLK 402
            D P++R R MS+T +IDVVF LLIFFML  +F  TQ L   TPA ++K + +D  +  +++  D S+ +DG       L   ++      T++T+ I+ E  ++ Q L+  +EAAR  G  N+   +++
Sbjct:    6 DVPVKRRRMMSLTPLIDVVFQLLIFFMLTTSFLQTQALSVVTPAADQKELPEDARVVEIWLMGDGSLRVDGDPVSSAGLADAVRARIGERTDMTVTILAERDSRTQQLVRAVEAAREAGATNVGTARVE 134          
BLAST of mRNA_P-wetherbeei_contig17788.2.1 vs. uniprot
Match: A0A2D8RV27_9HYPH (Uncharacterized protein n=1 Tax=Parvibaculum sp. TaxID=2024848 RepID=A0A2D8RV27_9HYPH)

HSP 1 Score: 85.9 bits (211), Expect = 1.430e-18
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 1
Query:   10 LLDQPIRRSRKMSMTSMIDVVFLLLIFFMLINTFGSTQVLRFATPAGERKSIEKDFSLAPVFIRADNSIDIDGKTFPVDALKGEMQKIKSRATEVTLMIVVEPGAKNQALIHVIEAARSTGLKNIAMKKLK 402
            + + P R+    S+T +IDVVFLLLIFFML  +F  TQ L   TPA   + + KD  +  +++  D SI IDG      AL   ++       ++T+ I+ E G++ QAL+  +EAAR +G KN+   +++
Sbjct:   21 MFEAPPRKRGMASLTPLIDVVFLLLIFFMLTTSFLQTQSLSVVTPAPSVEDLPKDARVVEIWLNGDGSIAIDGTPIERKALPEGLKTAIGERNDITVTILAEKGSRTQALVAAVEAARQSGAKNVGTARVE 151          
BLAST of mRNA_P-wetherbeei_contig17788.2.1 vs. uniprot
Match: A0A2A5ET18_9HYPH (Uncharacterized protein n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A5ET18_9HYPH)

HSP 1 Score: 82.8 bits (203), Expect = 1.330e-17
Identity = 48/131 (36.64%), Postives = 77/131 (58.78%), Query Frame = 1
Query:   10 LLDQPIRRSRKMSMTSMIDVVFLLLIFFMLINTFGSTQVLRFATPAGERKSIEKDFSLAPVFIRADNSIDIDGKTFPVDALKGEMQKIKSRATEVTLMIVVEPGAKNQALIHVIEAARSTGLKNIAMKKLK 402
            + D P+ + R +S+T +IDVVFLLLIFFML  +F  TQ L   TPA   + +E D  +  V++ +D +  +DG+   ++ L   +++      E  + I+VE GA  Q LI  IEAAR+ G ++I   +++
Sbjct:    1 MFDVPVHKKRIVSLTPLIDVVFLLLIFFMLATSFIQTQALAVLTPAPSPEEVETDRHVVEVWVLSDGTHRLDGEVITLETLSDGIRRNLGGDPEAVVSILVEKGAAVQPLIGAIEAARNGGAQSIGTSRVE 131          
BLAST of mRNA_P-wetherbeei_contig17788.2.1 vs. uniprot
Match: A0A2N3E8V9_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium HGW-Alphaproteobacteria-11 TaxID=2013657 RepID=A0A2N3E8V9_9PROT)

HSP 1 Score: 79.7 bits (195), Expect = 2.170e-16
Identity = 44/131 (33.59%), Postives = 72/131 (54.96%), Query Frame = 1
Query:   10 LLDQPIRRSRKMSMTSMIDVVFLLLIFFMLINTFGSTQVLRFATPAGERKSIEKDFSLAPVFIRADNSIDIDGKTFPVDALKGEMQKIKSRATEVTLMIVVEPGAKNQALIHVIEAARSTGLKNIAMKKLK 402
            + D+P+RR    S+T +IDVVFLLLIFFML  +F  TQ L   TPA     +  D  +  +++  D ++ +DG     + L   ++       ++T+ I+ E G+K QA +  IEAAR  G  ++   +++
Sbjct:    1 MFDEPVRRRNMASLTPLIDVVFLLLIFFMLTTSFLKTQSLSVVTPAPSADELPTDARVVEIWLMGDGTLRVDGTPVEREGLVEAVKAGIGARKDMTVTILAESGSKTQAFVSAIEAARQAGAHDVGTARVE 131          
BLAST of mRNA_P-wetherbeei_contig17788.2.1 vs. uniprot
Match: A0A2A4S8V0_9HYPH (Biopolymer transporter ExbD n=2 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4S8V0_9HYPH)

HSP 1 Score: 79.3 bits (194), Expect = 4.000e-16
Identity = 48/131 (36.64%), Postives = 75/131 (57.25%), Query Frame = 1
Query:   10 LLDQPIRRSRKMSMTSMIDVVFLLLIFFMLINTFGSTQVLRFATPA-GERKSIEKDFSLAPVFIRADNSIDIDGKTFPVDALKGEMQKIKSRATEVTLMIVVEPGAKNQALIHVIEAARSTGLKNIAMKKL 399
            L D+P+ R R +S+T +IDVVFLLLIFFML +TF  TQ L   TPA  E + ++ D  +  + + +D  + IDGKT  V  L+ +++       E  + ++ E  A  Q LI  ++AAR  G   ++  ++
Sbjct:   12 LFDEPVGRKRVLSLTPLIDVVFLLLIFFMLASTFMKTQTLTVITPAPDESEEVDTDRVVIELGVHSDGHLTIDGKTVLVGNLEDKLKARIKENPEAIVSVLAEKDALVQPLIWAVDAARRAGADTVSTSRV 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17788.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A352KFV1_9PROT6.740e-4658.27Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2N3E0C6_9PROT9.540e-2136.64Biopolymer transporter ExbD n=1 Tax=Alphaproteobac... [more]
A0A2E1Q736_9PROT3.280e-2036.57Uncharacterized protein n=4 Tax=Proteobacteria Tax... [more]
A0A2N3C1S7_9PROT1.270e-1937.12Uncharacterized protein n=2 Tax=unclassified Alpha... [more]
A7HX65_PARL11.220e-1834.35Biopolymer transport protein ExbD/TolR n=1 Tax=Par... [more]
A0A2D4VIU1_9HYPH1.310e-1834.88Biopolymer transporter ExbD n=2 Tax=Parvibaculum T... [more]
A0A2D8RV27_9HYPH1.430e-1836.64Uncharacterized protein n=1 Tax=Parvibaculum sp. T... [more]
A0A2A5ET18_9HYPH1.330e-1736.64Uncharacterized protein n=1 Tax=Rhodobiaceae bacte... [more]
A0A2N3E8V9_9PROT2.170e-1633.59Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A2A4S8V0_9HYPH4.000e-1636.64Biopolymer transporter ExbD n=2 Tax=Rhodobiaceae b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17788contigP-wetherbeei_contig17788:831..1250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog402881.Plav_2891
PFAMsExbD
Model size420
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03559
KEGG TC1.A.30.2.1
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.93e-19
EggNOG OGsCOG0848@1|root,COG0848@2|Bacteria,1NN40@1224|Proteobacteria,2UN72@28211|Alphaproteobacteria
DescriptionExbD TolR
Cds size417
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186126.811137-CDS-P-wetherbeei_contig17788:830..12471683186126.811137-CDS-P-wetherbeei_contig17788:830..1247Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17788 831..1247 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186126.820618-UTR-P-wetherbeei_contig17788:1247..12501683186126.820618-UTR-P-wetherbeei_contig17788:1247..1250Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17788 1248..1250 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17788.2.1prot_P-wetherbeei_contig17788.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17788 831..1247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17788.2.1

>prot_P-wetherbeei_contig17788.2.1 ID=prot_P-wetherbeei_contig17788.2.1|Name=mRNA_P-wetherbeei_contig17788.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
MNLLDQPIRRSRKMSMTSMIDVVFLLLIFFMLINTFGSTQVLRFATPAGE
RKSIEKDFSLAPVFIRADNSIDIDGKTFPVDALKGEMQKIKSRATEVTLM
IVVEPGAKNQALIHVIEAARSTGLKNIAMKKLKDAEAIL
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mRNA from alignment at P-wetherbeei_contig17788:831..1250-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17788.2.1 ID=mRNA_P-wetherbeei_contig17788.2.1|Name=mRNA_P-wetherbeei_contig17788.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig17788:831..1250- (Phaeothamnion wetherbeei SAG_119_79)
GTGATGAATTTATTGGATCAGCCCATTCGGCGCTCCCGGAAAATGAGCAT GACGTCCATGATCGACGTCGTATTTCTTCTGCTAATATTCTTTATGCTGA TTAATACATTTGGCAGCACTCAGGTGCTGCGCTTTGCAACCCCGGCGGGC GAGCGTAAATCGATCGAAAAGGACTTCAGTCTTGCGCCGGTGTTTATTCG CGCCGACAACAGCATCGACATTGACGGGAAAACTTTTCCGGTAGACGCCC TGAAAGGGGAAATGCAGAAAATAAAATCACGGGCAACCGAAGTGACACTG ATGATTGTGGTGGAACCCGGCGCCAAAAACCAGGCCCTGATTCATGTGAT CGAGGCTGCGCGCAGCACCGGCCTGAAAAACATCGCTATGAAAAAGCTGA AGGACGCGGAAGCCATTTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17788:831..1250-

>mRNA_P-wetherbeei_contig17788.2.1 ID=mRNA_P-wetherbeei_contig17788.2.1|Name=mRNA_P-wetherbeei_contig17788.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig17788:831..1250- (Phaeothamnion wetherbeei SAG_119_79)
ATGAATTTATTGGATCAGCCCATTCGGCGCTCCCGGAAAATGAGCATGAC
GTCCATGATCGACGTCGTATTTCTTCTGCTAATATTCTTTATGCTGATTA
ATACATTTGGCAGCACTCAGGTGCTGCGCTTTGCAACCCCGGCGGGCGAG
CGTAAATCGATCGAAAAGGACTTCAGTCTTGCGCCGGTGTTTATTCGCGC
CGACAACAGCATCGACATTGACGGGAAAACTTTTCCGGTAGACGCCCTGA
AAGGGGAAATGCAGAAAATAAAATCACGGGCAACCGAAGTGACACTGATG
ATTGTGGTGGAACCCGGCGCCAAAAACCAGGCCCTGATTCATGTGATCGA
GGCTGCGCGCAGCACCGGCCTGAAAAACATCGCTATGAAAAAGCTGAAGG
ACGCGGAAGCCATTTTG
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