mRNA_P-wetherbeei_contig1767.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1767.1.1
Unique NamemRNA_P-wetherbeei_contig1767.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1767.1.1 vs. uniprot
Match: A0A6H5K0L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L8_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 9.880e-24
Identity = 149/482 (30.91%), Postives = 198/482 (41.08%), Query Frame = 1 
Query:    1 RELSCCSWCPDGNSFAAGFADGSYAVWDSNKSAAPLLRIDRTAAATASPLSAGGEETGPYCWIRTPVISLQWVPIPRGGXXXXXXSNCKLSGVTWGLVVAGGLQIDEPSEADGVSLLLSSPPPDDGAXXXXXXXXXWGPRSRSRSHKLSRAASSSKGIAPGTPQWQAAELPLASGNERLADVRIVSIGGGG--------------------LAEGDRAVEAAAAASNW-----ELTLVALVTSTRSVGGVGAALAAREQWADIVMCGARTAADGGFVARPPSPLPGHFSTAGAVTTVVSAGLRPAMDLVNFMSCTLEEPGRGSSSGGXXXXSTGAGDPPWLSGGGARWSRSVLAPRRDEALAVSELLVFGHADGALTFYEGSGPAAWGDPRLAVSMG--IEEEGPSTLVPMGAVPLGRWPGVSGEILGGGXXXXXXXXXXXXVTAVDVLVERDHDPRAA---LDACFVAAGLAGGAVAVLRL 1356
             E++  +  P G +FAAGFA G YAV+  + S +    + R         S   E  GP   +RT V  +QWV +   G            G T GLVVAGG++I+E  E DGVSLL+ S                 G              +++K          A  +P A G ERL+ V  V  G G                       +G    E AAA  +      EL ++ LV       G    L  R   + I  C  RT+     +   P     H S    VT V    L  +  +++FM+C   E        G    +     PP L GG  RW  SV + RRDEAL  SELLV GH+DG+L+F+E  GPA+  D  + +S G  +  E PS  V +G+VP     G+     G G            VTA+DV VERDH   A     +AC+VA GL  G   V+ L
Sbjct:  315 HEVTSLALHPSGEAFAAGFAAGCYAVFSVSSSPSHEADLPRWVREVGDDGSCPRE--GPTI-VRTAVSLVQWVRVRGAGV-----------GRTSGLVVAGGVEIEEGEEPDGVSLLVLS----------TEAVGARGXXXXXXXXXXXDVVTAAKAALE-----TAVFVPFAMGQERLSHVHCVLSGAGAPTQEPHWAGTRSSGDLSEDASVDGKDEPEPAAAQEDEVEVVEELVVLGLVKWNEEFLGDDGRLHFRLA-SSIQACPIRTSPYVALLQLAPERFGPHLSGFATVTAVACTPLLSSSTILDFMTCLGAEQAEEEGQNGSQTTA-----PPLLRGGYLRWPDSVPSRRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDA-VCLSEGRVVMREVPSGAVLLGSVPAA---GLGSPEEGAGNAA---------VTALDVWVERDHVAAAVPAGRNACWVAVGLESGDARVIVL 748
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BLAST of mRNA_P-wetherbeei_contig1767.1.1 vs. uniprot
Match: D8LBN4_ECTSI (V-SNARE coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN4_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 4.190e-23
Identity = 154/489 (31.49%), Postives = 207/489 (42.33%), Query Frame = 1 
Query:    1 RELSCCSWCPDGNSFAAGFADGSYAVWDSNKSAAPLLRIDRTAAATASPLSAGGEETGPYCWIRTPVISLQWVPIPRGGXXXXXXSNCKLSGVTWGLVVAGGLQIDEPSEADGVSLLLSSPPPDDGAXXXXXXXXXWGPRSRSRSHKLSRAASSSKGIAPGTPQWQAAELPLASGNERLADVRIVSIGGGG----------LAEGDRAVEA---------AAAASN------WELTLVALVTSTRSVGGVGAALAAREQWADIVMCGARTAADGGFVARPPSPLPGHFSTAGAVTTVVSAGLRPAMDLVNFMSCT----LEEPGRGSSSGGXXXXSTGAGDPPWLSGGGARWSRSVLAPRRDEALAVSELLVFGHADGALTFYEGSGPAAWGDPRLAVSMG--IEEEGPSTLVPMGAVPLGRWPGVSGEILGGGXXXXXXXXXXXXVTAVDVLVERDHDPRAA------LDACFVAAGLAGGAVAVLRL 1356
            RE++  +  P G +FAAGFA G YAV+  + S +      R         S   E  GP   +RT V  ++WV +   G           +G T GLVVAGG++I+E  E DGVSLL+ S                 G R                  A       A  +P A G ERL+ V  V  G G            + GD + +A         +AAA         EL ++ LV       G    L  R   + I  C  +T+     +   P     H S    VT V S  L  +  +++FM+C     ++E GR  S       +T +   P L GG  RW  SV + RRDEAL  SELLV GH+DG+L+F+E  GPA+  D  + +S G  +  E PS  V +G+VP     G+     G G            VTA+DV VERDH   AA       +AC+VA GL  G   V+ L
Sbjct:  286 REVTSLALHPSGEAFAAGFAAGCYAVFSVSSSPSHETGPPRWVREVGDDGSCPRE--GPTI-VRTAVSLVRWVRVRGAG-----------AGRTSGLVVAGGVEIEEGEEPDGVSLLVPS-------------SEAVGARGXXXXXXXXXXXXXXVVTAAKAALETAVFVPFAMGQERLSHVHCVLSGTGAPTREPRRAGTRSSGDLSEDARVGGKDEPDSAAAQEDEVEVAEELVVLGLVKWNEEFLGDDGRLHFRLA-SSIQACPIQTSPYVALLQLAPERFGPHLSGFATVTAVASTPLLSSSTILDFMTCLGAEQVQEEGRNGSQ------TTAS---PLLRGGYLRWPDSVPSRRRDEALGTSELLVAGHSDGSLSFWECCGPASRQDA-VCLSEGRVVMREVPSGTVLLGSVPAA---GLGSPEEGAGNAA---------VTALDVWVERDHVAAAAGAAAAGRNACWVAVGLESGDARVIVL 724
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1767.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0L8_9PHAE9.880e-2430.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBN4_ECTSI4.190e-2331.49V-SNARE coiled-coil homology domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1767contigP-wetherbeei_contig1767:14..2064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size2051
Hectar predicted targeting categoryother localisation
Exons1
Cds size2049
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186122.7697732-CDS-P-wetherbeei_contig1767:13..20621683186122.7697732-CDS-P-wetherbeei_contig1767:13..2062Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1767 14..2062 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1767.1.1prot_P-wetherbeei_contig1767.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1767 14..2062 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1767.1.1

>prot_P-wetherbeei_contig1767.1.1 ID=prot_P-wetherbeei_contig1767.1.1|Name=mRNA_P-wetherbeei_contig1767.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=683bp
RELSCCSWCPDGNSFAAGFADGSYAVWDSNKSAAPLLRIDRTAAATASPL
SAGGEETGPYCWIRTPVISLQWVPIPRGGGGGGGGSNCKLSGVTWGLVVA
GGLQIDEPSEADGVSLLLSSPPPDDGAGAGGSGSGRWGPRSRSRSHKLSR
AASSSKGIAPGTPQWQAAELPLASGNERLADVRIVSIGGGGLAEGDRAVE
AAAAASNWELTLVALVTSTRSVGGVGAALAAREQWADIVMCGARTAADGG
FVARPPSPLPGHFSTAGAVTTVVSAGLRPAMDLVNFMSCTLEEPGRGSSS
GGGSGGSTGAGDPPWLSGGGARWSRSVLAPRRDEALAVSELLVFGHADGA
LTFYEGSGPAAWGDPRLAVSMGIEEEGPSTLVPMGAVPLGRWPGVSGEIL
GGGGDGKGNGGGGGGVTAVDVLVERDHDPRAALDACFVAAGLAGGAVAVL
RLGPDDGRGLPWEELLPPPPPLPPLSAYVRAGPGGAGRKASEAGSAAPDA
GPGGSGGNGGVSAGSNSGGGNGNGHGNAGRRQSVDELAAVIAAAQAEARA
IDGIGDGGDKAAGYDAEATAAVLDSVDCGDEDEAANAAGSGGGAAGAAGA
AACAESAFAAAAARAAAWAMPSPVRMVINAHNEAVCAVMLALLGDSGGDG
GGAAFALLAADVGGTVSVSRVDDVDPSTMILKT
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mRNA from alignment at P-wetherbeei_contig1767:14..2064+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1767.1.1 ID=mRNA_P-wetherbeei_contig1767.1.1|Name=mRNA_P-wetherbeei_contig1767.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2051bp|location=Sequence derived from alignment at P-wetherbeei_contig1767:14..2064+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGAGCTAAGCTGCTGCTCCTGGTGCCCCGACGGCAATAGCTTCGCCGC
CGGCTTTGCCGATGGCTCTTATGCCGTCTGGGACTCCAACAAGTCTGCCG
CTCCGCTGCTGCGGATCGACCGGACCGCCGCCGCCACCGCTTCGCCTCTC
TCAGCAGGGGGAGAGGAAACGGGACCATACTGCTGGATTCGCACGCCCGT
GATATCATTGCAATGGGTGCCGATCCCACGGGGCGGCGGCGGCGGCGGCG
GCGGGAGCAACTGCAAGCTCTCCGGCGTCACGTGGGGGCTCGTGGTGGCC
GGCGGCCTGCAAATCGACGAGCCGAGCGAGGCGGACGGCGTTAGCCTGCT
GCTATCGTCGCCGCCGCCTGACGACGGTGCTGGCGCCGGCGGCAGCGGCA
GTGGACGGTGGGGCCCCCGCTCCCGCAGCCGCTCGCACAAGCTATCGCGG
GCGGCGTCATCGTCGAAAGGAATAGCGCCGGGGACGCCGCAGTGGCAGGC
GGCGGAACTGCCGCTGGCGTCTGGCAACGAGCGGTTGGCAGACGTCCGCA
TTGTCAGCATTGGTGGTGGCGGCTTAGCAGAGGGCGACAGGGCGGTGGAG
GCGGCAGCAGCGGCGTCAAATTGGGAGCTGACGCTGGTGGCTCTCGTAAC
ATCGACGCGGTCGGTCGGCGGCGTCGGCGCGGCGCTCGCGGCGCGAGAGC
AGTGGGCGGACATCGTCATGTGCGGCGCCCGCACTGCAGCGGATGGCGGC
TTTGTAGCGCGGCCGCCTTCTCCACTGCCCGGCCACTTCTCCACCGCGGG
GGCGGTGACGACGGTGGTGTCGGCAGGCCTGCGTCCTGCGATGGACCTGG
TCAACTTTATGAGCTGCACGCTTGAAGAACCGGGCCGCGGCAGTAGCAGC
GGTGGCGGCAGCGGCGGGAGCACGGGCGCCGGCGACCCGCCGTGGCTGAG
TGGCGGCGGCGCCCGCTGGAGCCGCAGCGTGCTGGCGCCACGGCGTGACG
AAGCCCTGGCTGTTTCAGAACTGTTAGTGTTCGGCCACGCCGACGGCGCC
CTGACCTTCTACGAGGGATCGGGCCCCGCCGCCTGGGGCGACCCACGGCT
GGCGGTGTCGATGGGCATCGAGGAGGAAGGGCCATCAACGCTTGTCCCGA
TGGGGGCGGTGCCCCTCGGCCGCTGGCCCGGAGTGAGCGGCGAGATTCTC
GGCGGCGGCGGTGACGGCAAAGGTAACGGCGGAGGCGGCGGCGGCGTAAC
GGCGGTGGACGTTTTGGTGGAGCGGGACCATGACCCGCGGGCGGCGCTCG
ACGCATGCTTCGTGGCGGCGGGGCTGGCCGGCGGCGCCGTGGCGGTGCTG
CGCCTCGGCCCGGACGACGGCCGGGGCCTACCGTGGGAGGAACTGCTGCC
GCCGCCGCCGCCGCTGCCGCCGCTATCGGCCTACGTTCGCGCTGGACCGG
GCGGTGCGGGAAGGAAAGCATCAGAGGCAGGCTCGGCAGCACCTGATGCG
GGGCCGGGTGGCAGCGGCGGCAATGGCGGCGTCAGTGCTGGCAGCAATAG
CGGCGGCGGCAACGGCAACGGCCACGGTAATGCGGGTCGGCGCCAGTCCG
TTGATGAGCTGGCTGCCGTTATCGCCGCGGCGCAGGCGGAAGCGCGAGCG
ATCGACGGCATCGGCGACGGCGGTGACAAAGCCGCCGGCTACGATGCGGA
GGCAACGGCCGCGGTGCTTGACAGCGTTGATTGCGGCGACGAGGACGAGG
CCGCGAACGCTGCCGGCAGCGGTGGCGGGGCTGCTGGTGCCGCAGGTGCT
GCCGCCTGCGCGGAATCCGCATTCGCTGCCGCCGCAGCGAGGGCCGCCGC
GTGGGCCATGCCGTCCCCGGTGCGGATGGTAATTAATGCGCACAACGAGG
CTGTTTGTGCGGTGATGCTCGCGTTGCTCGGTGACAGTGGCGGCGACGGC
GGCGGCGCCGCTTTTGCGCTTTTGGCGGCGGACGTAGGCGGGACAGTGTC
CGTGTCGCGCGTCGACGACGTCGATCCATCGACGATGATCCTCAAGACCG
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1767:14..2064+

>mRNA_P-wetherbeei_contig1767.1.1 ID=mRNA_P-wetherbeei_contig1767.1.1|Name=mRNA_P-wetherbeei_contig1767.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2049bp|location=Sequence derived from alignment at P-wetherbeei_contig1767:14..2064+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGAGCTAAGCTGCTGCTCCTGGTGCCCCGACGGCAATAGCTTCGCCGC
CGGCTTTGCCGATGGCTCTTATGCCGTCTGGGACTCCAACAAGTCTGCCG
CTCCGCTGCTGCGGATCGACCGGACCGCCGCCGCCACCGCTTCGCCTCTC
TCAGCAGGGGGAGAGGAAACGGGACCATACTGCTGGATTCGCACGCCCGT
GATATCATTGCAATGGGTGCCGATCCCACGGGGCGGCGGCGGCGGCGGCG
GCGGGAGCAACTGCAAGCTCTCCGGCGTCACGTGGGGGCTCGTGGTGGCC
GGCGGCCTGCAAATCGACGAGCCGAGCGAGGCGGACGGCGTTAGCCTGCT
GCTATCGTCGCCGCCGCCTGACGACGGTGCTGGCGCCGGCGGCAGCGGCA
GTGGACGGTGGGGCCCCCGCTCCCGCAGCCGCTCGCACAAGCTATCGCGG
GCGGCGTCATCGTCGAAAGGAATAGCGCCGGGGACGCCGCAGTGGCAGGC
GGCGGAACTGCCGCTGGCGTCTGGCAACGAGCGGTTGGCAGACGTCCGCA
TTGTCAGCATTGGTGGTGGCGGCTTAGCAGAGGGCGACAGGGCGGTGGAG
GCGGCAGCAGCGGCGTCAAATTGGGAGCTGACGCTGGTGGCTCTCGTAAC
ATCGACGCGGTCGGTCGGCGGCGTCGGCGCGGCGCTCGCGGCGCGAGAGC
AGTGGGCGGACATCGTCATGTGCGGCGCCCGCACTGCAGCGGATGGCGGC
TTTGTAGCGCGGCCGCCTTCTCCACTGCCCGGCCACTTCTCCACCGCGGG
GGCGGTGACGACGGTGGTGTCGGCAGGCCTGCGTCCTGCGATGGACCTGG
TCAACTTTATGAGCTGCACGCTTGAAGAACCGGGCCGCGGCAGTAGCAGC
GGTGGCGGCAGCGGCGGGAGCACGGGCGCCGGCGACCCGCCGTGGCTGAG
TGGCGGCGGCGCCCGCTGGAGCCGCAGCGTGCTGGCGCCACGGCGTGACG
AAGCCCTGGCTGTTTCAGAACTGTTAGTGTTCGGCCACGCCGACGGCGCC
CTGACCTTCTACGAGGGATCGGGCCCCGCCGCCTGGGGCGACCCACGGCT
GGCGGTGTCGATGGGCATCGAGGAGGAAGGGCCATCAACGCTTGTCCCGA
TGGGGGCGGTGCCCCTCGGCCGCTGGCCCGGAGTGAGCGGCGAGATTCTC
GGCGGCGGCGGTGACGGCAAAGGTAACGGCGGAGGCGGCGGCGGCGTAAC
GGCGGTGGACGTTTTGGTGGAGCGGGACCATGACCCGCGGGCGGCGCTCG
ACGCATGCTTCGTGGCGGCGGGGCTGGCCGGCGGCGCCGTGGCGGTGCTG
CGCCTCGGCCCGGACGACGGCCGGGGCCTACCGTGGGAGGAACTGCTGCC
GCCGCCGCCGCCGCTGCCGCCGCTATCGGCCTACGTTCGCGCTGGACCGG
GCGGTGCGGGAAGGAAAGCATCAGAGGCAGGCTCGGCAGCACCTGATGCG
GGGCCGGGTGGCAGCGGCGGCAATGGCGGCGTCAGTGCTGGCAGCAATAG
CGGCGGCGGCAACGGCAACGGCCACGGTAATGCGGGTCGGCGCCAGTCCG
TTGATGAGCTGGCTGCCGTTATCGCCGCGGCGCAGGCGGAAGCGCGAGCG
ATCGACGGCATCGGCGACGGCGGTGACAAAGCCGCCGGCTACGATGCGGA
GGCAACGGCCGCGGTGCTTGACAGCGTTGATTGCGGCGACGAGGACGAGG
CCGCGAACGCTGCCGGCAGCGGTGGCGGGGCTGCTGGTGCCGCAGGTGCT
GCCGCCTGCGCGGAATCCGCATTCGCTGCCGCCGCAGCGAGGGCCGCCGC
GTGGGCCATGCCGTCCCCGGTGCGGATGGTAATTAATGCGCACAACGAGG
CTGTTTGTGCGGTGATGCTCGCGTTGCTCGGTGACAGTGGCGGCGACGGC
GGCGGCGCCGCTTTTGCGCTTTTGGCGGCGGACGTAGGCGGGACAGTGTC
CGTGTCGCGCGTCGACGACGTCGATCCATCGACGATGATCCTCAAGACC
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