mRNA_P-wetherbeei_contig17666.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17666.2.1
Unique NamemRNA_P-wetherbeei_contig17666.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig17666.2.1 vs. uniprot
Match: A0A7C4TVJ3_9HYPH (50S ribosomal protein L11 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TVJ3_9HYPH)

HSP 1 Score: 219 bits (558), Expect = 2.440e-71
Identity = 105/134 (78.36%), Postives = 125/134 (93.28%), Query Frame = 1 
Query:    1 VPAQKANPSPPIGPALGQRGVNIMEFCKSFNAKTKDIDADTPIPVKITVFSDRSFTFEMKTPPATFFIKKAAGLKTTGKPGAGSKEPGRVQAGVITMAQVKDIAKLKMKDLNATDIEAAAKIIAGSARSMGIKV 402
            VPA KANPSPPIGPALGQRGVNI EFCK+FNAKTKD++ +TPIPV+ITV+SDRSFTFEM+TPPAT+F+KKAAGLKT+GKPG+GSKEPGR  AG +TMAQV++IA++KMKDLN  D+EAAA+ IAGSARSMG++V
Sbjct:   13 VPAGKANPSPPIGPALGQRGVNINEFCKAFNAKTKDMEPETPIPVRITVYSDRSFTFEMRTPPATYFLKKAAGLKTSGKPGSGSKEPGRTSAGSVTMAQVREIARMKMKDLNTEDLEAAARTIAGSARSMGLEV 146
[Close]
BLAST of mRNA_P-wetherbeei_contig17666.2.1 vs. uniprot
Match: UPI00088560E8 (50S ribosomal protein L11 n=1 Tax=Filomicrobium insigne TaxID=418854 RepID=UPI00088560E8)

HSP 1 Score: 218 bits (556), Expect = 4.920e-71
Identity = 110/134 (82.09%), Postives = 120/134 (89.55%), Query Frame = 1 
Query:    1 VPAQKANPSPPIGPALGQRGVNIMEFCKSFNAKTKDIDADTPIPVKITVFSDRSFTFEMKTPPATFFIKKAAGLKTTGKPGAGSKEPGRVQAGVITMAQVKDIAKLKMKDLNATDIEAAAKIIAGSARSMGIKV 402
            VPA KANPSPPIGPALGQRGVNIMEFCK+FNAKTKDI+ DTPIPVKITV+SDRSFTF MKTPPATFF+KKAAGLKTTGKPGAGSKEPGR   G +TM QV++IAK K+ DLN  DIE AA+ IAGSARSMGI+V
Sbjct:   13 VPAGKANPSPPIGPALGQRGVNIMEFCKAFNAKTKDIEPDTPIPVKITVYSDRSFTFIMKTPPATFFLKKAAGLKTTGKPGAGSKEPGRGTVGQVTMDQVREIAKTKLADLNTDDIEQAARSIAGSARSMGIRV 146
[Close]
BLAST of mRNA_P-wetherbeei_contig17666.2.1 vs. uniprot
Match: A0A258KW25_9HYPH (50S ribosomal protein L11 n=4 Tax=Hyphomicrobium TaxID=81 RepID=A0A258KW25_9HYPH)

HSP 1 Score: 216 bits (550), Expect = 4.040e-70
Identity = 107/134 (79.85%), Postives = 120/134 (89.55%), Query Frame = 1 
Query:    1 VPAQKANPSPPIGPALGQRGVNIMEFCKSFNAKTKDIDADTPIPVKITVFSDRSFTFEMKTPPATFFIKKAAGLKTTGKPGAGSKEPGRVQAGVITMAQVKDIAKLKMKDLNATDIEAAAKIIAGSARSMGIKV 402
            VPA  ANP+PPIGPALGQRGVNIMEFCKSFNAKTKD++  TPIPVKITV+SDRSFTFEM+TPPATF IKKAAG+K TGKPG+GSK PGR  AG ITMAQ++DIAKLKMKD+N  D++ AAK IAGSARSMG+KV
Sbjct:   13 VPAGAANPAPPIGPALGQRGVNIMEFCKSFNAKTKDLEQGTPIPVKITVYSDRSFTFEMRTPPATFLIKKAAGMKPTGKPGSGSKNPGRDVAGEITMAQLRDIAKLKMKDMNTNDLDQAAKTIAGSARSMGLKV 146
[Close]
BLAST of mRNA_P-wetherbeei_contig17666.2.1 vs. uniprot
Match: A0A101W7C6_9PROT (50S ribosomal protein L11 n=1 Tax=Alphaproteobacteria bacterium BRH_c36 TaxID=1734406 RepID=A0A101W7C6_9PROT)

HSP 1 Score: 212 bits (540), Expect = 1.350e-68
Identity = 103/136 (75.74%), Postives = 120/136 (88.24%), Query Frame = 1 
Query:    1 VPAQKANPSPPIGPALGQRGVNIMEFCKSFNAKTKDIDADTPIPVKITVFSDRSFTFEMKTPPATFFIKKAAGLKTTGKPGAGSKEPGRVQAGVITMAQVKDIAKLKMKDLNATDIEAAAKIIAGSARSMGIKVEG 408
            VPA KANPSPPIGPALGQRGVNIMEFCK+FNAK+KDI+ DTPIPVKITV+SDRSFTF+MKTPPATFF+KKAAGLK TGKPG+GSKEPGR     +TM Q ++IAK+K+ DLN  DIE  A+ IAGSA++MGI+V+G
Sbjct:   13 VPAGKANPSPPIGPALGQRGVNIMEFCKAFNAKSKDIEPDTPIPVKITVYSDRSFTFQMKTPPATFFLKKAAGLKATGKPGSGSKEPGRTVVASVTMDQCREIAKMKLADLNTDDIEQGARTIAGSAKAMGIEVKG 148
[Close]
BLAST of mRNA_P-wetherbeei_contig17666.2.1 vs. uniprot
Match: A0A109BN92_HYPSL (50S ribosomal protein L11 n=1 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A109BN92_HYPSL)

HSP 1 Score: 211 bits (536), Expect = 5.480e-68
Identity = 105/135 (77.78%), Postives = 119/135 (88.15%), Query Frame = 1 
Query:    1 VPAQKANPSPPIGPALGQRGVNIMEFCKSFNAKTKDIDADTPIPVKITVFSDRSFTFEMKTPPATFFIKKAAGLKTTGKPGAGSKEPGRVQAGVITMAQVKDIAKLKMKDLNATDIEAAAKIIAGSARSMGIKVE 405
            VPA  ANPSPPIGPALGQRGVNIMEFCKSFNAKTKD++  TPIPVKITV+SDRSFTF MKTPPATF IKKA G+K TGKPG+GSK PGR  AG ITM Q+++IAK+K+KD+N  DIEAAAK IAGSARSMG++V+
Sbjct:   13 VPAGAANPSPPIGPALGQRGVNIMEFCKSFNAKTKDLEQGTPIPVKITVYSDRSFTFVMKTPPATFLIKKAVGMKATGKPGSGSKNPGRDVAGSITMDQLREIAKVKLKDMNTDDIEAAAKTIAGSARSMGLQVK 147
[Close]
BLAST of mRNA_P-wetherbeei_contig17666.2.1 vs. uniprot
Match: UPI000931F9C5 (50S ribosomal protein L11 n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI000931F9C5)

HSP 1 Score: 208 bits (530), Expect = 4.500e-67
Identity = 103/134 (76.87%), Postives = 119/134 (88.81%), Query Frame = 1 
Query:    1 VPAQKANPSPPIGPALGQRGVNIMEFCKSFNAKTKDIDADTPIPVKITVFSDRSFTFEMKTPPATFFIKKAAGLKTTGKPGAGSKEPGRVQAGVITMAQVKDIAKLKMKDLNATDIEAAAKIIAGSARSMGIKV 402
            VPA  ANPSPPIGPALGQRGVNIMEFCKSFNAKTKD++  TPIPVKITV+SDRSFTFEM+TPPAT+ IKKAAG+K TGKPG+GSK PGR  AG IT+AQ+++IAKLKMKD+N  ++E A K IAGSARSMG++V
Sbjct:   13 VPAGAANPSPPIGPALGQRGVNIMEFCKSFNAKTKDLEQGTPIPVKITVYSDRSFTFEMRTPPATYLIKKAAGMKPTGKPGSGSKAPGRDVAGQITIAQLQEIAKLKMKDMNTDNLEQATKTIAGSARSMGLRV 146
[Close]
BLAST of mRNA_P-wetherbeei_contig17666.2.1 vs. uniprot
Match: N0B7G8_9HYPH (50S ribosomal protein L11 n=11 Tax=Hyphomicrobium TaxID=81 RepID=N0B7G8_9HYPH)

HSP 1 Score: 204 bits (520), Expect = 1.500e-65
Identity = 101/134 (75.37%), Postives = 118/134 (88.06%), Query Frame = 1 
Query:    1 VPAQKANPSPPIGPALGQRGVNIMEFCKSFNAKTKDIDADTPIPVKITVFSDRSFTFEMKTPPATFFIKKAAGLKTTGKPGAGSKEPGRVQAGVITMAQVKDIAKLKMKDLNATDIEAAAKIIAGSARSMGIKV 402
            VPA  ANPSPPIGPALGQRGVNIMEFCK+FNAKTKD++  TPIPVKITV+SDRSFTFEM+ PPAT+ IKKAAGL+ TGK G GSKEPGR  AG +T+AQ+K+IAK K+KD+N  DI+AAA+ +AGSARSMG+KV
Sbjct:   13 VPAGAANPSPPIGPALGQRGVNIMEFCKAFNAKTKDLEQGTPIPVKITVYSDRSFTFEMRQPPATYLIKKAAGLRPTGKGGTGSKEPGRSVAGQVTIAQLKEIAKGKLKDMNTDDIDAAARTLAGSARSMGLKV 146
[Close]
BLAST of mRNA_P-wetherbeei_contig17666.2.1 vs. uniprot
Match: A0A6I0EM31_HYPSQ (50S ribosomal protein L11 n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EM31_HYPSQ)

HSP 1 Score: 201 bits (510), Expect = 4.110e-64
Identity = 103/135 (76.30%), Postives = 117/135 (86.67%), Query Frame = 1 
Query:    1 VPAQKANPSPPIGPALGQRGVNIMEFCKSFNAKTKDIDADTPIPVKITVFSDRSFTFEMKTPPATFFIKKAAGLKTTGKPGAGSKEPGRVQAGVITMAQVKDIAKLKMKDLNATDIEAAAKIIAGSARSMGIKVE 405
            VPA  ANPSPPIGPALGQRGVNIMEFCKSFNAKTKD++  TPIPVKITVFSDRSFTFEM+TPPA+FF+KKAA + +      GSK+PGR  AG +TMAQV+DIAKLKMKDLN  D+EAAAK IAGSARSMG++V+
Sbjct:   13 VPAGAANPSPPIGPALGQRGVNIMEFCKSFNAKTKDMEQGTPIPVKITVFSDRSFTFEMRTPPASFFLKKAAKITS------GSKDPGRGVAGSVTMAQVRDIAKLKMKDLNTDDVEAAAKTIAGSARSMGLQVK 141
[Close]
BLAST of mRNA_P-wetherbeei_contig17666.2.1 vs. uniprot
Match: A0A1E4CVU0_9HYPH (50S ribosomal protein L11 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1E4CVU0_9HYPH)

HSP 1 Score: 198 bits (504), Expect = 3.370e-63
Identity = 103/134 (76.87%), Postives = 116/134 (86.57%), Query Frame = 1 
Query:    1 VPAQKANPSPPIGPALGQRGVNIMEFCKSFNAKTKDIDADTPIPVKITVFSDRSFTFEMKTPPATFFIKKAAGLKTTGKPGAGSKEPGRVQAGVITMAQVKDIAKLKMKDLNATDIEAAAKIIAGSARSMGIKV 402
            V A +ANP+PPIGPALGQRGVNIMEFCKSFNAKTKD++   PIPVKITVFSDRSFTFEMKTPPA+ F+KKAAG+++      GSKE GR  AG +TMAQV+DIAKLKMKDLN  DIEAAA+IIAGSARSMGI+V
Sbjct:   13 VKAGQANPAPPIGPALGQRGVNIMEFCKSFNAKTKDMEQGIPIPVKITVFSDRSFTFEMKTPPASHFLKKAAGIES------GSKETGRAVAGSVTMAQVRDIAKLKMKDLNTDDIEAAARIIAGSARSMGIRV 140
[Close]
BLAST of mRNA_P-wetherbeei_contig17666.2.1 vs. uniprot
Match: A0A2P5KR46_HYPSQ (50S ribosomal protein L11 n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2P5KR46_HYPSQ)

HSP 1 Score: 194 bits (494), Expect = 1.130e-61
Identity = 99/134 (73.88%), Postives = 115/134 (85.82%), Query Frame = 1 
Query:    1 VPAQKANPSPPIGPALGQRGVNIMEFCKSFNAKTKDIDADTPIPVKITVFSDRSFTFEMKTPPATFFIKKAAGLKTTGKPGAGSKEPGRVQAGVITMAQVKDIAKLKMKDLNATDIEAAAKIIAGSARSMGIKV 402
            VPA KANPSPPIGPALGQRGVNIMEFCK+FNAKTKD++  TPIPVKITV+SDRSFTFEM+TPPA+FF+KKAA +++      GSK PGR  AG +TMAQV++IAK K+KDLN  DIE AA+ IAGSARSMG+KV
Sbjct:   13 VPAGKANPSPPIGPALGQRGVNIMEFCKAFNAKTKDMEQGTPIPVKITVYSDRSFTFEMRTPPASFFLKKAAAVES------GSKTPGRDVAGQVTMAQVREIAKTKLKDLNTDDIEQAARTIAGSARSMGLKV 140
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17666.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TVJ3_9HYPH2.440e-7178.3650S ribosomal protein L11 n=1 Tax=Hyphomicrobiales... [more]
UPI00088560E84.920e-7182.0950S ribosomal protein L11 n=1 Tax=Filomicrobium in... [more]
A0A258KW25_9HYPH4.040e-7079.8550S ribosomal protein L11 n=4 Tax=Hyphomicrobium T... [more]
A0A101W7C6_9PROT1.350e-6875.7450S ribosomal protein L11 n=1 Tax=Alphaproteobacte... [more]
A0A109BN92_HYPSL5.480e-6877.7850S ribosomal protein L11 n=1 Tax=Hyphomicrobium s... [more]
UPI000931F9C54.500e-6776.8750S ribosomal protein L11 n=1 Tax=Hyphomicrobium s... [more]
N0B7G8_9HYPH1.500e-6575.3750S ribosomal protein L11 n=11 Tax=Hyphomicrobium ... [more]
A0A6I0EM31_HYPSQ4.110e-6476.3050S ribosomal protein L11 n=2 Tax=Hyphomicrobium s... [more]
A0A1E4CVU0_9HYPH3.370e-6376.8750S ribosomal protein L11 n=3 Tax=Alphaproteobacte... [more]
A0A2P5KR46_HYPSQ1.130e-6173.8850S ribosomal protein L11 n=1 Tax=Hyphomicrobium s... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17666contigP-wetherbeei_contig17666:1002..1412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1267005.KB911261_gene2263
Preferred namerplK
PFAMsRibosomal_L11,Ribosomal_L11_N
Model size411
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02867
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue2.21e-69
EggNOG OGsCOG0080@1|root,COG0080@2|Bacteria,1RA2M@1224|Proteobacteria,2U760@28211|Alphaproteobacteria,3N6UB@45401|Hyphomicrobiaceae
DescriptionForms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
Cds size411
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186122.6184819-CDS-P-wetherbeei_contig17666:1001..14121683186122.6184819-CDS-P-wetherbeei_contig17666:1001..1412Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17666 1002..1412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17666.2.1prot_P-wetherbeei_contig17666.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17666 1002..1412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17666.2.1

>prot_P-wetherbeei_contig17666.2.1 ID=prot_P-wetherbeei_contig17666.2.1|Name=mRNA_P-wetherbeei_contig17666.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
VPAQKANPSPPIGPALGQRGVNIMEFCKSFNAKTKDIDADTPIPVKITVF
SDRSFTFEMKTPPATFFIKKAAGLKTTGKPGAGSKEPGRVQAGVITMAQV
KDIAKLKMKDLNATDIEAAAKIIAGSARSMGIKVEG*
back to top

mRNA from alignment at P-wetherbeei_contig17666:1002..1412-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17666.2.1 ID=mRNA_P-wetherbeei_contig17666.2.1|Name=mRNA_P-wetherbeei_contig17666.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig17666:1002..1412- (Phaeothamnion wetherbeei SAG_119_79)
GTGCCGGCCCAGAAGGCCAATCCATCGCCGCCAATTGGTCCGGCGCTGGG
CCAGCGCGGCGTCAACATCATGGAGTTCTGCAAGTCCTTCAACGCGAAGA
CCAAGGACATCGACGCAGACACACCGATCCCGGTCAAGATCACGGTCTTC
TCCGATCGCTCGTTCACGTTCGAGATGAAGACGCCACCGGCGACCTTCTT
CATCAAGAAGGCGGCCGGCCTCAAGACGACGGGCAAGCCGGGCGCTGGTT
CCAAGGAGCCAGGGCGCGTGCAGGCGGGCGTTATCACGATGGCCCAGGTG
AAAGATATCGCGAAGCTGAAGATGAAAGATCTGAACGCCACGGATATCGA
GGCCGCTGCCAAGATCATTGCCGGCTCCGCCCGTTCCATGGGCATCAAGG
TTGAGGGGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17666:1002..1412-

>mRNA_P-wetherbeei_contig17666.2.1 ID=mRNA_P-wetherbeei_contig17666.2.1|Name=mRNA_P-wetherbeei_contig17666.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig17666:1002..1412- (Phaeothamnion wetherbeei SAG_119_79)
GTGCCGGCCCAGAAGGCCAATCCATCGCCGCCAATTGGTCCGGCGCTGGG
CCAGCGCGGCGTCAACATCATGGAGTTCTGCAAGTCCTTCAACGCGAAGA
CCAAGGACATCGACGCAGACACACCGATCCCGGTCAAGATCACGGTCTTC
TCCGATCGCTCGTTCACGTTCGAGATGAAGACGCCACCGGCGACCTTCTT
CATCAAGAAGGCGGCCGGCCTCAAGACGACGGGCAAGCCGGGCGCTGGTT
CCAAGGAGCCAGGGCGCGTGCAGGCGGGCGTTATCACGATGGCCCAGGTG
AAAGATATCGCGAAGCTGAAGATGAAAGATCTGAACGCCACGGATATCGA
GGCCGCTGCCAAGATCATTGCCGGCTCCGCCCGTTCCATGGGCATCAAGG
TTGAGGGGTGA
back to top