mRNA_P-wetherbeei_contig17449.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17449.1.1
Unique NamemRNA_P-wetherbeei_contig17449.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17449.1.1 vs. uniprot
Match: A0A835YTG3_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.360e-43
Identity = 85/111 (76.58%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    4 ITLELLQEYYHVPLVEVAKELGMSLTMLKKICRKFGIQRWPHRQIRSLNKTMQELQEKTAAAATAEEAAELQRQMSLLEKKRMLVMRGASSGLQSALRNALFLTNPQDLFE 336
            ITLELLQ YY+VPL E+AKELG+SLT+LKKICRKFGIQRWPHRQIRSLNKT QEL+E+   A TAEE AE++ Q+ LLEKK+ LV RGASSGLQSALRNALFL NP+ L E
Sbjct:   11 ITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSLNKTAQELKERAQCALTAEEHAEIEAQLQLLEKKKRLVTRGASSGLQSALRNALFLANPEQLEE 121          
BLAST of mRNA_P-wetherbeei_contig17449.1.1 vs. uniprot
Match: A0A835Z1M5_9STRA (Putative NIN-like transcription factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1M5_9STRA)

HSP 1 Score: 151 bits (381), Expect = 3.860e-40
Identity = 81/111 (72.97%), Postives = 94/111 (84.68%), Query Frame = 1
Query:    4 ITLELLQEYYHVPLVEVAKELGMSLTMLKKICRKFGIQRWPHRQIRSLNKTMQELQEKTAAAATAEEAAELQRQMSLLEKKRMLVMRGASSGLQSALRNALFLTNPQDLFE 336
            ITLELLQ +Y+VPL E+AKELG+SLT+LKKICRK+GIQRWPHRQIRS+NK+ QEL E+   A + EE AELQ Q+ LLEKK+ LV RGASSGLQSALRNALFL NP+ L E
Sbjct:   14 ITLELLQSFYNVPLAELAKELGLSLTLLKKICRKYGIQRWPHRQIRSINKSAQELTERINGATSHEERAELQSQLHLLEKKKRLVTRGASSGLQSALRNALFLANPEQLEE 124          
BLAST of mRNA_P-wetherbeei_contig17449.1.1 vs. uniprot
Match: H6WBB7_VAULI (Putative NIN-like transcription factor n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBB7_VAULI)

HSP 1 Score: 144 bits (363), Expect = 1.100e-37
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 1
Query:    4 ITLELLQEYYHVPLVEVAKELGMSLTMLKKICRKFGIQRWPHRQIRSLNKTMQELQEKTAAAATAEEAAELQRQMSLLEKKRMLVMRGASSGLQSALRNALFLTNPQDLFE 336
            ITLELLQ YY+VPL E+AKELG+SLT+LKKICRKFGIQRWPHRQIRS+NK +Q+L E+  +  + +E AEL+ Q+ LLEKKR LV +GASSGL +A+RNA+FL NP+ L E
Sbjct:   14 ITLELLQSYYNVPLAELAKELGLSLTLLKKICRKFGIQRWPHRQIRSINKNIQDLNERINSVNSPDEHAELRNQIGLLEKKRRLVTKGASSGLHTAMRNAIFLANPEHLQE 124          
BLAST of mRNA_P-wetherbeei_contig17449.1.1 vs. uniprot
Match: A0A835YN08_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN08_9STRA)

HSP 1 Score: 129 bits (323), Expect = 1.590e-34
Identity = 68/105 (64.76%), Postives = 87/105 (82.86%), Query Frame = 1
Query:    7 TLELLQEYYHVPLVEVAKELGMSLTMLKKICRKFGIQRWPHRQIRSLNKTMQELQEKTAAAATAEEAAELQRQMSLLEKKRMLVMRGASSGLQSALRNALFLTNP 321
            TLELLQ  ++ PLV+VA+E  +SLTM+K++CRK GIQRWPHRQIRSL+K + EL+E+ +A  +A E + LQ Q++LLEKKR LV RGASSGLQSALRNALF+ +P
Sbjct:    4 TLELLQSRFNTPLVDVAREFRVSLTMMKRLCRKLGIQRWPHRQIRSLDKLLFELEERISATTSARELSYLQEQVALLEKKRRLVTRGASSGLQSALRNALFMADP 108          
BLAST of mRNA_P-wetherbeei_contig17449.1.1 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.460e-21
Identity = 50/101 (49.50%), Postives = 73/101 (72.28%), Query Frame = 1
Query:   19 LQEYYHVPLVEVAKELGMSLTMLKKICRKFGIQRWPHRQIRSLNKTMQELQEKTAAAATAEEAAELQRQMSLLEKKRMLVMRGASSGLQSALRNALFLTNP 321
            L+E+YHVPL   A+EL +SLTMLKK+CR++GI+RWPHRQ+ SLNK++ +L+EK   A+  + AA L+ +   L  KR L+++ AS+GL   + NA+F   P
Sbjct:   18 LEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 118          
BLAST of mRNA_P-wetherbeei_contig17449.1.1 vs. uniprot
Match: A0A6H5JS66_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS66_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.780e-20
Identity = 51/111 (45.95%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    4 ITLELLQEYYHVPLVEVAKELGMSLTMLKKICRKFGIQRWPHRQIRSLNKTMQELQEKTAAAATAEEAAELQRQMSLLEKKRMLVMRGASSGLQSALRNALFLTNPQDLFE 336
            IT+E+LQ+++H PLV VA ELG+SLTM+K++CRK G+ RWP RQI S+NK M++L ++   A T  + A   + +   EKK+ L+ RGA++G+   +RNAL+L +  ++ E
Sbjct:   31 ITIEVLQQHFHQPLVVVADELGVSLTMIKRLCRKLGMPRWPFRQIDSINKAMEDLHDQLEGARTEADRARYCKALEDAEKKKQLITRGAAAGVDPNVRNALYLADTANVSE 141          
BLAST of mRNA_P-wetherbeei_contig17449.1.1 vs. uniprot
Match: A0A836CMG7_9STRA (RWP-RK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMG7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.580e-20
Identity = 52/109 (47.71%), Postives = 78/109 (71.56%), Query Frame = 1
Query:    4 ITLELLQEYYHVPLVEVAKELGMSLTMLKKICRKFGIQRWPHRQIRSLNKTMQELQEKTAAAATAEEAAELQRQMSLLEKKRMLVMRGASSGLQSALRNALFLTNPQDL 330
            ITL +L+  Y  PL   A+ LG+S TMLKK+CR++GIQRWPHRQIRS+ K +Q+  +  A A +A + A    +++LL+KKR +V++ AS GL ++LR+A+F+  P +L
Sbjct:  100 ITLSVLEACYGEPLTAAARRLGVSNTMLKKLCRRYGIQRWPHRQIRSIEKEVQKHMQARAQATSAVDIAACDERIALLQKKRAIVVKTASCGLNASLRSAIFMARPGEL 208          
BLAST of mRNA_P-wetherbeei_contig17449.1.1 vs. uniprot
Match: D8LTZ5_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ5_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 8.540e-20
Identity = 50/111 (45.05%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    4 ITLELLQEYYHVPLVEVAKELGMSLTMLKKICRKFGIQRWPHRQIRSLNKTMQELQEKTAAAATAEEAAELQRQMSLLEKKRMLVMRGASSGLQSALRNALFLTNPQDLFE 336
            IT+E+LQ+++H PL+ VA ELG+SLTM+K++CRK G+ RWP RQI S+NK M++L ++   A T  + A   + +   EKK+ L+ RGA++G+   +RNAL+L +  ++ E
Sbjct:   31 ITIEVLQQHFHQPLMAVADELGVSLTMIKRLCRKLGMPRWPFRQIDSINKAMEDLHDQLEGARTEADRARYCKALEDAEKKKQLITRGAAAGVDPNVRNALYLADTANVSE 141          
BLAST of mRNA_P-wetherbeei_contig17449.1.1 vs. uniprot
Match: A0A7S3UTA5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTA5_HETAK)

HSP 1 Score: 96.3 bits (238), Expect = 2.690e-19
Identity = 52/106 (49.06%), Postives = 75/106 (70.75%), Query Frame = 1
Query:    4 ITLELLQEYYHVPLVEVAKELGMSLTMLKKICRKFGIQRWPHRQIRSLNKTMQELQ-EKTAAAATAEEAAELQRQMSLLEKKRMLVMRGASSGLQSALRNALFLTN 318
            I ++LL+  + +PL E A  LG+S+T LKKICRKF I+RWPHRQ+RSL   ++EL+ +K     T  + A+L R++ LLEKKR++V++ AS GL+   RNA+F  N
Sbjct:   29 INIDLLENKFDLPLSEAASSLGLSMTKLKKICRKFNIKRWPHRQVRSLENEIEELEMKKRRPNVTCAKIAKLNRRIELLEKKRLIVVKAASFGLEPKERNAIFCAN 134          
BLAST of mRNA_P-wetherbeei_contig17449.1.1 vs. uniprot
Match: A0A7S3YET5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YET5_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 8.290e-18
Identity = 52/130 (40.00%), Postives = 88/130 (67.69%), Query Frame = 1
Query:    4 ITLELLQEYYHVPLVEVAKELGMSLTMLKKICRKFGIQRWPHRQIRSLNKTMQELQEK-TAAAATAEEAAELQRQMSLLEKKRMLVMRGASSGLQSALRNALFLTNPQDLFE-----GGDGDGAISDAAL 375
            I L +L+  Y +PL EVA ++G+SLTM+K+ICR + I+RWPHRQ++S+ KT+ +L+++       + +A E+ RQ+ L E+K+ L+ + AS GL +  R+ LFL++P +L +      G+ +G +SD +L
Sbjct:  253 IPLHILESKYELPLKEVADQIGVSLTMMKQICRHYKIKRWPHRQMKSIMKTLHQLKDRLNMVDPNSSDAQEIMRQVQLTEQKKSLITKMASRGLNAEERSLLFLSHPGELNKLLVPGEGEDEGELSDGSL 382          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17449.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTG3_9STRA2.360e-4376.58Putative NIN-like transcription factor n=1 Tax=Tri... [more]
A0A835Z1M5_9STRA3.860e-4072.97Putative NIN-like transcription factor n=1 Tax=Tri... [more]
H6WBB7_VAULI1.100e-3767.57Putative NIN-like transcription factor n=1 Tax=Vau... [more]
A0A835YN08_9STRA1.590e-3464.76RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A835Z7T4_9STRA1.460e-2149.50RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A6H5JS66_9PHAE4.780e-2045.95RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A836CMG7_9STRA5.580e-2047.71RWP-RK domain-containing protein n=1 Tax=Tribonema... [more]
D8LTZ5_ECTSI8.540e-2045.05Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A7S3UTA5_HETAK2.690e-1949.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3YET5_HETAK8.290e-1840.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17449contigP-wetherbeei_contig17449:364..1107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LTZ5
PFAMsRWP-RK
Model size744
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.4e-20
EggNOG OGs2E5A6@1|root,2SC46@2759|Eukaryota
DescriptionRWP-RK domain
Cds size744
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186117.9293368-CDS-P-wetherbeei_contig17449:363..11071683186117.9293368-CDS-P-wetherbeei_contig17449:363..1107Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17449 364..1107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17449.1.1prot_P-wetherbeei_contig17449.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17449 364..1107 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17449.1.1

>prot_P-wetherbeei_contig17449.1.1 ID=prot_P-wetherbeei_contig17449.1.1|Name=mRNA_P-wetherbeei_contig17449.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=248bp
MITLELLQEYYHVPLVEVAKELGMSLTMLKKICRKFGIQRWPHRQIRSLN
KTMQELQEKTAAAATAEEAAELQRQMSLLEKKRMLVMRGASSGLQSALRN
ALFLTNPQDLFEGGDGDGAISDAALLRASSTVKTAAKSAGGAKCAAAAAS
GEPAAAAQAVPVSPLQAAKSQPPVYPELAQQQHQTHQQQQQHHHPYLQHN
YIVQQQLQVQQQMRQQYERQQAAAAAVAGFAPSQALPSAAAAAASQHQ
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mRNA from alignment at P-wetherbeei_contig17449:364..1107-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17449.1.1 ID=mRNA_P-wetherbeei_contig17449.1.1|Name=mRNA_P-wetherbeei_contig17449.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig17449:364..1107- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCACCCTCGAGCTCCTGCAAGAATACTACCATGTGCCGCTCGTGGA GGTGGCGAAGGAGCTCGGCATGTCGCTGACGATGCTCAAGAAGATCTGCC GCAAGTTTGGCATCCAGCGATGGCCCCACCGGCAGATCCGTTCCCTGAAC AAGACCATGCAGGAGCTGCAGGAGAAGACGGCCGCGGCGGCGACGGCGGA GGAGGCGGCGGAGCTTCAACGGCAAATGTCGCTGCTGGAGAAGAAGCGCA TGCTCGTCATGCGTGGAGCCTCAAGCGGCCTGCAGTCGGCACTGCGCAAT GCGCTCTTCTTGACCAACCCTCAGGATCTTTTTGAGGGCGGCGACGGCGA CGGGGCAATCTCCGACGCGGCGCTGCTCCGGGCCAGCAGCACCGTAAAGA CTGCCGCCAAGTCCGCCGGAGGCGCAAAGTGCGCCGCGGCGGCCGCCAGC GGAGAGCCGGCCGCGGCAGCGCAGGCCGTACCGGTGTCGCCGCTGCAGGC CGCCAAGTCCCAACCGCCTGTCTACCCGGAATTGGCGCAGCAGCAGCACC AGACGCACCAGCAGCAGCAGCAGCACCACCACCCGTACCTGCAGCACAAC TACATTGTACAGCAGCAGCTCCAGGTACAGCAGCAGATGCGCCAGCAGTA CGAGCGGCAGCAGGCCGCGGCGGCCGCGGTAGCGGGCTTTGCGCCGTCGC AGGCGCTGCCGAGCGCCGCCGCTGCGGCCGCGTCGCAGCACCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17449:364..1107-

>mRNA_P-wetherbeei_contig17449.1.1 ID=mRNA_P-wetherbeei_contig17449.1.1|Name=mRNA_P-wetherbeei_contig17449.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=744bp|location=Sequence derived from alignment at P-wetherbeei_contig17449:364..1107- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCACCCTCGAGCTCCTGCAAGAATACTACCATGTGCCGCTCGTGGA
GGTGGCGAAGGAGCTCGGCATGTCGCTGACGATGCTCAAGAAGATCTGCC
GCAAGTTTGGCATCCAGCGATGGCCCCACCGGCAGATCCGTTCCCTGAAC
AAGACCATGCAGGAGCTGCAGGAGAAGACGGCCGCGGCGGCGACGGCGGA
GGAGGCGGCGGAGCTTCAACGGCAAATGTCGCTGCTGGAGAAGAAGCGCA
TGCTCGTCATGCGTGGAGCCTCAAGCGGCCTGCAGTCGGCACTGCGCAAT
GCGCTCTTCTTGACCAACCCTCAGGATCTTTTTGAGGGCGGCGACGGCGA
CGGGGCAATCTCCGACGCGGCGCTGCTCCGGGCCAGCAGCACCGTAAAGA
CTGCCGCCAAGTCCGCCGGAGGCGCAAAGTGCGCCGCGGCGGCCGCCAGC
GGAGAGCCGGCCGCGGCAGCGCAGGCCGTACCGGTGTCGCCGCTGCAGGC
CGCCAAGTCCCAACCGCCTGTCTACCCGGAATTGGCGCAGCAGCAGCACC
AGACGCACCAGCAGCAGCAGCAGCACCACCACCCGTACCTGCAGCACAAC
TACATTGTACAGCAGCAGCTCCAGGTACAGCAGCAGATGCGCCAGCAGTA
CGAGCGGCAGCAGGCCGCGGCGGCCGCGGTAGCGGGCTTTGCGCCGTCGC
AGGCGCTGCCGAGCGCCGCCGCTGCGGCCGCGTCGCAGCACCAG
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