mRNA_P-wetherbeei_contig17238.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17238.1.1
Unique NamemRNA_P-wetherbeei_contig17238.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17238.1.1 vs. uniprot
Match: A0A2I0V8C2_9ASPA (Uncharacterized protein n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0V8C2_9ASPA)

HSP 1 Score: 152 bits (383), Expect = 2.700e-41
Identity = 77/180 (42.78%), Postives = 107/180 (59.44%), Query Frame = 1
Query:  427 MFEWHGSRYLGAAHGLAGIALAMMQGVRAIHGASSXXXXXXXXXXXXXXXXILLPSPEREALEHARGTLRFLVSLQLPSGNFPSRPEAERDRLVQWCHGAPGVVLALAEGYGLFGDERFAAAAARGSDGIWRRGLLVKGNGLCHGVAGNAYAFLSLWRVTGDAKHLYRPHRFAEFAVSKA 966
            M+EWHG +Y GAAHGLAGI   +M                                 + E +E+ +GTL +++  + PSGN+PS   +E DRLV WCHGAPG+ L L +   +FGDERF  AA   ++ +W RGLL +  G+CHG++GNAY FLSL+R+TG+A++LYR   FA F + +A
Sbjct:    1 MYEWHGKKYWGAAHGLAGIMHVLMD-----------------------------MELKAEEIEYVKGTLLYMIKNRFPSGNYPSSENSETDRLVHWCHGAPGITLTLVKAAQVFGDERFFQAAVDAAEVVWNRGLLRR-VGICHGISGNAYVFLSLFRLTGNAEYLYRAKAFACFLLDRA 150          
BLAST of mRNA_P-wetherbeei_contig17238.1.1 vs. uniprot
Match: A0A7J8YMU8_GOSAI (Uncharacterized protein n=1 Tax=Gossypium aridum TaxID=34290 RepID=A0A7J8YMU8_GOSAI)

HSP 1 Score: 151 bits (382), Expect = 3.800e-41
Identity = 76/180 (42.22%), Postives = 106/180 (58.89%), Query Frame = 1
Query:  427 MFEWHGSRYLGAAHGLAGIALAMMQGVRAIHGASSXXXXXXXXXXXXXXXXILLPSPEREALEHARGTLRFLVSLQLPSGNFPSRPEAERDRLVQWCHGAPGVVLALAEGYGLFGDERFAAAAARGSDGIWRRGLLVKGNGLCHGVAGNAYAFLSLWRVTGDAKHLYRPHRFAEFAVSKA 966
            M+EWHG +Y GAAHGLAGI   +M                                 + + +E+ +GTLR+++  + PSGN+PS   +E DRLV WCHGAPG+ L L +   +FGD+ F  AA  G + +W+RGLL K  G+CHG++GNAY FLSL+R+TG+ ++LYR   FA F   +A
Sbjct:    1 MYEWHGKKYWGAAHGLAGIIHVLMD-----------------------------TELKPDEVEYVKGTLRYIIKNRFPSGNYPSSEGSESDRLVHWCHGAPGITLTLVKAAEVFGDKEFLQAALDGGEVVWKRGLL-KRVGICHGISGNAYVFLSLYRLTGNVEYLYRAKAFASFLSDRA 150          
BLAST of mRNA_P-wetherbeei_contig17238.1.1 vs. uniprot
Match: A0A452YKH3_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YKH3_AEGTS)

HSP 1 Score: 151 bits (382), Expect = 8.080e-41
Identity = 78/183 (42.62%), Postives = 108/183 (59.02%), Query Frame = 1
Query:  424 LMFEWHGSRYLGAAHGLAGIALAMMQGVRAIHGASSXXXXXXXXXXXXXXXXILLPSPEREALEHARGTLRFLVSLQLPSGNFPSRPEAERDRLVQWCHGAPGVVLALAEGYGLFGDERFAAAAARGSDGIWRRGLLVKGNGLCHGVAGNAYAFLSLWRVTGDAKHLYRPHRFAEFAVSKAAR 972
            LM+EWHG +Y GAAHGLAGI   +M                                 + +  +  + TLR+++S + PSGN+PS  ++E DRLV WCHGAPGV L LA+ Y +F D+ F  +AA  ++ +W RGLL K  G+CHG++GNAY FLSL+R+TG+ ++LYR   FA F +  A R
Sbjct:   26 LMYEWHGKKYWGAAHGLAGIMHVLMH-----------------------------TELKLDEQDDVKNTLRYMISNRFPSGNYPSSEDSESDRLVHWCHGAPGVALTLAKAYQVFQDDHFKQSAAEAAEVVWNRGLL-KRVGICHGISGNAYVFLSLYRLTGNVEYLYRAKAFACFLLENADR 178          
BLAST of mRNA_P-wetherbeei_contig17238.1.1 vs. uniprot
Match: A0A8J5WKA5_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WKA5_ZIZPA)

HSP 1 Score: 155 bits (392), Expect = 8.670e-41
Identity = 103/287 (35.89%), Postives = 140/287 (48.78%), Query Frame = 1
Query:  106 LLKLQDTAVSDRVPFEQLYGTAGYLSALLFVRSLPGILGAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPDSAIRACLGRLVAEGARGAAEAGLQPPALMFEWHGSRYLGAAHGLAGIALAMMQGVRAIHGASSXXXXXXXXXXXXXXXXILLPSPEREALEHARGTLRFLVSLQLPSGNFPSRPEAERDRLVQWCHGAPGVVLALAEGYGLFGDERFAAAAARGSDGIWRRGLLVKGNGLCHGVAGNAYAFLSLWRVTGDAKHLYRPHRFAEFAVSKA 966
            L    +  V+++VP E LYG AGYL A LF+                                             +P   I +    ++ EG R  +  G  P  LM+EWHG +Y GAAHGLAGI   +M                            L P  +    +  + TLR++++ + PSGN+PS   +E DRLV WCHGAPGV L LA+ Y +F DE F  +AA  ++ +W RGLL K  G+CHGV+GNAY FLSL+R+TG+ ++LYR   FA F + KA
Sbjct:   95 LSSFDEIIVTEKVPNELLYGRAGYLWACLFLNK-------------------------------------HIREKTIPLEHIGSVAKDIIKEG-RKLSNKGSSP--LMYEWHGKKYWGAAHGLAGIMHVLMH-------------------------TELKPDEQ----DDVKNTLRYMITNRYPSGNYPSSEGSESDRLVHWCHGAPGVALTLAKAYEVFHDEHFKQSAAEAAEVVWNRGLL-KRVGICHGVSGNAYVFLSLYRLTGNVEYLYRAKAFACFLLEKA 311          
BLAST of mRNA_P-wetherbeei_contig17238.1.1 vs. uniprot
Match: B6TCV9_MAIZE (LanC-like protein 2 n=1 Tax=Zea mays TaxID=4577 RepID=B6TCV9_MAIZE)

HSP 1 Score: 156 bits (394), Expect = 1.170e-40
Identity = 103/287 (35.89%), Postives = 139/287 (48.43%), Query Frame = 1
Query:  106 LLKLQDTAVSDRVPFEQLYGTAGYLSALLFVRSLPGILGAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPDSAIRACLGRLVAEGARGAAEAGLQPPALMFEWHGSRYLGAAHGLAGIALAMMQGVRAIHGASSXXXXXXXXXXXXXXXXILLPSPEREALEHARGTLRFLVSLQLPSGNFPSRPEAERDRLVQWCHGAPGVVLALAEGYGLFGDERFAAAAARGSDGIWRRGLLVKGNGLCHGVAGNAYAFLSLWRVTGDAKHLYRPHRFAEFAVSKA 966
            L    +  ++++VP E LYG AGYL A LF+                                             +P   I +    ++ EG RG A  G  P  LM+EWHG +Y GAAHGLAGI   +M                            L P  +    +  + TLR+++  + PSGN+PS    E D LV WCHGAPGV L LA+ Y +F D+ F  +AA  ++ +W RGLL K  G+CHGV+GNAYAFLSL+R+TG+ ++LYR   FA F + KA
Sbjct:  140 LSSFDEITITEKVPNELLYGRAGYLWACLFLNK-------------------------------------HLSEKTIPLDHINSVAKDIINEG-RGFASKGSSP--LMYEWHGKKYWGAAHGLAGIMHVLMH-------------------------TELKPDEQ----DDVKNTLRYMIKNKFPSGNYPSSEGNESDHLVHWCHGAPGVALTLAKAYEVFHDDYFEQSAAEAAEVVWNRGLL-KRVGICHGVSGNAYAFLSLYRLTGNVEYLYRAKAFACFLLEKA 356          
BLAST of mRNA_P-wetherbeei_contig17238.1.1 vs. uniprot
Match: A0A2U1PNE2_ARTAN (G protein coupled receptor n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PNE2_ARTAN)

HSP 1 Score: 155 bits (393), Expect = 2.380e-40
Identity = 107/316 (33.86%), Postives = 150/316 (47.47%), Query Frame = 1
Query:    4 RITLIEGEGGLHALGAALSASAGNSTSAARHVMSLLKLQDTAVSDRVPFEQLYGTAGYLSALLFVRSLPGILGAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPDSAIRACLGRLVAEGARGAAEAGLQPPALMFEWHGSRYLGAAHGLAGIALAMMQGVRAIHGASSXXXXXXXXXXXXXXXXILLPSPEREALEHARGTLRFLVSLQLPSGNFPSRPEAERDRLVQWCHGAPGVVLALAEGYGLFGDERFAAAAARGSDGIWRRGLLVKGNGLCHGVAGNAYAFLSLWRVTGDAKHLYRPHRFAEF 951
            R+T + G+ G+ ALGA ++  + + +    ++    K++   +   +P E LYG AGYL A LF+    G    +                                   + D  I+A  GR +A           +   LM+EWHG RY GAAHGL GI   +M  V                                + +E  +GTL +++  + PSGN+PS  E+E DRLV WCHGAPGV L LA+   +FG E F  AA    + +W+RGLL K  G+CHG++GN Y FL+L+R+TGDAK LYR   FA F
Sbjct:  102 RVTFLCGQAGISALGAVVAKQSNDDSLCDEYLTIFRKIK---LPKDLPNELLYGRAGYLWACLFINKNLGENTISS--THMVKFKKTIMSCFSVTFCAMIIHLILRFQRTIKDEIIKA--GRKLAT----------RECPLMYEWHGKRYWGAAHGLVGIMNVLMDMVLT-----------------------------EDEMEDVKGTLLYMIKNRFPSGNYPSSEESESDRLVHWCHGAPGVALTLAKAAKVFGGEEFHKAAVEAGEVVWKRGLL-KRVGICHGISGNTYVFLALYRLTGDAKFLYRAKAFASF 370          
BLAST of mRNA_P-wetherbeei_contig17238.1.1 vs. uniprot
Match: A0A1D6KRT3_MAIZE (LanC-like protein 2 n=11 Tax=Panicoideae TaxID=147369 RepID=A0A1D6KRT3_MAIZE)

HSP 1 Score: 156 bits (394), Expect = 2.930e-40
Identity = 103/287 (35.89%), Postives = 139/287 (48.43%), Query Frame = 1
Query:  106 LLKLQDTAVSDRVPFEQLYGTAGYLSALLFVRSLPGILGAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPDSAIRACLGRLVAEGARGAAEAGLQPPALMFEWHGSRYLGAAHGLAGIALAMMQGVRAIHGASSXXXXXXXXXXXXXXXXILLPSPEREALEHARGTLRFLVSLQLPSGNFPSRPEAERDRLVQWCHGAPGVVLALAEGYGLFGDERFAAAAARGSDGIWRRGLLVKGNGLCHGVAGNAYAFLSLWRVTGDAKHLYRPHRFAEFAVSKA 966
            L    +  ++++VP E LYG AGYL A LF+                                             +P   I +    ++ EG RG A  G  P  LM+EWHG +Y GAAHGLAGI   +M                            L P  +    +  + TLR+++  + PSGN+PS    E D LV WCHGAPGV L LA+ Y +F D+ F  +AA  ++ +W RGLL K  G+CHGV+GNAYAFLSL+R+TG+ ++LYR   FA F + KA
Sbjct:  188 LSSFDEITITEKVPNELLYGRAGYLWACLFLNK-------------------------------------HLSEKTIPLDHINSVAKDIINEG-RGFASKGSSP--LMYEWHGKKYWGAAHGLAGIMHVLMH-------------------------TELKPDEQ----DDVKNTLRYMIKNKFPSGNYPSSEGNESDHLVHWCHGAPGVALTLAKAYEVFHDDYFEQSAAEAAEVVWNRGLL-KRVGICHGVSGNAYAFLSLYRLTGNVEYLYRAKAFACFLLEKA 404          
BLAST of mRNA_P-wetherbeei_contig17238.1.1 vs. uniprot
Match: A0A7C9CYM9_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CYM9_OPUST)

HSP 1 Score: 152 bits (385), Expect = 3.440e-40
Identity = 103/323 (31.89%), Postives = 155/323 (47.99%), Query Frame = 1
Query:    4 RITLIEGEGGLHALGAALSASAGNSTSAARHVMSLLKLQDTAVSDRVPFEQLYGTAGYLSALLFVRSLPGILGAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPDSAIRACLGRLVAEGARGAAEAGLQPPALMFEWHGSRYLGAAHGLAGIALAMMQGVRAIHGASSXXXXXXXXXXXXXXXXILLPSPEREALEHARGTLRFLVSLQLPSGNFPSRPEAERDRLVQWCHGAPGVVLALAEGYGLFGDERFAAAAARGSDGIWRRGLLVKGNGLCHGVAGNAYAFLSLWRVTGDAKHLYRPHRFAEFAVSKAAR 972
            ++T + G  G+ ALGA ++ + G+      ++    K++   +SD +P+E LYG AG+L + LF+    G                                        +  S +R  +  ++  G R     G     LM+EWHG +Y GAAHGLAGI   +M                            +   P+ +  E  + TL +++  + PSGN+PS   +E DRLV WCHGAPGV L +A+   +FGD+ F  AA    + +W+RGLL K  G+CHG++GN Y FL+L+R+TG+A +LYR   FA F   +A R
Sbjct:   23 KVTFLCGRSGVCALGAVVAKAVGDEHLLDHYLAEFGKIE---LSDDLPYELLYGRAGFLWSCLFLNKHLG-------------------------------------KGTISSSTMRGIVTEVIKPGRR----LGKGGCPLMYEWHGKKYWGAAHGLAGIMHVLMD---------------------------MELKPDEQ--EDVKATLHYMIKGRFPSGNYPSSEGSETDRLVHWCHGAPGVALTIAKAAQVFGDKEFLQAAIDAGEVVWKRGLL-KRVGICHGISGNTYVFLTLYRLTGNALYLYRAKAFASFLDDRARR 271          
BLAST of mRNA_P-wetherbeei_contig17238.1.1 vs. uniprot
Match: A0A2K1K1X0_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K1X0_PHYPA)

HSP 1 Score: 155 bits (391), Expect = 3.660e-40
Identity = 114/329 (34.65%), Postives = 159/329 (48.33%), Query Frame = 1
Query:    7 ITLIEGEGGLHALGAALSASAGNSTSAARHVMSLLKL---QDTAVSDR-----VPFEQLYGTAGYLSALLFVRSLPGILGAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPDSAIRACLGRLVAEGARGAAEAGLQPPALMFEWHGSRYLGAAHGLAGIALAMMQGVRAIHGASSXXXXXXXXXXXXXXXXILLPSPEREALEHARGTLRFLVSLQLPSGNFPSRPEAERDRLVQWCHGAPGVVLALAEGYGLFGDE-RFAAAAARGSDGIWRRGLLVKGNGLCHGVAGNAYAFLSLWRVTGDAKHLYRPHRFAEFAVSKA 966
            +T + G+ G++ALGAA + S+G+  S  R++    K+   Q  AV        +P+E LYG AG+L A LFV    G     EG                                 +P S     +  ++A G  GA++   Q P LM++WHGSRY G AHGLAGI   +M                              P  +++  E  +GTLR++++ + PSGN+PS      DRLV WCHGAPG+ + L +   +F DE  F  AA    D +W RGLL K  GLCHG++GN Y FLSL++ TG  +HL+R  +FA F    A
Sbjct:  105 VTFLCGQPGIYALGAAAAKSSGDEQSLHRYLQLFHKVSKNQTLAVGAEEGGMGMPYELLYGRAGFLWAALFVNKHVG-----EG--------------------------------TIPSSTTGPIVDAILAGGRAGASQT--QSP-LMYQWHGSRYWGGAHGLAGIMHTLMH----------------------------FPLNKKDE-EDVKGTLRYMIARRFPSGNYPSSEGNATDRLVHWCHGAPGIAMTLCKASKVFPDEMEFQHAAVEAGDVVWSRGLLRK-LGLCHGISGNTYVFLSLYQSTGGKQHLFRAQQFATFLHKNA 363          
BLAST of mRNA_P-wetherbeei_contig17238.1.1 vs. uniprot
Match: A0A0D6R7W1_ARACU (Uncharacterized protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R7W1_ARACU)

HSP 1 Score: 155 bits (392), Expect = 4.930e-40
Identity = 113/325 (34.77%), Postives = 153/325 (47.08%), Query Frame = 1
Query:    7 ITLIEGEGGLHALGAALSASAGNSTSAARHVMSLLKLQDTAVSDRVPFEQLYGTAGYLSALLFVRSLPGILGAAEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVPDSAIRACLGRLVAEGARGAAEAGLQPP----ALMFEWHGSRYLGAAHGLAGIALAMMQGVRAIHGASSXXXXXXXXXXXXXXXXILLPSPEREALEHARGTLRFLVSLQLPSGNFPSRPEAERDRLVQWCHGAPGVVLALAEGYGLFGDER-FAAAAARGSDGIWRRGLLVKGNGLCHGVAGNAYAFLSLWRVTGDAKHLYRPHRFAEFAVSKA 966
            +T I G+ G++ALGAA +  + N  S   ++    K+ +   S  VP+E LYG AG+L A  FV    G    AE                                  +P SA    +  ++         AG   P     LM+EWHG +Y GAAHGLAGI   +M      H   S                       +EA E  +GTL +++  Q  SGN+PS  E+  DRLV WCHGAPG+ L L +   +F +E  F  AA    + +W RGLL +  G+CHG++GNAY FL+L R+TGD KHLYR   FA F + +A
Sbjct:  147 VTFICGQAGVYALGAAAAKCSENQQSLEHYLSLFKKIPERLQSYDVPYELLYGRAGFLWAAAFVNKYVG----AE---------------------------------TIPTSATVCVVDDIL--------RAGKSLPHKYCPLMYEWHGKKYWGAAHGLAGIMHVLM------HFQLS-----------------------KEAEEDLKGTLHYMIEHQFHSGNYPSSEESSTDRLVHWCHGAPGITLTLCKAAQVFPEENDFQQAAVDAGEVVWNRGLLRR-VGICHGISGNAYVFLALHRLTGDRKHLYRAKAFASFLLDQA 396          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17238.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2I0V8C2_9ASPA2.700e-4142.78Uncharacterized protein n=2 Tax=Dendrobium catenat... [more]
A0A7J8YMU8_GOSAI3.800e-4142.22Uncharacterized protein n=1 Tax=Gossypium aridum T... [more]
A0A452YKH3_AEGTS8.080e-4142.62Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A8J5WKA5_ZIZPA8.670e-4135.89Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
B6TCV9_MAIZE1.170e-4035.89LanC-like protein 2 n=1 Tax=Zea mays TaxID=4577 Re... [more]
A0A2U1PNE2_ARTAN2.380e-4033.86G protein coupled receptor n=2 Tax=Artemisia annua... [more]
A0A1D6KRT3_MAIZE2.930e-4035.89LanC-like protein 2 n=11 Tax=Panicoideae TaxID=147... [more]
A0A7C9CYM9_OPUST3.440e-4031.89Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
A0A2K1K1X0_PHYPA3.660e-4034.65Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A0D6R7W1_ARACU4.930e-4034.77Uncharacterized protein n=1 Tax=Araucaria cunningh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17238contigP-wetherbeei_contig17238:1..1204 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog29730.Gorai.N018400.1
PFAMsLANC_like
Model size1011
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0008150,GO:0008289,GO:0009787,GO:0009791,GO:0009966,GO:0010154,GO:0010162,GO:0010231,GO:0010427,GO:0010431,GO:0010646,GO:0016020,GO:0019840,GO:0019898,GO:0021700,GO:0022414,GO:0022611,GO:0023051,GO:0031406,GO:0032501,GO:0032502,GO:0032504,GO:0033293,GO:0036094,GO:0042562,GO:0043167,GO:0043168,GO:0043177,GO:0043178,GO:0044425,GO:0044464,GO:0048316,GO:0048583,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0061458,GO:0065007,GO:0071695,GO:0071944,GO:0097437,GO:1901419,GO:1905957
Exons2
Evalue2.89e-43
EggNOG OGsKOG2787@1|root,KOG2787@2759|Eukaryota,37JQK@33090|Viridiplantae,3G81W@35493|Streptophyta
Ec32 ortholog descriptionLanC lantibiotic synthetase component C-like 2
Ec32 orthologEc-25_001920.1
DescriptionlanC-like protein
Cds size1011
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.6194844-CDS-P-wetherbeei_contig17238:0..1211683186111.6194844-CDS-P-wetherbeei_contig17238:0..121Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17238 1..121 -
1683186111.629376-CDS-P-wetherbeei_contig17238:314..12041683186111.629376-CDS-P-wetherbeei_contig17238:314..1204Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17238 315..1204 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17238.1.1prot_P-wetherbeei_contig17238.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17238 1..1204 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17238.1.1

>prot_P-wetherbeei_contig17238.1.1 ID=prot_P-wetherbeei_contig17238.1.1|Name=mRNA_P-wetherbeei_contig17238.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=337bp
QRITLIEGEGGLHALGAALSASAGNSTSAARHVMSLLKLQDTAVSDRVPF
EQLYGTAGYLSALLFVRSLPGILGAAEGGGGLGGGGQFGDGGGRTCSNDA
VAAAAGAAAAAVPDSAIRACLGRLVAEGARGAAEAGLQPPALMFEWHGSR
YLGAAHGLAGIALAMMQGVRAIHGASSAAAAARGGGGGGGGGGILLPSPE
REALEHARGTLRFLVSLQLPSGNFPSRPEAERDRLVQWCHGAPGVVLALA
EGYGLFGDERFAAAAARGSDGIWRRGLLVKGNGLCHGVAGNAYAFLSLWR
VTGDAKHLYRPHRFAEFAVSKAARRQQRVPAHPHSVL
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mRNA from alignment at P-wetherbeei_contig17238:1..1204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17238.1.1 ID=mRNA_P-wetherbeei_contig17238.1.1|Name=mRNA_P-wetherbeei_contig17238.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1204bp|location=Sequence derived from alignment at P-wetherbeei_contig17238:1..1204- (Phaeothamnion wetherbeei SAG_119_79)
CAGCGCATCACGCTCATTGAAGGGGAAGGCGGCCTCCATGCACTTGGCGC GGCGCTCTCTGCCAGCGCCGGCAACTCGACTTCCGCTGCCCGCCACGTGA TGAGCCTGCTGAAGCTGCAGGACACTGCCGTTTCCGACCGCGTGCCGTTC GAGCAGCTCTACGGAACCGCTGGCTACCTGTCGGCGCTTCTCTTTGTCCG GTCGCTGCCCGGCATCTTGGGCGCGGCGGAGGGCGGCGGCGGCCTTGGCG GCGGCGGCCAATTTGGCGACGGCGGCGGTCGCACCTGCAGCAACGACGCT GTCGCCGCGGCCGCCGGGGCTGCGGCCGCCGCGGTGCCCGACAGCGCCAT CCGAGCCTGTCTCGGCCGCCTGGTGGCGGAGGGCGCGCGCGGCGCCGCGG AGGCCGGTCTGCAGCCGCCCGCCCTCATGTTCGAGTGGCACGGCTCGCGC TACCTCGGCGCCGCCCATGGCCTGGCCGGCATCGCGCTGGCCATGATGCA GGGAGTCCGCGCCATCCATGGGGCGTCGTCGGCAGCGGCGGCGGCCCGCG GCGGCGGCGGCGGCGGCGGCGGTGGAGGCATACTGCTGCCGTCGCCGGAG CGCGAGGCGCTGGAGCATGCCCGCGGGACGCTGCGCTTCCTGGTGTCACT GCAGCTGCCGTCGGGCAACTTCCCCAGTCGGCCCGAGGCGGAGCGGGACC GGCTGGTGCAGTGGTGCCACGGCGCGCCAGGCGTCGTCCTGGCGCTCGCG GAGGGGTACGGGCTCTTCGGCGACGAGCGCTTCGCAGCTGCGGCGGCGCG CGGGTCGGACGGCATCTGGCGCCGTGGGCTACTCGTCAAGGGCAACGGCC TCTGTCACGGCGTGGCTGGCAACGCATATGCCTTTTTGAGGTGAGTGATT GAGGTAAACAGTGTTTGGTGTATGAGGAAGGAGGAAGTCTTTGACGGCGG CAATGCCTGCTCGGGTAGGGACGGATTCTCGTGAAGGCGTTTTTTGTGGA AGAGGTTAGATGCTGATGCATCTGCATTTTCCTGCCGTTTCCTTCTGTAC TCCCGTGGATTCTGGCTTCCCTGCTCGCGGCAGCCTCTGGCGTGTGACGG GCGACGCCAAGCACCTCTACCGCCCGCACCGCTTCGCCGAGTTCGCCGTG TCGAAGGCGGCGCGGCGGCAGCAGCGCGTGCCCGCCCACCCGCACTCGGT GCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17238:1..1204-

>mRNA_P-wetherbeei_contig17238.1.1 ID=mRNA_P-wetherbeei_contig17238.1.1|Name=mRNA_P-wetherbeei_contig17238.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1011bp|location=Sequence derived from alignment at P-wetherbeei_contig17238:1..1204- (Phaeothamnion wetherbeei SAG_119_79)
CAGCGCATCACGCTCATTGAAGGGGAAGGCGGCCTCCATGCACTTGGCGC
GGCGCTCTCTGCCAGCGCCGGCAACTCGACTTCCGCTGCCCGCCACGTGA
TGAGCCTGCTGAAGCTGCAGGACACTGCCGTTTCCGACCGCGTGCCGTTC
GAGCAGCTCTACGGAACCGCTGGCTACCTGTCGGCGCTTCTCTTTGTCCG
GTCGCTGCCCGGCATCTTGGGCGCGGCGGAGGGCGGCGGCGGCCTTGGCG
GCGGCGGCCAATTTGGCGACGGCGGCGGTCGCACCTGCAGCAACGACGCT
GTCGCCGCGGCCGCCGGGGCTGCGGCCGCCGCGGTGCCCGACAGCGCCAT
CCGAGCCTGTCTCGGCCGCCTGGTGGCGGAGGGCGCGCGCGGCGCCGCGG
AGGCCGGTCTGCAGCCGCCCGCCCTCATGTTCGAGTGGCACGGCTCGCGC
TACCTCGGCGCCGCCCATGGCCTGGCCGGCATCGCGCTGGCCATGATGCA
GGGAGTCCGCGCCATCCATGGGGCGTCGTCGGCAGCGGCGGCGGCCCGCG
GCGGCGGCGGCGGCGGCGGCGGTGGAGGCATACTGCTGCCGTCGCCGGAG
CGCGAGGCGCTGGAGCATGCCCGCGGGACGCTGCGCTTCCTGGTGTCACT
GCAGCTGCCGTCGGGCAACTTCCCCAGTCGGCCCGAGGCGGAGCGGGACC
GGCTGGTGCAGTGGTGCCACGGCGCGCCAGGCGTCGTCCTGGCGCTCGCG
GAGGGGTACGGGCTCTTCGGCGACGAGCGCTTCGCAGCTGCGGCGGCGCG
CGGGTCGGACGGCATCTGGCGCCGTGGGCTACTCGTCAAGGGCAACGGCC
TCTGTCACGGCGTGGCTGGCAACGCATATGCCTTTTTGAGCCTCTGGCGT
GTGACGGGCGACGCCAAGCACCTCTACCGCCCGCACCGCTTCGCCGAGTT
CGCCGTGTCGAAGGCGGCGCGGCGGCAGCAGCGCGTGCCCGCCCACCCGC
ACTCGGTGCTC
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