mRNA_P-wetherbeei_contig17234.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17234.1.1
Unique NamemRNA_P-wetherbeei_contig17234.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A7C4XKN1_9HYPH (LPS export ABC transporter permease LptG n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XKN1_9HYPH)

HSP 1 Score: 369 bits (946), Expect = 8.250e-125
Identity = 186/276 (67.39%), Postives = 233/276 (84.42%), Query Frame = 1
Query:    1 MISTRILGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
            M    IL  YL RR+LTA+L TF +C++L+FMIDFVE+LRQSGK+GSVP +TLIWLT LRLPAY+EL+LAFAVQVG+IAALL+LNR+SELAVMR+AGMSVWQFLRPA +++L++G FA+ VYNP AA ARAE+ERLF++VFGRESNF+Q+  +GAWLRQEGADGSSV++A     RG++LV V+ + +D+ G F ER++GDRA L DG+W VENA V+R  + PERY  + VSTYLS ER++DALGS IS+SFWELPG+IEATEKAG+S  RF+IQ
Sbjct:    1 MTPASILTRYLLRRFLTAILATFAVCSLLVFMIDFVEMLRQSGKYGSVPFSTLIWLTALRLPAYTELMLAFAVQVGSIAALLVLNRRSELAVMRSAGMSVWQFLRPALLLSLVLGTFAVAVYNPLAAAARAESERLFAEVFGRESNFLQTGGSGAWLRQEGADGSSVVNAAGVTNRGMQLVSVMFLLFDRDGRFQERIDGDRASLRDGFWQVENALVSRPHEQPERYPTYVVSTYLSQERIQDALGSTISVSFWELPGLIEATEKAGISPYRFQIQ 276          
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A2W4RMM4_9PROT (LPS export ABC transporter permease LptG (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4RMM4_9PROT)

HSP 1 Score: 342 bits (877), Expect = 1.810e-115
Identity = 171/270 (63.33%), Postives = 221/270 (81.85%), Query Frame = 1
Query:   19 LGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
            L  Y+AR ++  +LGTF +CA+LIFMIDF+EVLRQSGK GSVPA TL+WLTLLRLPAY+E+LLAF+V VG+IA+LL L+R+SELAV+RAAGMSVWQFL P  VVA ++G   +  YNP AA+ARAEAE LF++VFG+ESNF++++A G+WLRQ+GADGSSV++A      GL L  V + QYD+ G FVER+E  RA LH+GYW +E+  VA + + P+RYD++ +STYL+PERVRDALGS IS+SFWELPG+IE  E+AGLSA+ ++IQ
Sbjct:    6 LKLYIARHFVIGILGTFLVCALLIFMIDFIEVLRQSGKRGSVPAATLVWLTLLRLPAYTEILLAFSVLVGSIASLLHLSRRSELAVIRAAGMSVWQFLSPGIVVAFILGVLTVAFYNPLAAKARAEAEELFAEVFGKESNFLKTRA-GSWLRQDGADGSSVMNAGGVADGGLRLFTVTVFQYDREGRFVERIEAKRATLHEGYWELEDVQVAGVGREPQRYDRYLISTYLTPERVRDALGSTISLSFWELPGLIEVVERAGLSAAPYKIQ 274          
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A2W4L1Z2_9PROT (LPS export ABC transporter permease LptG n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4L1Z2_9PROT)

HSP 1 Score: 333 bits (855), Expect = 4.930e-111
Identity = 166/270 (61.48%), Postives = 220/270 (81.48%), Query Frame = 1
Query:   19 LGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
            L  Y+AR ++  +LGTF +CA+LIFMIDFVEVLRQSGKHGSVPA TL+WLTLLRLPAY+E+LLAFAV VG+IA++L L+R+SELAV+RAAGMSVWQF+ P  V+A ++G   +  YNP AA ARA+AE LF++VFG+ESNF++++A G+WLRQ+GADGSSV++A      GL L  V I Q+D+ G FVER+E  +A L DGYW +++A VA + + PERY+++ VSTYL+PERV+DALGS IS+SFW+LP +I+  E+AGLSA+ +R+Q
Sbjct:    6 LKLYIARHFIIGILGTFAVCALLIFMIDFVEVLRQSGKHGSVPAATLVWLTLLRLPAYTEILLAFAVLVGSIASMLQLSRRSELAVIRAAGMSVWQFISPGIVLAFILGVLTVVFYNPLAASARAQAEELFAEVFGKESNFLKTRA-GSWLRQDGADGSSVLNAGGVADGGLRLFTVTIFQFDREGRFVERIEAKQATLQDGYWELQDALVAGVGRQPERYERYLVSTYLTPERVQDALGSVISLSFWQLPAVIDVVERAGLSAAPYRVQ 274          
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A433A812_HYPSQ (LPS export ABC transporter permease LptG (Fragment) n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A433A812_HYPSQ)

HSP 1 Score: 315 bits (807), Expect = 2.420e-104
Identity = 152/267 (56.93%), Postives = 208/267 (77.90%), Query Frame = 1
Query:   28 YLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
            Y+AR +L A++ T  +CA+LIFMIDFVE+LRQS K G+VP  TL+++  LRL AY E LL FAV VGA++ALL LNRKSELAVMRA GMSVWQFL P  +V L++G   +TVYNP AAR RA++E++F+K FG ++N +++Q  G+W+RQ+G DG S++ A AA  RGL L GV+I+ YD+SGHF ERV+  +A L DGYW +++A V+R+ Q PE++D + VSTYL+P+RV++ALG+  S+SFW+LP +I+A +KAGLS  R R+Q
Sbjct:   10 YIARMFLVAIVATLAVCAMLIFMIDFVELLRQSSKFGNVPVPTLVYIACLRLGAYVEFLLGFAVLVGALSALLYLNRKSELAVMRAGGMSVWQFLAPGLIVGLIVGVLGVTVYNPLAARGRAKSEQVFAKAFGNDTNLLRAQGGGSWIRQDGVDGESILGAAAASNRGLTLTGVMIIAYDRSGHFTERVDAGQAELKDGYWELKDAWVSRLGQQPEKFDSYLVSTYLTPDRVQEALGTVFSVSFWDLPDLIDAADKAGLSTERLRVQ 276          
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A6I3KES1_9HYPH (LPS export ABC transporter permease LptG n=2 Tax=Hyphomicrobium TaxID=81 RepID=A0A6I3KES1_9HYPH)

HSP 1 Score: 317 bits (811), Expect = 2.440e-104
Identity = 163/276 (59.06%), Postives = 203/276 (73.55%), Query Frame = 1
Query:    1 MISTRILGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
            M  TR LG Y+A R++ A+L TF LC+VLI++IDFVE+LRQSGK G VP  TL  + +LRLPAY+E L+AFAV VG+I ALL L+RKSEL VMRA GMSVWQFLRP  VVA L+G   + V+NP AA  R  AE LF+  FGRE+N ++S++   WLRQ GADG SVI A  A  +GL L GV    +D  GHFVERV+G RA LH+GYW V+ A VAR+ + PE++D + VSTYL+P+RV DALG+  S+SFWE+P +IE  EKA LS+ R RIQ
Sbjct:    1 MFGTRTLGHYIAARFMMAILTTFLLCSVLIYLIDFVELLRQSGKQGEVPLLTLALIAILRLPAYAEFLIAFAVLVGSITALLQLSRKSELTVMRAGGMSVWQFLRPGIVVAFLVGVLTVAVFNPMAAAGRDAAENLFADAFGRETNLLRSRSGSTWLRQNGADGQSVISAAVATNKGLTLHGVSAFVFDNEGHFVERVDGKRADLHEGYWEVKEAWVARIGREPEKFDIYLVSTYLTPDRVTDALGTVFSVSFWEMPALIEVAEKAKLSSDRLRIQ 276          
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A0D6JIB3_9HYPH (Permease n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A0D6JIB3_9HYPH)

HSP 1 Score: 317 bits (811), Expect = 2.780e-104
Identity = 161/275 (58.55%), Postives = 210/275 (76.36%), Query Frame = 1
Query:    4 ISTRILGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
            I T  L +Y+ R +LT +LGTF LC+ LIFMIDFVE+LRQ+GK+GSVPA  L W+ LLRLPAY+E LL FA+  G+IAALL L+RKSELAVMRA GMSVWQFL P F+VA+ +G FA T+YNP AA AR +AE +F+  FGR+ N +++++  +WLRQ G DG SVI+A  A  +GL L GV++  YD  G FVER++  RA L +GYW + +A V+ + + P++YD + VSTYL+P+RV+DALG+AIS+SFWELPG+IE  EKA LSA+  RIQ
Sbjct:    6 IGTATLNWYVGRWFLTTILGTFLLCSALIFMIDFVELLRQAGKYGSVPAWLLAWMALLRLPAYTEFLLPFAIMTGSIAALLQLSRKSELAVMRAGGMSVWQFLLPGFIVAVTLGVFATTLYNPLAAAAREKAEAIFADAFGRDVNLLRAKSGESWLRQNGIDGQSVINAVRASNQGLTLTGVIVFVYDNDGGFVERIDAARADLKEGYWELRDAWVSGVGREPQKYDFYMVSTYLTPDRVQDALGTAISVSFWELPGLIEVAEKAKLSATTLRIQ 280          
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: UPI0009306AEE (LPS export ABC transporter permease LptG n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009306AEE)

HSP 1 Score: 314 bits (805), Expect = 2.050e-103
Identity = 159/272 (58.46%), Postives = 204/272 (75.00%), Query Frame = 1
Query:   13 RILGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
            R LGFY+ +R+L A+   F LC+VLIF+IDFVE+LRQSGK+G V   TL ++ LLRLPAY+E L+AFAV VG+IAALL L+RKSEL VMRA GMSVWQFLRP  +V  ++G     V+NP AA  RA AE ++++ FG+E+N ++S++  +WLRQ G DG SVI+A  A  RGL L GV +  +D  G FVERV+G RA LH+GYW V+ A V R+ + PE++D + VSTYL+P+RV DALG+  S+SFWELPG+IE  EKA LSASR RIQ
Sbjct:    6 RTLGFYIGKRFLLAIFAVFLLCSVLIFLIDFVELLRQSGKYGEVSVVTLAFIALLRLPAYAEFLIAFAVLVGSIAALLQLSRKSELTVMRAGGMSVWQFLRPGIIVGFMVGLLTAMVFNPLAAAGRAAAESVYAEAFGKETNLLRSKSGASWLRQNGTDGQSVINAAIATNRGLTLHGVSVFIFDNEGRFVERVDGKRADLHEGYWEVKEAWVVRIGREPEKFDTYLVSTYLTPDRVSDALGTVFSVSFWELPGLIEVAEKAKLSASRLRIQ 277          
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A2S5P7L8_HYPSQ (LPS export ABC transporter permease LptG n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5P7L8_HYPSQ)

HSP 1 Score: 311 bits (796), Expect = 4.420e-102
Identity = 160/267 (59.93%), Postives = 202/267 (75.66%), Query Frame = 1
Query:   28 YLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
            Y+AR++LT +LGTF LC+VLIFMIDFVE+LRQSGK+G+VPA  L WL LLRLPAYSE L+ FA+  G+IAALL+L RKSELAVMRA GMSVWQFL P   VA +IG  A+  +NP AA  R +AERLF+  FGR++N + +Q+ G+WLRQ+G DG SVI A AA  RGL+L GV    +  SG FVER++   A L +GYW + +A V R+ Q PER++ + +STYL+PERV+DALGS  S+SF+ELPG+IE  EKA LS  R R+Q
Sbjct:    9 YIARKFLTGILGTFVLCSVLIFMIDFVELLRQSGKYGAVPAWRLAWLALLRLPAYSEFLIGFAMLSGSIAALLLLARKSELAVMRAGGMSVWQFLSPGLAVAFIIGVGAVVAFNPLAAAGRTKAERLFADAFGRDANVLAAQSGGSWLRQDGVDGQSVIGAVAASNRGLKLTGVAAYVFHPSGTFVERIDAASAELKEGYWQISDAWVVRLGQEPERFETYLLSTYLTPERVQDALGSVFSVSFFELPGLIEVAEKAKLSTDRLRVQ 275          
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: UPI000361CF83 (LPS export ABC transporter permease LptG n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000361CF83)

HSP 1 Score: 311 bits (796), Expect = 4.570e-102
Identity = 162/270 (60.00%), Postives = 205/270 (75.93%), Query Frame = 1
Query:   19 LGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
            L  Y+  R+L A+   F LC VLIFMIDFVE+LRQ+GK+GSVPA  L W+T LRLPAY+E+LL FAV VG+I+ALLML RKSELAVMRA GMSVWQFLRP   VA+++G  + TV+NP AA AR  +E+L+S+ FGRES+ +   A+G WLRQ+G DG SV+ A +  +RG EL  V    YDKSG F ERV+  RA L +GYW++E+A V+R+ + PE + ++ +STYL+PERV DALGS IS+SFWELP +I  TEKAGLSAS+ RIQ
Sbjct:    7 LSVYIGMRFLIAIFAVFGLCTVLIFMIDFVELLRQAGKYGSVPAWLLAWITALRLPAYTEILLPFAVLVGSISALLMLARKSELAVMRAGGMSVWQFLRPGAAVAMMLGILSSTVFNPLAATARDSSEKLYSEAFGRESSLLGKGASGTWLRQDGLDGQSVLTAGSTRRRGTELTTVTAFVYDKSGRFSERVDASRAKLEEGYWVLESALVSRVGREPETFGKYLLSTYLTPERVVDALGSVISVSFWELPDLIYVTEKAGLSASKLRIQ 276          
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A7Y4XIP8_HYPSQ (LPS export ABC transporter permease LptG n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y4XIP8_HYPSQ)

HSP 1 Score: 310 bits (793), Expect = 1.300e-101
Identity = 153/270 (56.67%), Postives = 203/270 (75.19%), Query Frame = 1
Query:   19 LGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
            L +Y+ RR+LT ++ T  +C++LIFMID +E+LR +GK+GSVPA +L  + L+RLPAY+E L  FAV VG+I ALL LNRKSELAVMRA GMSVWQFL P  +VA LIG   +TV+NP AA  R EAE+ F+K FG++ N +++Q  G+WLRQ+GADG SVI A AA  RGL L GV++  YDK GHF ER++     L +GYW  + A V+R+ Q PE++D + VSTYL+P+RV+DALG+  S+SFW+LPG+IE TEKA LSA + ++Q
Sbjct:    7 LTWYIGRRFLTGIMATLVICSLLIFMIDLLELLRLAGKYGSVPAMSLATIALMRLPAYTEFLFGFAVLVGSIGALLFLNRKSELAVMRAGGMSVWQFLWPGILVAFLIGLIGMTVFNPLAAAGRTEAEKRFAKAFGQDGNLLKAQGGGSWLRQDGADGESVIGAAAASNRGLTLTGVMVFSYDKDGHFTERIDAASGSLKEGYWQFDRAWVSRLGQEPEKFDTYLVSTYLTPDRVQDALGTVFSVSFWDLPGLIEVTEKAKLSAEKLKVQ 276          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XKN1_9HYPH8.250e-12567.39LPS export ABC transporter permease LptG n=1 Tax=H... [more]
A0A2W4RMM4_9PROT1.810e-11563.33LPS export ABC transporter permease LptG (Fragment... [more]
A0A2W4L1Z2_9PROT4.930e-11161.48LPS export ABC transporter permease LptG n=1 Tax=P... [more]
A0A433A812_HYPSQ2.420e-10456.93LPS export ABC transporter permease LptG (Fragment... [more]
A0A6I3KES1_9HYPH2.440e-10459.06LPS export ABC transporter permease LptG n=2 Tax=H... [more]
A0A0D6JIB3_9HYPH2.780e-10458.55Permease n=2 Tax=Hyphomicrobiaceae TaxID=45401 Rep... [more]
UPI0009306AEE2.050e-10358.46LPS export ABC transporter permease LptG n=1 Tax=H... [more]
A0A2S5P7L8_HYPSQ4.420e-10259.93LPS export ABC transporter permease LptG n=1 Tax=H... [more]
UPI000361CF834.570e-10260.00LPS export ABC transporter permease LptG n=1 Tax=H... [more]
A0A7Y4XIP8_HYPSQ1.300e-10156.67LPS export ABC transporter permease LptG n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17234contigP-wetherbeei_contig17234:2..829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1267005.KB911263_gene1278
Preferred namelptG
PFAMsYjgP_YjgQ
Model size828
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K11720
KEGG TC1.B.42.1
KEGG Pathwayko02010,map02010
KEGG ModuleM00320
Hectar predicted targeting categorysignal anchor
Exons1
Evalue7.49e-103
EggNOG OGsCOG0795@1|root,COG0795@2|Bacteria,1MVW3@1224|Proteobacteria,2TR76@28211|Alphaproteobacteria,3N79Z@45401|Hyphomicrobiaceae
Descriptionpermease YjgP YjgQ
Cds size828
COG categoryS
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186111.5401285-CDS-P-wetherbeei_contig17234:1..8291683186111.5401285-CDS-P-wetherbeei_contig17234:1..829Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17234 2..829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17234.1.1prot_P-wetherbeei_contig17234.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17234 2..829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17234.1.1

>prot_P-wetherbeei_contig17234.1.1 ID=prot_P-wetherbeei_contig17234.1.1|Name=mRNA_P-wetherbeei_contig17234.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp
MISTRILGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPA
TTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSV
WQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQS
QANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEG
DRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAIS
ISFWELPGIIEATEKAGLSASRFRIQ
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mRNA from alignment at P-wetherbeei_contig17234:2..829-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17234.1.1 ID=mRNA_P-wetherbeei_contig17234.1.1|Name=mRNA_P-wetherbeei_contig17234.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig17234:2..829- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCTCGACCCGCATCCTCGGCTTCTACCTCGCCCGGCGCTATCTGAC CGCGATGCTGGGAACCTTCTTCCTGTGCGCCGTGCTGATCTTCATGATCG ACTTCGTCGAAGTCCTCAGGCAATCGGGCAAGCACGGCAGTGTTCCCGCT ACCACCTTGATCTGGCTCACATTGTTGCGGCTTCCCGCCTACAGCGAGTT GCTGTTGGCCTTCGCCGTCCAGGTCGGCGCCATCGCGGCGCTCCTGATGT TGAACCGCAAGAGCGAATTGGCGGTGATGCGGGCGGCGGGCATGTCGGTC TGGCAGTTCCTGCGGCCGGCGTTCGTCGTTGCCCTGCTGATCGGCGCGTT CGCCATCACGGTGTACAACCCGGCCGCTGCCCGCGCCCGCGCCGAGGCCG AGCGATTGTTCTCGAAGGTGTTCGGGCGGGAATCCAACTTCATGCAGTCG CAAGCCAATGGCGCCTGGCTGCGGCAGGAGGGGGCGGACGGCTCGTCCGT GATCCATGCCCGGGCCGCCTTGCAGCGCGGGCTGGAACTGGTCGGTGTGC TGATCGTGCAATACGACAAGTCCGGCCACTTCGTGGAACGGGTCGAAGGT GATCGGGCCTTCCTCCATGACGGCTACTGGCTCGTCGAGAACGCGGCGGT AGCGCGCATGAGCCAGGCCCCGGAGCGCTACGATCAATTCCAGGTCAGCA CCTATCTCAGCCCCGAGCGCGTGCGCGATGCCCTCGGGAGCGCCATCTCG ATTTCGTTCTGGGAGCTTCCGGGCATCATCGAAGCCACGGAAAAGGCTGG TCTTTCCGCGTCGCGGTTCCGCATTCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17234:2..829-

>mRNA_P-wetherbeei_contig17234.1.1 ID=mRNA_P-wetherbeei_contig17234.1.1|Name=mRNA_P-wetherbeei_contig17234.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig17234:2..829- (Phaeothamnion wetherbeei SAG_119_79)
ATGATCTCGACCCGCATCCTCGGCTTCTACCTCGCCCGGCGCTATCTGAC
CGCGATGCTGGGAACCTTCTTCCTGTGCGCCGTGCTGATCTTCATGATCG
ACTTCGTCGAAGTCCTCAGGCAATCGGGCAAGCACGGCAGTGTTCCCGCT
ACCACCTTGATCTGGCTCACATTGTTGCGGCTTCCCGCCTACAGCGAGTT
GCTGTTGGCCTTCGCCGTCCAGGTCGGCGCCATCGCGGCGCTCCTGATGT
TGAACCGCAAGAGCGAATTGGCGGTGATGCGGGCGGCGGGCATGTCGGTC
TGGCAGTTCCTGCGGCCGGCGTTCGTCGTTGCCCTGCTGATCGGCGCGTT
CGCCATCACGGTGTACAACCCGGCCGCTGCCCGCGCCCGCGCCGAGGCCG
AGCGATTGTTCTCGAAGGTGTTCGGGCGGGAATCCAACTTCATGCAGTCG
CAAGCCAATGGCGCCTGGCTGCGGCAGGAGGGGGCGGACGGCTCGTCCGT
GATCCATGCCCGGGCCGCCTTGCAGCGCGGGCTGGAACTGGTCGGTGTGC
TGATCGTGCAATACGACAAGTCCGGCCACTTCGTGGAACGGGTCGAAGGT
GATCGGGCCTTCCTCCATGACGGCTACTGGCTCGTCGAGAACGCGGCGGT
AGCGCGCATGAGCCAGGCCCCGGAGCGCTACGATCAATTCCAGGTCAGCA
CCTATCTCAGCCCCGAGCGCGTGCGCGATGCCCTCGGGAGCGCCATCTCG
ATTTCGTTCTGGGAGCTTCCGGGCATCATCGAAGCCACGGAAAAGGCTGG
TCTTTCCGCGTCGCGGTTCCGCATTCAA
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