mRNA_P-wetherbeei_contig17234.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A7C4XKN1_9HYPH (LPS export ABC transporter permease LptG n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XKN1_9HYPH) HSP 1 Score: 369 bits (946), Expect = 8.250e-125 Identity = 186/276 (67.39%), Postives = 233/276 (84.42%), Query Frame = 1
Query: 1 MISTRILGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
M IL YL RR+LTA+L TF +C++L+FMIDFVE+LRQSGK+GSVP +TLIWLT LRLPAY+EL+LAFAVQVG+IAALL+LNR+SELAVMR+AGMSVWQFLRPA +++L++G FA+ VYNP AA ARAE+ERLF++VFGRESNF+Q+ +GAWLRQEGADGSSV++A RG++LV V+ + +D+ G F ER++GDRA L DG+W VENA V+R + PERY + VSTYLS ER++DALGS IS+SFWELPG+IEATEKAG+S RF+IQ
Sbjct: 1 MTPASILTRYLLRRFLTAILATFAVCSLLVFMIDFVEMLRQSGKYGSVPFSTLIWLTALRLPAYTELMLAFAVQVGSIAALLVLNRRSELAVMRSAGMSVWQFLRPALLLSLVLGTFAVAVYNPLAAAARAESERLFAEVFGRESNFLQTGGSGAWLRQEGADGSSVVNAAGVTNRGMQLVSVMFLLFDRDGRFQERIDGDRASLRDGFWQVENALVSRPHEQPERYPTYVVSTYLSQERIQDALGSTISVSFWELPGLIEATEKAGISPYRFQIQ 276
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A2W4RMM4_9PROT (LPS export ABC transporter permease LptG (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4RMM4_9PROT) HSP 1 Score: 342 bits (877), Expect = 1.810e-115 Identity = 171/270 (63.33%), Postives = 221/270 (81.85%), Query Frame = 1
Query: 19 LGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
L Y+AR ++ +LGTF +CA+LIFMIDF+EVLRQSGK GSVPA TL+WLTLLRLPAY+E+LLAF+V VG+IA+LL L+R+SELAV+RAAGMSVWQFL P VVA ++G + YNP AA+ARAEAE LF++VFG+ESNF++++A G+WLRQ+GADGSSV++A GL L V + QYD+ G FVER+E RA LH+GYW +E+ VA + + P+RYD++ +STYL+PERVRDALGS IS+SFWELPG+IE E+AGLSA+ ++IQ
Sbjct: 6 LKLYIARHFVIGILGTFLVCALLIFMIDFIEVLRQSGKRGSVPAATLVWLTLLRLPAYTEILLAFSVLVGSIASLLHLSRRSELAVIRAAGMSVWQFLSPGIVVAFILGVLTVAFYNPLAAKARAEAEELFAEVFGKESNFLKTRA-GSWLRQDGADGSSVMNAGGVADGGLRLFTVTVFQYDREGRFVERIEAKRATLHEGYWELEDVQVAGVGREPQRYDRYLISTYLTPERVRDALGSTISLSFWELPGLIEVVERAGLSAAPYKIQ 274
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A2W4L1Z2_9PROT (LPS export ABC transporter permease LptG n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4L1Z2_9PROT) HSP 1 Score: 333 bits (855), Expect = 4.930e-111 Identity = 166/270 (61.48%), Postives = 220/270 (81.48%), Query Frame = 1
Query: 19 LGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
L Y+AR ++ +LGTF +CA+LIFMIDFVEVLRQSGKHGSVPA TL+WLTLLRLPAY+E+LLAFAV VG+IA++L L+R+SELAV+RAAGMSVWQF+ P V+A ++G + YNP AA ARA+AE LF++VFG+ESNF++++A G+WLRQ+GADGSSV++A GL L V I Q+D+ G FVER+E +A L DGYW +++A VA + + PERY+++ VSTYL+PERV+DALGS IS+SFW+LP +I+ E+AGLSA+ +R+Q
Sbjct: 6 LKLYIARHFIIGILGTFAVCALLIFMIDFVEVLRQSGKHGSVPAATLVWLTLLRLPAYTEILLAFAVLVGSIASMLQLSRRSELAVIRAAGMSVWQFISPGIVLAFILGVLTVVFYNPLAASARAQAEELFAEVFGKESNFLKTRA-GSWLRQDGADGSSVLNAGGVADGGLRLFTVTIFQFDREGRFVERIEAKQATLQDGYWELQDALVAGVGRQPERYERYLVSTYLTPERVQDALGSVISLSFWQLPAVIDVVERAGLSAAPYRVQ 274
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A433A812_HYPSQ (LPS export ABC transporter permease LptG (Fragment) n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A433A812_HYPSQ) HSP 1 Score: 315 bits (807), Expect = 2.420e-104 Identity = 152/267 (56.93%), Postives = 208/267 (77.90%), Query Frame = 1
Query: 28 YLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
Y+AR +L A++ T +CA+LIFMIDFVE+LRQS K G+VP TL+++ LRL AY E LL FAV VGA++ALL LNRKSELAVMRA GMSVWQFL P +V L++G +TVYNP AAR RA++E++F+K FG ++N +++Q G+W+RQ+G DG S++ A AA RGL L GV+I+ YD+SGHF ERV+ +A L DGYW +++A V+R+ Q PE++D + VSTYL+P+RV++ALG+ S+SFW+LP +I+A +KAGLS R R+Q
Sbjct: 10 YIARMFLVAIVATLAVCAMLIFMIDFVELLRQSSKFGNVPVPTLVYIACLRLGAYVEFLLGFAVLVGALSALLYLNRKSELAVMRAGGMSVWQFLAPGLIVGLIVGVLGVTVYNPLAARGRAKSEQVFAKAFGNDTNLLRAQGGGSWIRQDGVDGESILGAAAASNRGLTLTGVMIIAYDRSGHFTERVDAGQAELKDGYWELKDAWVSRLGQQPEKFDSYLVSTYLTPDRVQEALGTVFSVSFWDLPDLIDAADKAGLSTERLRVQ 276
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A6I3KES1_9HYPH (LPS export ABC transporter permease LptG n=2 Tax=Hyphomicrobium TaxID=81 RepID=A0A6I3KES1_9HYPH) HSP 1 Score: 317 bits (811), Expect = 2.440e-104 Identity = 163/276 (59.06%), Postives = 203/276 (73.55%), Query Frame = 1
Query: 1 MISTRILGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
M TR LG Y+A R++ A+L TF LC+VLI++IDFVE+LRQSGK G VP TL + +LRLPAY+E L+AFAV VG+I ALL L+RKSEL VMRA GMSVWQFLRP VVA L+G + V+NP AA R AE LF+ FGRE+N ++S++ WLRQ GADG SVI A A +GL L GV +D GHFVERV+G RA LH+GYW V+ A VAR+ + PE++D + VSTYL+P+RV DALG+ S+SFWE+P +IE EKA LS+ R RIQ
Sbjct: 1 MFGTRTLGHYIAARFMMAILTTFLLCSVLIYLIDFVELLRQSGKQGEVPLLTLALIAILRLPAYAEFLIAFAVLVGSITALLQLSRKSELTVMRAGGMSVWQFLRPGIVVAFLVGVLTVAVFNPMAAAGRDAAENLFADAFGRETNLLRSRSGSTWLRQNGADGQSVISAAVATNKGLTLHGVSAFVFDNEGHFVERVDGKRADLHEGYWEVKEAWVARIGREPEKFDIYLVSTYLTPDRVTDALGTVFSVSFWEMPALIEVAEKAKLSSDRLRIQ 276
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A0D6JIB3_9HYPH (Permease n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A0D6JIB3_9HYPH) HSP 1 Score: 317 bits (811), Expect = 2.780e-104 Identity = 161/275 (58.55%), Postives = 210/275 (76.36%), Query Frame = 1
Query: 4 ISTRILGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
I T L +Y+ R +LT +LGTF LC+ LIFMIDFVE+LRQ+GK+GSVPA L W+ LLRLPAY+E LL FA+ G+IAALL L+RKSELAVMRA GMSVWQFL P F+VA+ +G FA T+YNP AA AR +AE +F+ FGR+ N +++++ +WLRQ G DG SVI+A A +GL L GV++ YD G FVER++ RA L +GYW + +A V+ + + P++YD + VSTYL+P+RV+DALG+AIS+SFWELPG+IE EKA LSA+ RIQ
Sbjct: 6 IGTATLNWYVGRWFLTTILGTFLLCSALIFMIDFVELLRQAGKYGSVPAWLLAWMALLRLPAYTEFLLPFAIMTGSIAALLQLSRKSELAVMRAGGMSVWQFLLPGFIVAVTLGVFATTLYNPLAAAAREKAEAIFADAFGRDVNLLRAKSGESWLRQNGIDGQSVINAVRASNQGLTLTGVIVFVYDNDGGFVERIDAARADLKEGYWELRDAWVSGVGREPQKYDFYMVSTYLTPDRVQDALGTAISVSFWELPGLIEVAEKAKLSATTLRIQ 280
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: UPI0009306AEE (LPS export ABC transporter permease LptG n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009306AEE) HSP 1 Score: 314 bits (805), Expect = 2.050e-103 Identity = 159/272 (58.46%), Postives = 204/272 (75.00%), Query Frame = 1
Query: 13 RILGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
R LGFY+ +R+L A+ F LC+VLIF+IDFVE+LRQSGK+G V TL ++ LLRLPAY+E L+AFAV VG+IAALL L+RKSEL VMRA GMSVWQFLRP +V ++G V+NP AA RA AE ++++ FG+E+N ++S++ +WLRQ G DG SVI+A A RGL L GV + +D G FVERV+G RA LH+GYW V+ A V R+ + PE++D + VSTYL+P+RV DALG+ S+SFWELPG+IE EKA LSASR RIQ
Sbjct: 6 RTLGFYIGKRFLLAIFAVFLLCSVLIFLIDFVELLRQSGKYGEVSVVTLAFIALLRLPAYAEFLIAFAVLVGSIAALLQLSRKSELTVMRAGGMSVWQFLRPGIIVGFMVGLLTAMVFNPLAAAGRAAAESVYAEAFGKETNLLRSKSGASWLRQNGTDGQSVINAAIATNRGLTLHGVSVFIFDNEGRFVERVDGKRADLHEGYWEVKEAWVVRIGREPEKFDTYLVSTYLTPDRVSDALGTVFSVSFWELPGLIEVAEKAKLSASRLRIQ 277
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A2S5P7L8_HYPSQ (LPS export ABC transporter permease LptG n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5P7L8_HYPSQ) HSP 1 Score: 311 bits (796), Expect = 4.420e-102 Identity = 160/267 (59.93%), Postives = 202/267 (75.66%), Query Frame = 1
Query: 28 YLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
Y+AR++LT +LGTF LC+VLIFMIDFVE+LRQSGK+G+VPA L WL LLRLPAYSE L+ FA+ G+IAALL+L RKSELAVMRA GMSVWQFL P VA +IG A+ +NP AA R +AERLF+ FGR++N + +Q+ G+WLRQ+G DG SVI A AA RGL+L GV + SG FVER++ A L +GYW + +A V R+ Q PER++ + +STYL+PERV+DALGS S+SF+ELPG+IE EKA LS R R+Q
Sbjct: 9 YIARKFLTGILGTFVLCSVLIFMIDFVELLRQSGKYGAVPAWRLAWLALLRLPAYSEFLIGFAMLSGSIAALLLLARKSELAVMRAGGMSVWQFLSPGLAVAFIIGVGAVVAFNPLAAAGRTKAERLFADAFGRDANVLAAQSGGSWLRQDGVDGQSVIGAVAASNRGLKLTGVAAYVFHPSGTFVERIDAASAELKEGYWQISDAWVVRLGQEPERFETYLLSTYLTPERVQDALGSVFSVSFFELPGLIEVAEKAKLSTDRLRVQ 275
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: UPI000361CF83 (LPS export ABC transporter permease LptG n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000361CF83) HSP 1 Score: 311 bits (796), Expect = 4.570e-102 Identity = 162/270 (60.00%), Postives = 205/270 (75.93%), Query Frame = 1
Query: 19 LGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
L Y+ R+L A+ F LC VLIFMIDFVE+LRQ+GK+GSVPA L W+T LRLPAY+E+LL FAV VG+I+ALLML RKSELAVMRA GMSVWQFLRP VA+++G + TV+NP AA AR +E+L+S+ FGRES+ + A+G WLRQ+G DG SV+ A + +RG EL V YDKSG F ERV+ RA L +GYW++E+A V+R+ + PE + ++ +STYL+PERV DALGS IS+SFWELP +I TEKAGLSAS+ RIQ
Sbjct: 7 LSVYIGMRFLIAIFAVFGLCTVLIFMIDFVELLRQAGKYGSVPAWLLAWITALRLPAYTEILLPFAVLVGSISALLMLARKSELAVMRAGGMSVWQFLRPGAAVAMMLGILSSTVFNPLAATARDSSEKLYSEAFGRESSLLGKGASGTWLRQDGLDGQSVLTAGSTRRRGTELTTVTAFVYDKSGRFSERVDASRAKLEEGYWVLESALVSRVGREPETFGKYLLSTYLTPERVVDALGSVISVSFWELPDLIYVTEKAGLSASKLRIQ 276
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Match: A0A7Y4XIP8_HYPSQ (LPS export ABC transporter permease LptG n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y4XIP8_HYPSQ) HSP 1 Score: 310 bits (793), Expect = 1.300e-101 Identity = 153/270 (56.67%), Postives = 203/270 (75.19%), Query Frame = 1
Query: 19 LGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPATTLIWLTLLRLPAYSELLLAFAVQVGAIAALLMLNRKSELAVMRAAGMSVWQFLRPAFVVALLIGAFAITVYNPAAARARAEAERLFSKVFGRESNFMQSQANGAWLRQEGADGSSVIHARAALQRGLELVGVLIVQYDKSGHFVERVEGDRAFLHDGYWLVENAAVARMSQAPERYDQFQVSTYLSPERVRDALGSAISISFWELPGIIEATEKAGLSASRFRIQ 828
L +Y+ RR+LT ++ T +C++LIFMID +E+LR +GK+GSVPA +L + L+RLPAY+E L FAV VG+I ALL LNRKSELAVMRA GMSVWQFL P +VA LIG +TV+NP AA R EAE+ F+K FG++ N +++Q G+WLRQ+GADG SVI A AA RGL L GV++ YDK GHF ER++ L +GYW + A V+R+ Q PE++D + VSTYL+P+RV+DALG+ S+SFW+LPG+IE TEKA LSA + ++Q
Sbjct: 7 LTWYIGRRFLTGIMATLVICSLLIFMIDLLELLRLAGKYGSVPAMSLATIALMRLPAYTEFLFGFAVLVGSIGALLFLNRKSELAVMRAGGMSVWQFLWPGILVAFLIGLIGMTVFNPLAAAGRTEAEKRFAKAFGQDGNLLKAQGGGSWLRQDGADGESVIGAAAASNRGLTLTGVMVFSYDKDGHFTERIDAASGSLKEGYWQFDRAWVSRLGQEPEKFDTYLVSTYLTPDRVQDALGTVFSVSFWDLPGLIEVTEKAKLSAEKLKVQ 276 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17234.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17234.1.1 >prot_P-wetherbeei_contig17234.1.1 ID=prot_P-wetherbeei_contig17234.1.1|Name=mRNA_P-wetherbeei_contig17234.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp MISTRILGFYLARRYLTAMLGTFFLCAVLIFMIDFVEVLRQSGKHGSVPAback to top mRNA from alignment at P-wetherbeei_contig17234:2..829- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17234.1.1 ID=mRNA_P-wetherbeei_contig17234.1.1|Name=mRNA_P-wetherbeei_contig17234.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig17234:2..829- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17234:2..829- >mRNA_P-wetherbeei_contig17234.1.1 ID=mRNA_P-wetherbeei_contig17234.1.1|Name=mRNA_P-wetherbeei_contig17234.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig17234:2..829- (Phaeothamnion wetherbeei SAG_119_79)back to top |