mRNA_P-wetherbeei_contig17066.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17066.1.1
Unique NamemRNA_P-wetherbeei_contig17066.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17066.1.1 vs. uniprot
Match: A0A8K1FBZ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBZ8_PYTOL)

HSP 1 Score: 114 bits (285), Expect = 2.840e-28
Identity = 57/123 (46.34%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   13 DFIAGSISGCASIIVGQPFDTIKVRIQTRGHLYKNAVHCFRKTVQAEGPGGLFRGMAPPLATATIVNAVAFSTYAETMRHICNDRDSRAIVHAKEFAAGCFAGGVQCALLTPAELVKCKLQVQ 381
            DF +G + GC+ IIVGQPFDT+KVR+QT    YK  + C R+T   EG  G F+GM+ PL  +   NA+ F+TY  T+R I ++  S  +  +  F AG   G  QC  +TP EL+KC+LQVQ
Sbjct:   21 DFASGVVGGCSGIIVGQPFDTVKVRLQTHSTFYKGPIDCVRQTFHHEGARGFFKGMSSPLFGSAWTNAIMFATYERTLRLIDDNAQSPKL--SSVFTAGLVGGFFQCTAVTPTELIKCRLQVQ 141          
BLAST of mRNA_P-wetherbeei_contig17066.1.1 vs. uniprot
Match: A0A2D4BSP1_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSP1_PYTIN)

HSP 1 Score: 115 bits (289), Expect = 2.230e-27
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   13 DFIAGSISGCASIIVGQPFDTIKVRIQTRGHLYKNAVHCFRKTVQAEGPGGLFRGMAPPLATATIVNAVAFSTYAETMRHICNDRDSRAIVHAKEFAAGCFAGGVQCALLTPAELVKCKLQVQ 381
            DF +G + GC+ IIVGQPFDT+KVR+QT    YK A+ C R+T Q EG  G F+GM  PL  +   NA+ F+TY  T+R I  D +S+       F AG F+G  Q A +TP +L+KC+LQVQ
Sbjct:   49 DFASGVVGGCSGIIVGQPFDTVKVRLQTHSTFYKGAIDCARQTYQHEGARGFFKGMMSPLFGSAWTNAIMFATYERTLRLI--DDNSQTPELRSVFIAGTFSGFCQTAAVTPTDLIKCRLQVQ 169          
BLAST of mRNA_P-wetherbeei_contig17066.1.1 vs. uniprot
Match: A0A1V9XA16_9ACAR (Mitochondrial carnitine/acylcarnitine carrier protein CACL-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XA16_9ACAR)

HSP 1 Score: 114 bits (284), Expect = 2.410e-27
Identity = 61/126 (48.41%), Postives = 80/126 (63.49%), Query Frame = 1
Query:   13 DFIAGSISGCASIIVGQPFDTIKVRIQTRGHL---YKNAVHCFRKTVQAEGPGGLFRGMAPPLATATIVNAVAFSTYAETMRHICNDRDSRAIVHAKEFAAGCFAGGVQCALLTPAELVKCKLQVQ 381
            DF+ G ISGCA +IVG PFDT+KVR+QT+      Y+N +HCF   ++AE   GLFRGM  P+A    VNA+ F  Y  T R +  D+DS +      F AG  AGGVQ A+ +P EL+K +LQ+Q
Sbjct:   80 DFVVGWISGCAGVIVGHPFDTVKVRLQTQDAAKPKYRNTIHCFTTILKAESAPGLFRGMTSPMAGIPFVNAILFGVYGTT-RKLFTDQDSLST----HFCAGMVAGGVQSAITSPMELIKTRLQLQ 200          
BLAST of mRNA_P-wetherbeei_contig17066.1.1 vs. uniprot
Match: H3GBF0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBF0_PHYRM)

HSP 1 Score: 109 bits (273), Expect = 1.440e-26
Identity = 57/123 (46.34%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   13 DFIAGSISGCASIIVGQPFDTIKVRIQTRGHLYKNAVHCFRKTVQAEGPGGLFRGMAPPLATATIVNAVAFSTYAETMRHICNDRDSRAIVHAKEFAAGCFAGGVQCALLTPAELVKCKLQVQ 381
            D  AG++ GCA +IVGQPFDT+KVR+Q +   Y  A+ C RKT+Q EG  G F+GM  PL  +   NAV F+ Y  T++ I +  D  ++     F AG   G  Q   L PAEL+KC+LQVQ
Sbjct:   13 DLAAGTVGGCAGVIVGQPFDTVKVRLQIQSKFYNGALDCTRKTLQHEGFQGFFKGMTSPLIGSAATNAVMFAVYERTLKMIDDTPDKPSLTSV--FYAGAIGGFWQTVPLAPAELIKCRLQVQ 133          
BLAST of mRNA_P-wetherbeei_contig17066.1.1 vs. uniprot
Match: UPI0002659680 (mitochondrial basic amino acids transporter n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002659680)

HSP 1 Score: 108 bits (270), Expect = 7.700e-26
Identity = 60/133 (45.11%), Postives = 80/133 (60.15%), Query Frame = 1
Query:   13 DFIAGSISGCASIIVGQPFDTIKVRIQT---RGHLYKNAVHCFRKTVQAEGPGGLFRGMAPPLATATIVNAVAFSTYAETMRHICNDRDSRAIVHAKEFAAGCFAGGVQCALLTPAELVKCKLQVQAAGTFSA 402
            DF+AG I GCA ++VG PFDT+KVR+QT   R  +Y+   HC R  +  +   GLFRGM+ P+   ++VNA+ F  Y  T R   +D+DS        F AG  AG VQ  + +P ELVK +LQVQA  T +A
Sbjct:    2 DFVAGCIGGCAGVLVGHPFDTVKVRLQTQDPRNPVYRGTFHCLRSIIAKDSVSGLFRGMSSPMVGVSVVNAIVFGVYGCTSRQF-SDQDSLKT----HFVAGMVAGSVQSFVTSPLELVKTRLQVQADTTPTA 129          
BLAST of mRNA_P-wetherbeei_contig17066.1.1 vs. uniprot
Match: A0A7S2NDB1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2NDB1_9DINO)

HSP 1 Score: 107 bits (267), Expect = 9.840e-26
Identity = 63/130 (48.46%), Postives = 76/130 (58.46%), Query Frame = 1
Query:    1 RMDADFIAGSISGCASIIVGQPFDTIKVRIQTRGHLYKNAVHCFRKTVQAEGPGGLFRGMAPPLATATIVNAVAFSTYAETMRHICNDRDSRAIVHA---KEFAAGCFAGGVQCALLTPAELVKCKLQVQ 381
            R   + I G + G  S++VG PFDTIKVR Q     Y  AV C R T++ EGP  LF+GM  PL T + + A+ FST+ E  R +  D      VHA   K FAAG  AG VQC L TP ELV+ KLQVQ
Sbjct:    7 RYAVESIGGFLGGSVSVVVGHPFDTIKVRQQAGQEAYAGAVDCVRTTLRTEGPRALFKGMLSPLLTNSAMGALTFSTWQEAQRLLHVDE----AVHAPLGKVFAAGAIAGVVQCVLATPMELVRTKLQVQ 132          
BLAST of mRNA_P-wetherbeei_contig17066.1.1 vs. uniprot
Match: A0A024GRU4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GRU4_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.040e-25
Identity = 51/123 (41.46%), Postives = 76/123 (61.79%), Query Frame = 1
Query:   13 DFIAGSISGCASIIVGQPFDTIKVRIQTRGHLYKNAVHCFRKTVQAEGPGGLFRGMAPPLATATIVNAVAFSTYAETMRHICNDRDSRAIVHAKEFAAGCFAGGVQCALLTPAELVKCKLQVQ 381
            D ++G  +GCA + VGQPFDTIKVR+QT G  YK  + C ++T + EG  G F+G++ PL  +   NA+ FS Y + ++++  D    ++     F AGC  G  Q   +TP +L+KC+LQVQ
Sbjct:   10 DVVSGVTAGCAGVFVGQPFDTIKVRLQTHGTFYKGPIDCAKQTFKHEGIHGFFKGLSSPLIGSACTNAIVFSIYEKALKYLGTDEKHPSLDSV--FIAGCLGGFCQTIAVTPTDLIKCRLQVQ 130          
BLAST of mRNA_P-wetherbeei_contig17066.1.1 vs. uniprot
Match: A0A7M7K9I8_VARDE (Uncharacterized protein n=2 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7K9I8_VARDE)

HSP 1 Score: 107 bits (267), Expect = 2.080e-25
Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 1
Query:   13 DFIAGSISGCASIIVGQPFDTIKVRIQTRGHL---YKNAVHCFRKTVQAEGPGGLFRGMAPPLATATIVNAVAFSTYAETMRHICNDRDSRAIVHAKEFAAGCFAGGVQCALLTPAELVKCKLQVQAAG 390
            DF+AG +SGCA +IVG PFDTIKVR+QT+G +   YK  +HCF   ++ E   GLFRGM+  +A   +VNAV F  Y  T R +  D+D+ +      F +G  AGG Q  + +P EL+K +LQ+Q  G
Sbjct:    2 DFVAGWVSGCAGLIVGHPFDTIKVRLQTQGAVKLKYKGTIHCFTTILKTESVAGLFRGMSSLMAGIPLVNAVLFGVYGNT-RKLFADQDALST----HFYSGMIAGGAQSFITSPMELIKTRLQLQDEG 125          
BLAST of mRNA_P-wetherbeei_contig17066.1.1 vs. uniprot
Match: A0A3R7Y4S0_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7Y4S0_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.000e-25
Identity = 61/128 (47.66%), Postives = 78/128 (60.94%), Query Frame = 1
Query:    1 RMDADFIAGSISGCASIIVGQPFDTIKVRIQTRGHLYKNAVHCFRKTVQAEGPGGLFRGMAPPLATATIVNAVAFSTYAETMRHICNDRDSRAIVHAKE-FAAGCFAGGVQCALLTPAELVKCKLQVQ 381
            R   D+ AG + G   IIVGQPFDTIKVR+QT G  Y +  HC R TVQ EG  GLF+G+A PL  +  +NA+ F  +  T+R +    DS A+      F AG  AG VQ  ++ P +LVKC+LQVQ
Sbjct:   23 RAAIDYAAGCLGGVMGIIVGQPFDTIKVRLQTHGAHYTSPWHCARHTVQHEGVRGLFKGLASPLVGSVPINALVFGVHGSTLRAL----DSAAMPSLSSVFYAGSIAGFVQSFVVAPTDLVKCQLQVQ 146          
BLAST of mRNA_P-wetherbeei_contig17066.1.1 vs. uniprot
Match: W7TZC0_9STRA (Solute carrier family 25 member 45 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZC0_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.460e-25
Identity = 57/122 (46.72%), Postives = 82/122 (67.21%), Query Frame = 1
Query:   16 FIAGSISGCASIIVGQPFDTIKVRIQTRGHLYKNAVHCFRKTVQAEGPGGLFRGMAPPLATATIVNAVAFSTYAETMRHICN-DRDSRAI-VHAKEFAAGCFAGGVQCALLTPAELVKCKLQ 375
            F+AG   G  S+ VGQPFDTIKVR+Q     +K A+ C R+ +  EGP  LF+GM+ P+ +A+ VNA+ F++Y ETM  I   D ++R    + + F AG  AG +QC++LTP+EL+KC+LQ
Sbjct:   26 FVAGCAGGVVSLAVGQPFDTIKVRLQASTK-FKGAIDCLRRLLATEGPLALFKGMSSPVLSASFVNAIVFTSYNETMTLIKKTDPEARKRPTYEQVFLAGSVAGALQCSVLTPSELIKCRLQ 146          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17066.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8K1FBZ8_PYTOL2.840e-2846.34Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BSP1_PYTIN2.230e-2748.78Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A1V9XA16_9ACAR2.410e-2748.41Mitochondrial carnitine/acylcarnitine carrier prot... [more]
H3GBF0_PHYRM1.440e-2646.34Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
UPI00026596807.700e-2645.11mitochondrial basic amino acids transporter n=1 Ta... [more]
A0A7S2NDB1_9DINO9.840e-2648.46Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A024GRU4_9STRA1.040e-2541.46Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7M7K9I8_VARDE2.080e-2545.74Uncharacterized protein n=2 Tax=Varroa destructor ... [more]
A0A3R7Y4S0_9STRA3.000e-2547.66Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]
W7TZC0_9STRA5.460e-2546.72Solute carrier family 25 member 45 n=2 Tax=Monodop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17066contigP-wetherbeei_contig17066:58..465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra72614
PFAMsMito_carr
Model size408
Max annot lvl4776|Peronosporales
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.27e-27
EggNOG OGsKOG0762@1|root,KOG0762@2759|Eukaryota,3QBZH@4776|Peronosporales
DescriptionMitochondrial carrier protein
Cds size405
COG categoryC
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186106.6309361-CDS-P-wetherbeei_contig17066:57..4621683186106.6309361-CDS-P-wetherbeei_contig17066:57..462Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17066 58..462 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186106.6419637-UTR-P-wetherbeei_contig17066:462..4651683186106.6419637-UTR-P-wetherbeei_contig17066:462..465Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17066 463..465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17066.1.1prot_P-wetherbeei_contig17066.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17066 58..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17066.1.1

>prot_P-wetherbeei_contig17066.1.1 ID=prot_P-wetherbeei_contig17066.1.1|Name=mRNA_P-wetherbeei_contig17066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
MDADFIAGSISGCASIIVGQPFDTIKVRIQTRGHLYKNAVHCFRKTVQAE
GPGGLFRGMAPPLATATIVNAVAFSTYAETMRHICNDRDSRAIVHAKEFA
AGCFAGGVQCALLTPAELVKCKLQVQAAGTFSAGS
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mRNA from alignment at P-wetherbeei_contig17066:58..465-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17066.1.1 ID=mRNA_P-wetherbeei_contig17066.1.1|Name=mRNA_P-wetherbeei_contig17066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig17066:58..465- (Phaeothamnion wetherbeei SAG_119_79)
CGCATGGACGCTGACTTCATCGCCGGGAGCATAAGCGGTTGCGCCAGCAT CATTGTTGGCCAGCCGTTCGACACCATCAAGGTCCGCATCCAGACGCGTG GCCACCTCTACAAGAATGCCGTCCACTGCTTTCGCAAGACGGTCCAGGCG GAAGGCCCTGGCGGGCTCTTCAGGGGCATGGCGCCGCCACTCGCCACGGC CACCATCGTGAACGCCGTCGCCTTTTCGACCTACGCCGAGACGATGCGTC ACATCTGCAACGACCGCGACAGCCGCGCCATCGTCCACGCCAAGGAGTTT GCGGCAGGCTGCTTCGCCGGCGGCGTTCAGTGCGCCCTGCTGACGCCCGC CGAGCTCGTCAAATGCAAGCTCCAGGTCCAGGCCGCGGGCACCTTTTCCG CCGGTTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17066:58..465-

>mRNA_P-wetherbeei_contig17066.1.1 ID=mRNA_P-wetherbeei_contig17066.1.1|Name=mRNA_P-wetherbeei_contig17066.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig17066:58..465- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGCTGACTTCATCGCCGGGAGCATAAGCGGTTGCGCCAGCATCAT
TGTTGGCCAGCCGTTCGACACCATCAAGGTCCGCATCCAGACGCGTGGCC
ACCTCTACAAGAATGCCGTCCACTGCTTTCGCAAGACGGTCCAGGCGGAA
GGCCCTGGCGGGCTCTTCAGGGGCATGGCGCCGCCACTCGCCACGGCCAC
CATCGTGAACGCCGTCGCCTTTTCGACCTACGCCGAGACGATGCGTCACA
TCTGCAACGACCGCGACAGCCGCGCCATCGTCCACGCCAAGGAGTTTGCG
GCAGGCTGCTTCGCCGGCGGCGTTCAGTGCGCCCTGCTGACGCCCGCCGA
GCTCGTCAAATGCAAGCTCCAGGTCCAGGCCGCGGGCACCTTTTCCGCCG
GTTCC
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