mRNA_P-wetherbeei_contig1690.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1690.1.1
Unique NamemRNA_P-wetherbeei_contig1690.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1690.1.1 vs. uniprot
Match: A0A835ZAA6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA6_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.940e-51
Identity = 78/125 (62.40%), Postives = 99/125 (79.20%), Query Frame = 1
Query:    1 ADSFGEAMPRLNSLVLVGRCGNDPVPRYLNDGKVVLNLSLAVKREYHSLERTARGIRYGEEETDWFPLEIWNREAEYAAKVITKGARIGIRGSFVCDQWTDSEGNERRTPKVLVNSIDLLESRAE 375
            +  F E++P+LN+++L GR G DPV RY +DGK V+ LSLAVKREYH+LER A GIRYGEEETDWF LE+W+REAEYA KV  KG R+GI GS V D W D EG ER T KV+V+++++LE++AE
Sbjct:   77 SSGFAESIPKLNAVLLTGRLGQDPVARYFDDGKCVVQLSLAVKREYHALERKAMGIRYGEEETDWFQLELWSREAEYAMKVAAKGLRVGIEGSLVIDCWEDQEGEERATAKVIVSNMEVLETKAE 201          
BLAST of mRNA_P-wetherbeei_contig1690.1.1 vs. uniprot
Match: B8C9K7_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9K7_THAPS)

HSP 1 Score: 164 bits (414), Expect = 1.110e-49
Identity = 79/128 (61.72%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    1 ADSFGEAMPRLNSLVLVGRCGNDPVPRYLNDGKVVLNLSLAVKREYHSLERTARGIRYGEEETDWFPLEIWNREAEYAAKVITKGARIGIRGSFVCDQWTDS-EGNERRTPKVLVNSIDLLESRAERE 381
            A  F E +P+LN + LVGR G  P P+Y +DGKVVLNLS+AVKR+YH LER  R IR GEEETDWFPLE W R+AEY    + KGARIGI GS V D W D   G +RR PK++V  ID+LESRAE E
Sbjct:    3 ATPFDEHLPKLNVVTLVGRVGGTPDPKYFDDGKVVLNLSVAVKRKYHPLERKVRNIRSGEEETDWFPLEFWGRDAEYVTNYVEKGARIGITGSLVMDGWVDKMTGEQRRRPKIVVRHIDILESRAEAE 130          
BLAST of mRNA_P-wetherbeei_contig1690.1.1 vs. uniprot
Match: K0SQT6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQT6_THAOC)

HSP 1 Score: 164 bits (416), Expect = 1.120e-48
Identity = 79/127 (62.20%), Postives = 94/127 (74.02%), Query Frame = 1
Query:   10 FGEAMPRLNSLVLVGRCGNDPVPRYLNDGKVVLNLSLAVKREYHSLERTARGIRYGEEETDWFPLEIWNREAEYAAKVITKGARIGIRGSFVCDQWTDS-EGNERRTPKVLVNSIDLLESRAERETR 387
            F E +P+LNS+ LVGR GN+P P+Y +DGKVVLNLSLA KR+YH LER  R I+ GEEETDWF LEIW R+AEY A  + KGAR+GI GS V D W D   G +RR PK+ V  +D+LESRAE E R
Sbjct:   73 FDEHLPKLNSVTLVGRVGNEPEPKYFDDGKVVLNLSLACKRKYHPLERKVREIKSGEEETDWFALEIWGRDAEYVANYVDKGARMGITGSLVQDSWIDKVSGMKRRKPKIAVRQVDVLESRAEAELR 199          
BLAST of mRNA_P-wetherbeei_contig1690.1.1 vs. uniprot
Match: D8LMF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF5_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.120e-48
Identity = 77/131 (58.78%), Postives = 95/131 (72.52%), Query Frame = 1
Query:    1 ADSFGEAMPRLNSLVLVGRCGNDPVPRYLNDGKVVLNLSLAVKREYHSLERTARGIRYGEEETDWFPLEIWNREAEYAAKVITKGARIGIRGSFVCDQWTDSEGNERRTPKVLVNSIDLLESRAERETRGD 393
            +D F E +PRLN + L G  G DP P+Y + G+VVLNLSLAVKREYH LER A GI  GEEETDWF LE+WNR+AEYAAKV  KG R+G+ G      W D EGN+R T K+LV ++++L+SRAE+  R D
Sbjct:   39 SDGFDEGVPRLNMVFLTGYLGQDPKPKYFDSGRVVLNLSLAVKREYHPLERKALGIVQGEEETDWFQLEMWNRDAEYAAKVCKKGGRVGVTGGLSLQSWIDREGNDRTTVKILVQNLEVLDSRAEQAMRSD 169          
BLAST of mRNA_P-wetherbeei_contig1690.1.1 vs. uniprot
Match: A0A7R9W4H7_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W4H7_9STRA)

HSP 1 Score: 164 bits (416), Expect = 2.560e-48
Identity = 78/127 (61.42%), Postives = 95/127 (74.80%), Query Frame = 1
Query:   10 FGEAMPRLNSLVLVGRCGNDPVPRYLNDGKVVLNLSLAVKREYHSLERTARGIRYGEEETDWFPLEIWNREAEYAAKVITKGARIGIRGSFVCDQWTDSEGNERRTP-KVLVNSIDLLESRAERETR 387
            F + +PRLN + L GR GNDP PRY +DGKVVLNLSLAV+R+YH LER  R I+YGEEETDWFPLE+W R+AE+A+  + KGARIGI GS + D W D    E RT  K+LV  +D+LE+RAE E R
Sbjct:  100 FEDHIPRLNIVTLSGRVGNDPEPRYFDDGKVVLNLSLAVQRKYHPLERKVRNIKYGEEETDWFPLELWGRDAEFASNFVDKGARIGITGSLMMDSWEDRNTGEPRTKHKILVKHLDILETRAEAEAR 226          
BLAST of mRNA_P-wetherbeei_contig1690.1.1 vs. uniprot
Match: A0A7S2SIA7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SIA7_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.870e-47
Identity = 76/130 (58.46%), Postives = 98/130 (75.38%), Query Frame = 1
Query:    1 ADSFGEAMPRLNSLVLVGRCGNDPVPRYLNDGKVVLNLSLAVKREYHSLERTARGIRYGEEETDWFPLEIWNREAEYAAKVITKGARIGIRGSFVCDQWTD-SEGNERRTPKVLVNSIDLLESRAERETR 387
            A  F E +PR+NS+ LVGR G DP P+YL+DGKVVLNLSLAVKR+YH LER  R I+ GEEETDWFPLEIW R+AEYA+K + KG+R+ + G+   D WTD + G  R+  K++V  +D+LE++AE E R
Sbjct:  100 ASEFEEHIPRVNSVTLVGRVGQDPDPKYLDDGKVVLNLSLAVKRKYHPLERNVRNIKSGEEETDWFPLEIWGRDAEYASKYVDKGSRMMVTGTLQIDTWTDRNTGEPRKKAKIIVRHLDILETKAEAELR 229          
BLAST of mRNA_P-wetherbeei_contig1690.1.1 vs. uniprot
Match: A0A7S1DC37_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DC37_CYCTE)

HSP 1 Score: 160 bits (406), Expect = 7.000e-47
Identity = 77/130 (59.23%), Postives = 97/130 (74.62%), Query Frame = 1
Query:    1 ADSFGEAMPRLNSLVLVGRCGNDPVPRYLNDGKVVLNLSLAVKREYHSLERTARGIRYGEEETDWFPLEIWNREAEYAAKVITKGARIGIRGSFVCDQWTD-SEGNERRTPKVLVNSIDLLESRAERETR 387
            A  +   +P  N++ +VGR GNDP P+YL+ GKVVLNLSLAVKR+YH LER A+ I+ GEEETDW+ LEIW + AEYAAK +TKGARIG+ GS   DQW D + GN R  PK++V  +D+LE+RAE E R
Sbjct:   85 AGEWPSDIPTFNNVFMVGRVGNDPEPKYLDSGKVVLNLSLAVKRKYHRLERIAKEIKSGEEETDWYRLEIWGQTAEYAAKYVTKGARIGLSGSLRIDQWEDRTSGNMRARPKIVVQELDILETRAEAELR 214          
BLAST of mRNA_P-wetherbeei_contig1690.1.1 vs. uniprot
Match: A0A7S1YYF7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YYF7_TRICV)

HSP 1 Score: 157 bits (398), Expect = 9.820e-46
Identity = 74/130 (56.92%), Postives = 93/130 (71.54%), Query Frame = 1
Query:    1 ADSFGEAMPRLNSLVLVGRCGNDPVPRYLNDGKVVLNLSLAVKREYHSLERTARGIRYGEEETDWFPLEIWNREAEYAAKVITKGARIGIRGSFVCDQWTDSEGNERRTP-KVLVNSIDLLESRAERETR 387
            +  F + +PRLN + L GR GNDP PRY +DGKVVLNLSLA KR+YH LER  R I+YGEEETDW+PLE+W R+AE+ +K + KGARIGI GS   D W D    E R+  K+ V  +DLLE++AE + R
Sbjct:  100 SSEFEDHIPRLNIVTLSGRVGNDPEPRYFDDGKVVLNLSLACKRKYHPLERKVRNIKYGEEETDWWPLEMWGRDAEFVSKYVNKGARIGITGSLTMDSWVDKNTGEPRSKYKIQVKHLDLLETKAEADLR 229          
BLAST of mRNA_P-wetherbeei_contig1690.1.1 vs. uniprot
Match: A0A7S1ZHN3_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZHN3_9STRA)

HSP 1 Score: 156 bits (395), Expect = 7.010e-45
Identity = 72/127 (56.69%), Postives = 94/127 (74.02%), Query Frame = 1
Query:   10 FGEAMPRLNSLVLVGRCGNDPVPRYLNDGKVVLNLSLAVKREYHSLERTARGIRYGEEETDWFPLEIWNREAEYAAKVITKGARIGIRGSFVCDQWTDSE-GNERRTPKVLVNSIDLLESRAERETR 387
            F   +P+LN + L GR GN P PRY +DGKVVLN+ LAVKR+YH LER  + I+YG+EETDWF LE+W R+AE+AA+ + KG+RIGI GS   D WTD + G  RR PK++V  +D+LE++AE E R
Sbjct:  109 FEPHIPKLNVVTLSGRVGNVPEPRYFDDGKVVLNMGLAVKRKYHPLERKVKNIQYGQEETDWFNLELWGRDAEFAARFVDKGSRIGITGSLAIDSWTDKQTGQYRRKPKIVVRHLDVLETKAEAELR 235          
BLAST of mRNA_P-wetherbeei_contig1690.1.1 vs. uniprot
Match: A0A7S2USN2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2USN2_9STRA)

HSP 1 Score: 150 bits (379), Expect = 2.470e-43
Identity = 72/128 (56.25%), Postives = 94/128 (73.44%), Query Frame = 1
Query:   10 FGEAMPRLNSLVLVGRCGNDPV-PRYLNDGKVVLNLSLAVKREYHSLERTARGIRYGEEETDWFPLEIWNREAEYAAKVITKGARIGIRGSFVCDQWTD-SEGNERRTPKVLVNSIDLLESRAERETR 387
            F + +P+ N + L GR GN  + P+Y +DGKVVL+LSLAVKR+YH LER A  I+ G+EETDWF LEIW R+AEYAAK + KG+RIG+ GS V D WTD + G  R  PK+LV  +D+LE++AE + R
Sbjct:   36 FADHIPKFNVVTLSGRVGNPQLEPKYFDDGKVVLSLSLAVKRKYHPLERRAYNIKSGDEETDWFALEIWGRDAEYAAKYVEKGSRIGVTGSLVVDNWTDRATGEPRSRPKILVKQLDILETKAEADLR 163          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1690.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAA6_9STRA1.940e-5162.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B8C9K7_THAPS1.110e-4961.72Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K0SQT6_THAOC1.120e-4862.20Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
D8LMF5_ECTSI2.120e-4858.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9W4H7_9STRA2.560e-4861.42Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2SIA7_9STRA1.870e-4758.46Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1DC37_CYCTE7.000e-4759.23Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S1YYF7_TRICV9.820e-4656.92Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1ZHN3_9STRA7.010e-4556.69Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2USN2_9STRA2.470e-4356.25Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1690contigP-wetherbeei_contig1690:629..1353 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0SQT6
PFAMsSSB
Model size408
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.2e-48
EggNOG OGsCOG0629@1|root,2S5G6@2759|Eukaryota,2XD6Y@2836|Bacillariophyta
Ec32 ortholog descriptionPrimosome PriB/single-strand DNA-binding
Ec32 orthologEc-05_002550.1
DescriptionSingle-strand binding protein family
Cds size387
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.3816657-CDS-P-wetherbeei_contig1690:628..6931683186101.3816657-CDS-P-wetherbeei_contig1690:628..693Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1690 629..693 -
1683186101.3944318-CDS-P-wetherbeei_contig1690:868..10611683186101.3944318-CDS-P-wetherbeei_contig1690:868..1061Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1690 869..1061 -
1683186101.4041574-CDS-P-wetherbeei_contig1690:1203..13321683186101.4041574-CDS-P-wetherbeei_contig1690:1203..1332Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1690 1204..1332 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.4173994-UTR-P-wetherbeei_contig1690:1332..13531683186101.4173994-UTR-P-wetherbeei_contig1690:1332..1353Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1690 1333..1353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1690.1.1prot_P-wetherbeei_contig1690.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1690 629..1332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1690.1.1

>prot_P-wetherbeei_contig1690.1.1 ID=prot_P-wetherbeei_contig1690.1.1|Name=mRNA_P-wetherbeei_contig1690.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MPRLNSLVLVGRCGNDPVPRYLNDGKVVLNLSLAVKREYHSLERTARGIR
YGEEETDWFPLEIWNREAEYAAKVITKGARIGIRGSFVCDQWTDSEGNER
RTPKVLVNSIDLLESRAERETRGDDGGDG
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mRNA from alignment at P-wetherbeei_contig1690:629..1353-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1690.1.1 ID=mRNA_P-wetherbeei_contig1690.1.1|Name=mRNA_P-wetherbeei_contig1690.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=725bp|location=Sequence derived from alignment at P-wetherbeei_contig1690:629..1353- (Phaeothamnion wetherbeei SAG_119_79)
GCTGACTCGTTTGGTGAGGCAATGCCGAGGCTCAACAGCTTGGTTCTGGT CGGGCGCTGCGGCAATGACCCTGTGCCGAGGTATCTAAATGATGGCAAAG TTGTTCTCAACCTCAGCCTTGCCGTCAAGCGCGAGTATCATTCTCTAGAG GTGAGAAGCAGGAAAATGACAATCCACTGGTATTTTGGCGCAGTGACTGA ACAAAGTGCCGTTTCATAAATCAAAGGGATGCTTTACAATCGCTTGAATT TCAATTCGTATTGCTCTTCTCTCTTCTGACGCCCTGTCGCAGCGGACAGC GCGGGGTATCCGGTACGGGGAAGAGGAAACGGATTGGTTTCCTCTGGAGA TTTGGAACCGGGAAGCAGAGTATGCCGCCAAGGTTATCACCAAGGGAGCT CGCATCGGGATTCGCGGCTCCTTCGTGTGCGACCAGTGGACCGATTCGGA AGGCAACGAGCGAAGGACGCCAAAAGTGTTGGTAAGTCAATTTAGTTGAC TGTGGTTAGATCTCGGTCTTGCTCTGTCAATTGACATCCTCTTAAGACCT CTATGCAATCAAATATCGTCGTAGCAGTAACCTTGGGAACACCTGATCGA GTTTCTTACCTGAACAAAGCATCCGTCCTCATTAATGCAATTGCTTCAAA CGACAGGTAGATAGCATCGACCTGCTCGAGTCGCGGGCCGAGCGCGAGAC CCGCGGCGACGACGGCGGCGACGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1690:629..1353-

>mRNA_P-wetherbeei_contig1690.1.1 ID=mRNA_P-wetherbeei_contig1690.1.1|Name=mRNA_P-wetherbeei_contig1690.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig1690:629..1353- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAGGCTCAACAGCTTGGTTCTGGTCGGGCGCTGCGGCAATGACCC
TGTGCCGAGGTATCTAAATGATGGCAAAGTTGTTCTCAACCTCAGCCTTG
CCGTCAAGCGCGAGTATCATTCTCTAGAGCGGACAGCGCGGGGTATCCGG
TACGGGGAAGAGGAAACGGATTGGTTTCCTCTGGAGATTTGGAACCGGGA
AGCAGAGTATGCCGCCAAGGTTATCACCAAGGGAGCTCGCATCGGGATTC
GCGGCTCCTTCGTGTGCGACCAGTGGACCGATTCGGAAGGCAACGAGCGA
AGGACGCCAAAAGTGTTGGTAAATAGCATCGACCTGCTCGAGTCGCGGGC
CGAGCGCGAGACCCGCGGCGACGACGGCGGCGACGGC
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