mRNA_P-wetherbeei_contig169.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: D7FS94_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI) HSP 1 Score: 86.7 bits (213), Expect = 1.370e-17 Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 1
Query: 22 VRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGGDADNIVTR--CAAFDGSKWRGGRLRVHLAKGDFRARLTAEW 312
VRLHVGGL V +++AAL ++ + S G + E+MRDA TGI RGFG+V + GG+ AA+DG++W+GG++RV AKGD+ RL AEW
Sbjct: 11 VRLHVGGLARGVDPNELAALIARTLPS--GTASPTAEIMRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYDGARWKGGKIRVGFAKGDYLQRLKAEW 107
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A1Y1HXN5_KLENI (Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXN5_KLENI) HSP 1 Score: 67.0 bits (162), Expect = 1.220e-10 Identity = 42/104 (40.38%), Postives = 55/104 (52.88%), Query Frame = 1
Query: 1 GKMTVGVVRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAKGDFRARLTAEW 312
G VG +RL VGGLP DV ++ A F G V S V + G RGFG+V++ ++ A ++G+KWRGGRLRV A+ F RL AEW
Sbjct: 24 GATAVGRIRLFVGGLPADVTPEELQARFQPF-----GKVVGSEIVPQKEDAGTCRGFGYVDLEPVSEASLSKCFAVYNGTKWRGGRLRVEKARASFLDRLKAEW 122
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A6H5KVR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR0_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 2.000e-10 Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 136 MRDAITGIARGFGFVEVAGGDADNIVTR--CAAFDGSKWRGGRLRVHLAKGDFRARLTAEWREAEEK 330
MRDA TGI RGFG+V + GG+ AA++G++W+GG++RV AKGD+ RL AEW A +K
Sbjct: 1 MRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYNGARWKGGKIRVGFAKGDYLQRLKAEWDAAAKK 67
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A3N5Y7F9_9BACT (RNA-binding protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5Y7F9_9BACT) HSP 1 Score: 56.2 bits (134), Expect = 6.670e-8 Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
Query: 25 RLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVA 189
RL+VG LP+ + + D+ ALFS+A G V +V+VMRD+ITG ARGFGFVE+A
Sbjct: 4 RLYVGNLPYKMTDEDLRALFSQA------GAVDNVQVMRDSITGRARGFGFVEMA 52
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: H3H1F6_PHYRM (RRM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1F6_PHYRM) HSP 1 Score: 58.9 bits (141), Expect = 8.060e-8 Identity = 36/109 (33.03%), Postives = 59/109 (54.13%), Query Frame = 1
Query: 22 VRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITG-------IARGFGFVEVAGGDADNIVTRCA-AFDGSKWRGGRLRVHLAKGDFRARLTAEWREAE 324
VR++VGGLP D + ++ F + + SA + VE+ + G +RGF ++ + G DA+ + F+ +KWRGG L+V +A+ FR +L EW EA+
Sbjct: 4 VRVYVGGLPADAKTQELRERFGRFVSSAADCELQDVELPKPKPVGDVPPPPGASRGFAYLTLRGADAETQSDKLQKTFNRTKWRGGLLKVQVARPHFRVKLEQEWAEAQ 112
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A8J4BQ41_9CHLO (RRM domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BQ41_9CHLO) HSP 1 Score: 58.9 bits (141), Expect = 8.270e-8 Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 1
Query: 19 VVRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMR---DAITGIA------------RGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAKGDFRARLTAEWRE 318
VVRL +GGLPHD+ +D+ + FS G V ++E++ T +A RGF +VE+ D ++ + ++ SKWRG LRV LAK + ARL EW+E
Sbjct: 2 VVRLFLGGLPHDISAADLRSRFSPF------GKVEAIEIIPPKDQTTTAVAQTSFQTLSGEKCRGFAYVELDPKDEASVHKCLSVYNNSKWRGNVLRVELAKPIYLARLHVEWQE 110
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A8J4GGV9_9CHLO (RRM domain-containing protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GGV9_9CHLO) HSP 1 Score: 57.8 bits (138), Expect = 2.100e-7 Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 1
Query: 19 VVRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMR---DAITGIA-------------RGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAKGDFRARLTAEWRE 318
VVRL +GGLPHD+ +D+ + F+ G V S++++ + IT A RGF ++E+ D +I + ++ SKWRG LRV LAK + ARL EW+E
Sbjct: 2 VVRLFLGGLPHDISAADLRSRFNPF------GKVESIDIIPPKDNQITTAAVPTSTQTSNGPTCRGFAYIELDPKDEVSIHKCLSVYNNSKWRGNVLRVELAKPSYLARLHVEWQE 111
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A2M8D9Y6_9BACT (RNA-binding protein n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A2M8D9Y6_9BACT) HSP 1 Score: 52.4 bits (124), Expect = 1.270e-6 Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 28 LHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAK 279
L+VG LP++ E ++ LF AE G V SV ++ D +TG++RGFGFV++ +A AA +G+ ++G LRV+++K
Sbjct: 5 LYVGNLPYNASEDELRNLF------AEHGPVESVRIITDRVTGLSRGFGFVDMETDEAAEAAI--AALNGADFKGRALRVNVSK 80
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A0T5PFZ8_9ALTE (RNA-binding protein n=4 Tax=Alishewanella TaxID=111142 RepID=A0A0T5PFZ8_9ALTE) HSP 1 Score: 53.5 bits (127), Expect = 1.870e-6 Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1
Query: 28 LHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGGDADNIVTRCAAFD 234
L+VG LP+ E V ALFS+ G V +V +M+D TG RGFGFVEVA DA+ ++T+ F+
Sbjct: 80 LYVGNLPYRANEDAVKALFSRY------GTVVNVRLMKDRQTGRRRGFGFVEVAAADANQMITKLNDFE 142
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A7Y4SI48_9BACT (RNA-binding protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4SI48_9BACT) HSP 1 Score: 50.8 bits (120), Expect = 2.840e-6 Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1
Query: 25 RLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGG-DADNIVTR 219
+L VG LP++ E D+ +LF +A G V +V VMRD +TG ARGF FVE+A DA +T+
Sbjct: 4 KLFVGNLPYETAEQDLESLFGQA------GQVETVSVMRDRVTGRARGFAFVEMASDEDAQKAITQ 63 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig169.2.1 >prot_P-wetherbeei_contig169.2.1 ID=prot_P-wetherbeei_contig169.2.1|Name=mRNA_P-wetherbeei_contig169.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp MTVGVVRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGback to top mRNA from alignment at P-wetherbeei_contig169:11256..11585+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig169.2.1 ID=mRNA_P-wetherbeei_contig169.2.1|Name=mRNA_P-wetherbeei_contig169.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig169:11256..11585+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig169:11256..11585+ >mRNA_P-wetherbeei_contig169.2.1 ID=mRNA_P-wetherbeei_contig169.2.1|Name=mRNA_P-wetherbeei_contig169.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig169:11256..11585+ (Phaeothamnion wetherbeei SAG_119_79)back to top |