mRNA_P-wetherbeei_contig169.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig169.2.1
Unique NamemRNA_P-wetherbeei_contig169.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: D7FS94_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS94_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.370e-17
Identity = 47/99 (47.47%), Postives = 65/99 (65.66%), Query Frame = 1
Query:   22 VRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGGDADNIVTR--CAAFDGSKWRGGRLRVHLAKGDFRARLTAEW 312
            VRLHVGGL   V  +++AAL ++ + S  G    + E+MRDA TGI RGFG+V + GG+          AA+DG++W+GG++RV  AKGD+  RL AEW
Sbjct:   11 VRLHVGGLARGVDPNELAALIARTLPS--GTASPTAEIMRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYDGARWKGGKIRVGFAKGDYLQRLKAEW 107          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A1Y1HXN5_KLENI (Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HXN5_KLENI)

HSP 1 Score: 67.0 bits (162), Expect = 1.220e-10
Identity = 42/104 (40.38%), Postives = 55/104 (52.88%), Query Frame = 1
Query:    1 GKMTVGVVRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAKGDFRARLTAEW 312
            G   VG +RL VGGLP DV   ++ A F        G  V S  V +    G  RGFG+V++      ++    A ++G+KWRGGRLRV  A+  F  RL AEW
Sbjct:   24 GATAVGRIRLFVGGLPADVTPEELQARFQPF-----GKVVGSEIVPQKEDAGTCRGFGYVDLEPVSEASLSKCFAVYNGTKWRGGRLRVEKARASFLDRLKAEW 122          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A6H5KVR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.000e-10
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  136 MRDAITGIARGFGFVEVAGGDADNIVTR--CAAFDGSKWRGGRLRVHLAKGDFRARLTAEWREAEEK 330
            MRDA TGI RGFG+V + GG+          AA++G++W+GG++RV  AKGD+  RL AEW  A +K
Sbjct:    1 MRDASTGIERGFGYVSIPGGEGVKAGAERAIAAYNGARWKGGKIRVGFAKGDYLQRLKAEWDAAAKK 67          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A3N5Y7F9_9BACT (RNA-binding protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5Y7F9_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 6.670e-8
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   25 RLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVA 189
            RL+VG LP+ + + D+ ALFS+A      G V +V+VMRD+ITG ARGFGFVE+A
Sbjct:    4 RLYVGNLPYKMTDEDLRALFSQA------GAVDNVQVMRDSITGRARGFGFVEMA 52          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: H3H1F6_PHYRM (RRM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1F6_PHYRM)

HSP 1 Score: 58.9 bits (141), Expect = 8.060e-8
Identity = 36/109 (33.03%), Postives = 59/109 (54.13%), Query Frame = 1
Query:   22 VRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITG-------IARGFGFVEVAGGDADNIVTRCA-AFDGSKWRGGRLRVHLAKGDFRARLTAEWREAE 324
            VR++VGGLP D +  ++   F + + SA    +  VE+ +    G        +RGF ++ + G DA+    +    F+ +KWRGG L+V +A+  FR +L  EW EA+
Sbjct:    4 VRVYVGGLPADAKTQELRERFGRFVSSAADCELQDVELPKPKPVGDVPPPPGASRGFAYLTLRGADAETQSDKLQKTFNRTKWRGGLLKVQVARPHFRVKLEQEWAEAQ 112          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A8J4BQ41_9CHLO (RRM domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BQ41_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 8.270e-8
Identity = 41/115 (35.65%), Postives = 60/115 (52.17%), Query Frame = 1
Query:   19 VVRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMR---DAITGIA------------RGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAKGDFRARLTAEWRE 318
            VVRL +GGLPHD+  +D+ + FS        G V ++E++       T +A            RGF +VE+   D  ++    + ++ SKWRG  LRV LAK  + ARL  EW+E
Sbjct:    2 VVRLFLGGLPHDISAADLRSRFSPF------GKVEAIEIIPPKDQTTTAVAQTSFQTLSGEKCRGFAYVELDPKDEASVHKCLSVYNNSKWRGNVLRVELAKPIYLARLHVEWQE 110          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A8J4GGV9_9CHLO (RRM domain-containing protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GGV9_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 2.100e-7
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 1
Query:   19 VVRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMR---DAITGIA-------------RGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAKGDFRARLTAEWRE 318
            VVRL +GGLPHD+  +D+ + F+        G V S++++    + IT  A             RGF ++E+   D  +I    + ++ SKWRG  LRV LAK  + ARL  EW+E
Sbjct:    2 VVRLFLGGLPHDISAADLRSRFNPF------GKVESIDIIPPKDNQITTAAVPTSTQTSNGPTCRGFAYIELDPKDEVSIHKCLSVYNNSKWRGNVLRVELAKPSYLARLHVEWQE 111          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A2M8D9Y6_9BACT (RNA-binding protein n=2 Tax=unclassified Acidobacteria TaxID=305072 RepID=A0A2M8D9Y6_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 1.270e-6
Identity = 32/84 (38.10%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   28 LHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAK 279
            L+VG LP++  E ++  LF      AE G V SV ++ D +TG++RGFGFV++   +A       AA +G+ ++G  LRV+++K
Sbjct:    5 LYVGNLPYNASEDELRNLF------AEHGPVESVRIITDRVTGLSRGFGFVDMETDEAAEAAI--AALNGADFKGRALRVNVSK 80          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A0T5PFZ8_9ALTE (RNA-binding protein n=4 Tax=Alishewanella TaxID=111142 RepID=A0A0T5PFZ8_9ALTE)

HSP 1 Score: 53.5 bits (127), Expect = 1.870e-6
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   28 LHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGGDADNIVTRCAAFD 234
            L+VG LP+   E  V ALFS+       G V +V +M+D  TG  RGFGFVEVA  DA+ ++T+   F+
Sbjct:   80 LYVGNLPYRANEDAVKALFSRY------GTVVNVRLMKDRQTGRRRGFGFVEVAAADANQMITKLNDFE 142          
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Match: A0A7Y4SI48_9BACT (RNA-binding protein (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4SI48_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 2.840e-6
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   25 RLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITGIARGFGFVEVAGG-DADNIVTR 219
            +L VG LP++  E D+ +LF +A      G V +V VMRD +TG ARGF FVE+A   DA   +T+
Sbjct:    4 KLFVGNLPYETAEQDLESLFGQA------GQVETVSVMRDRVTGRARGFAFVEMASDEDAQKAITQ 63          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig169.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FS94_ECTSI1.370e-1747.47RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1Y1HXN5_KLENI1.220e-1040.38Protein with RRM/RBD/RNP motifs n=1 Tax=Klebsormid... [more]
A0A6H5KVR0_9PHAE2.000e-1049.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A3N5Y7F9_9BACT6.670e-856.36RNA-binding protein n=1 Tax=Acidobacteria bacteriu... [more]
H3H1F6_PHYRM8.060e-833.03RRM domain-containing protein n=1 Tax=Phytophthora... [more]
A0A8J4BQ41_9CHLO8.270e-835.65RRM domain-containing protein n=1 Tax=Volvox afric... [more]
A0A8J4GGV9_9CHLO2.100e-735.34RRM domain-containing protein n=3 Tax=Volvox retic... [more]
A0A2M8D9Y6_9BACT1.270e-638.10RNA-binding protein n=2 Tax=unclassified Acidobact... [more]
A0A0T5PFZ8_9ALTE1.870e-644.93RNA-binding protein n=4 Tax=Alishewanella TaxID=11... [more]
A0A7Y4SI48_9BACT2.840e-645.45RNA-binding protein (Fragment) n=1 Tax=Acidobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig169contigP-wetherbeei_contig169:11256..11585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3711.Bra002670.1-P
PFAMsRRM_1
Model size330
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.53e-09
EggNOG OGs2C9NB@1|root,2QPQA@2759|Eukaryota,37MXF@33090|Viridiplantae,3GDNY@35493|Streptophyta,3HNZB@3699|Brassicales
DescriptionRNA recognition motif
Cds size324
COG categoryA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.3486738-UTR-P-wetherbeei_contig169:11255..112611683186101.3486738-UTR-P-wetherbeei_contig169:11255..11261Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig169 11256..11261 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186101.3570473-CDS-P-wetherbeei_contig169:11261..115851683186101.3570473-CDS-P-wetherbeei_contig169:11261..11585Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig169 11262..11585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig169.2.1prot_P-wetherbeei_contig169.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig169 11262..11585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig169.2.1

>prot_P-wetherbeei_contig169.2.1 ID=prot_P-wetherbeei_contig169.2.1|Name=mRNA_P-wetherbeei_contig169.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
MTVGVVRLHVGGLPHDVRESDVAALFSKAIGSAEGGYVASVEVMRDAITG
IARGFGFVEVAGGDADNIVTRCAAFDGSKWRGGRLRVHLAKGDFRARLTA
EWREAEEK
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mRNA from alignment at P-wetherbeei_contig169:11256..11585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig169.2.1 ID=mRNA_P-wetherbeei_contig169.2.1|Name=mRNA_P-wetherbeei_contig169.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig169:11256..11585+ (Phaeothamnion wetherbeei SAG_119_79)
GGAAAGATGACAGTGGGCGTCGTACGACTGCACGTGGGCGGCTTGCCGCA CGATGTGCGTGAGAGCGACGTGGCCGCGCTCTTCTCAAAGGCCATAGGAA GCGCCGAGGGAGGCTATGTTGCTTCTGTTGAGGTGATGCGAGATGCCATT ACGGGCATAGCACGCGGATTCGGCTTTGTCGAAGTAGCCGGCGGAGATGC GGACAACATCGTGACGCGTTGCGCCGCCTTTGACGGCAGCAAGTGGCGCG GAGGGAGACTTCGAGTCCATCTCGCGAAGGGCGACTTTCGTGCGCGGCTG ACGGCGGAATGGCGCGAGGCCGAGGAGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig169:11256..11585+

>mRNA_P-wetherbeei_contig169.2.1 ID=mRNA_P-wetherbeei_contig169.2.1|Name=mRNA_P-wetherbeei_contig169.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig169:11256..11585+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGTGGGCGTCGTACGACTGCACGTGGGCGGCTTGCCGCACGATGT
GCGTGAGAGCGACGTGGCCGCGCTCTTCTCAAAGGCCATAGGAAGCGCCG
AGGGAGGCTATGTTGCTTCTGTTGAGGTGATGCGAGATGCCATTACGGGC
ATAGCACGCGGATTCGGCTTTGTCGAAGTAGCCGGCGGAGATGCGGACAA
CATCGTGACGCGTTGCGCCGCCTTTGACGGCAGCAAGTGGCGCGGAGGGA
GACTTCGAGTCCATCTCGCGAAGGGCGACTTTCGTGCGCGGCTGACGGCG
GAATGGCGCGAGGCCGAGGAGAAG
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