mRNA_P-wetherbeei_contig16879.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A4S8I546_MUSBA (Uncharacterized protein ycf68 n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8I546_MUSBA) HSP 1 Score: 116 bits (291), Expect = 6.940e-32 Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 1
Query: 1 MAVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRR 228
MAVVSSCR+TAG KPEEGGDDVKSS PLC G HTCYN KG+ +RE E P++ QFGLQAATRLHEAGIASNRR
Sbjct: 1 MAVVSSCRKTAGDKPEEGGDDVKSSCPLCPGRHTCYNGRDKGSRSREGELTPKTRPQFGLQAATRLHEAGIASNRR 76
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A4S8JCC7_MUSBA (Uncharacterized protein ycf68 n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8JCC7_MUSBA) HSP 1 Score: 115 bits (288), Expect = 8.750e-32 Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 1
Query: 1 MAVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSA 234
MAVVSSCR+TAG KPEEGGDDVKSS PLC G HTCYN KG+ +RE E P++ QFGLQAAT LHEA IASNRRSA
Sbjct: 1 MAVVSSCRKTAGDKPEEGGDDVKSSCPLCPGRHTCYNGQNKGSRSREGELTPKTCPQFGLQAATHLHEAEIASNRRSA 78
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A484KKN1_9ASTE (Uncharacterized protein ycf68 n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KKN1_9ASTE) HSP 1 Score: 110 bits (275), Expect = 4.830e-30 Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 1
Query: 1 MAVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAM 237
M VVSSCR+TAG KP+EG DDVKSS PLC G HTCYN KG +RE E P++ QFGLQAATRLHE GIA+NRRSA+
Sbjct: 4 MDVVSSCRKTAGDKPDEGKDDVKSSCPLCPGRHTCYNGRDKGPRSREEELTPKTRPQFGLQAATRLHEVGIANNRRSAI 82
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A8J5F5J2_ZINOF (Uncharacterized protein ycf68 n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F5J2_ZINOF) HSP 1 Score: 112 bits (280), Expect = 6.560e-29 Identity = 57/81 (70.37%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 1 MAVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAMLR 243
M VVSSCR+TAG KPEEG DDVKSS PLC G H CYN KG+ +RE E P++ QFGLQA TRLHEAGIASNRRSA+ R
Sbjct: 1 MVVVSSCRKTAGDKPEEGEDDVKSSCPLCPGRHMCYNGRDKGSRSREGELTPKTRPQFGLQAVTRLHEAGIASNRRSAIRR 81
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A0D2ZV59_BRAOL (Uncharacterized protein ycf68 n=10 Tax=Magnoliopsida TaxID=3398 RepID=A0A0D2ZV59_BRAOL) HSP 1 Score: 107 bits (267), Expect = 1.230e-28 Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 4 AVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAMLR 243
A +SS R TAG KPEEG DDVKSS PLC G HTCYN KG+ +RE E P++ QFGLQAATRLHEAGIASNRRSA+ R
Sbjct: 20 AWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGSRSREGELTPKTRPQFGLQAATRLHEAGIASNRRSAIRR 99
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A0J8ASV6_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8ASV6_BETVV) HSP 1 Score: 105 bits (262), Expect = 3.140e-28 Identity = 51/66 (77.27%), Postives = 54/66 (81.82%), Query Frame = 1
Query: 25 ETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASN 222
ETA K EEGGDDVKSSWPLC GLHTCYN YK NRE+E I E+ +QFGLQAATRLHEAGIASN
Sbjct: 1 ETASDKLEEGGDDVKSSWPLCPGLHTCYNGRYKPLRNREMELIGENRSQFGLQAATRLHEAGIASN 66
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: M1CTX2_SOLTU (Uncharacterized protein ycf68 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1CTX2_SOLTU) HSP 1 Score: 107 bits (267), Expect = 4.200e-28 Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query: 4 AVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAMLR 243
A +SS R TAG KPEEG DDVKSS PLC G HTCYN KG+ +RE E P++ QFGLQAATRLHEAGIASNRRSA+ R
Sbjct: 63 AWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGSRSREGELTPKTRPQFGLQAATRLHEAGIASNRRSAIRR 142
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A1I7T9A8_9PELO (Uncharacterized protein n=1 Tax=Caenorhabditis tropicalis TaxID=1561998 RepID=A0A1I7T9A8_9PELO) HSP 1 Score: 105 bits (262), Expect = 4.630e-28 Identity = 52/73 (71.23%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 25 ETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAMLR 243
+TA V EEGGDDVKSS PLCLGLH CYN YKG REVE IP+S +QFGL +ATR HE G+ASNRRSA LR
Sbjct: 12 DTAVVNTEEGGDDVKSSCPLCLGLHACYNGRYKGLRYREVERIPKSRSQFGLGSATRPHEVGVASNRRSATLR 84
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: D5ZTV8_STRV1 (Uncharacterized protein (Fragment) n=1 Tax=Streptomyces viridosporus (strain ATCC 14672 / DSM 40746 / JCM 4963 / KCTC 9882 / NRRL B-12104 / FH 1290) TaxID=566461 RepID=D5ZTV8_STRV1) HSP 1 Score: 107 bits (266), Expect = 4.760e-28 Identity = 53/74 (71.62%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 22 RETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAMLR 243
RETAGV EEGGDDVKSS PLCLGLHTCYN Y REVE I +S +QFGL +ATR HE G+ASNRRSA+LR
Sbjct: 15 RETAGVNSEEGGDDVKSSCPLCLGLHTCYNGRYNELRYREVERISKSRSQFGLGSATRPHEVGVASNRRSALLR 88
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A1B2YTS0_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1B2YTS0_9BACT) HSP 1 Score: 105 bits (261), Expect = 6.390e-28 Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 1
Query: 22 RETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAMLR 243
+ETA EEGGDDVKSSWPL GLHTCYN AY+G+ + V+PI +SA+QFGL++ATR HEAGIASNR SAM R
Sbjct: 10 KETACASREEGGDDVKSSWPLRPGLHTCYNGAYRGSRHGNVKPISKSASQFGLRSATRPHEAGIASNRASAMAR 83 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig16879.3.1 >prot_P-wetherbeei_contig16879.3.1 ID=prot_P-wetherbeei_contig16879.3.1|Name=mRNA_P-wetherbeei_contig16879.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp MAVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPback to top mRNA from alignment at P-wetherbeei_contig16879:219..538- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig16879.3.1 ID=mRNA_P-wetherbeei_contig16879.3.1|Name=mRNA_P-wetherbeei_contig16879.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=320bp|location=Sequence derived from alignment at P-wetherbeei_contig16879:219..538- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig16879:219..538- >mRNA_P-wetherbeei_contig16879.3.1 ID=mRNA_P-wetherbeei_contig16879.3.1|Name=mRNA_P-wetherbeei_contig16879.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig16879:219..538- (Phaeothamnion wetherbeei SAG_119_79)back to top |