mRNA_P-wetherbeei_contig16879.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16879.3.1
Unique NamemRNA_P-wetherbeei_contig16879.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A4S8I546_MUSBA (Uncharacterized protein ycf68 n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8I546_MUSBA)

HSP 1 Score: 116 bits (291), Expect = 6.940e-32
Identity = 58/76 (76.32%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 MAVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRR 228
            MAVVSSCR+TAG KPEEGGDDVKSS PLC G HTCYN   KG+ +RE E  P++  QFGLQAATRLHEAGIASNRR
Sbjct:    1 MAVVSSCRKTAGDKPEEGGDDVKSSCPLCPGRHTCYNGRDKGSRSREGELTPKTRPQFGLQAATRLHEAGIASNRR 76          
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A4S8JCC7_MUSBA (Uncharacterized protein ycf68 n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8JCC7_MUSBA)

HSP 1 Score: 115 bits (288), Expect = 8.750e-32
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 MAVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSA 234
            MAVVSSCR+TAG KPEEGGDDVKSS PLC G HTCYN   KG+ +RE E  P++  QFGLQAAT LHEA IASNRRSA
Sbjct:    1 MAVVSSCRKTAGDKPEEGGDDVKSSCPLCPGRHTCYNGQNKGSRSREGELTPKTCPQFGLQAATHLHEAEIASNRRSA 78          
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A484KKN1_9ASTE (Uncharacterized protein ycf68 n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484KKN1_9ASTE)

HSP 1 Score: 110 bits (275), Expect = 4.830e-30
Identity = 55/79 (69.62%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    1 MAVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAM 237
            M VVSSCR+TAG KP+EG DDVKSS PLC G HTCYN   KG  +RE E  P++  QFGLQAATRLHE GIA+NRRSA+
Sbjct:    4 MDVVSSCRKTAGDKPDEGKDDVKSSCPLCPGRHTCYNGRDKGPRSREEELTPKTRPQFGLQAATRLHEVGIANNRRSAI 82          
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A8J5F5J2_ZINOF (Uncharacterized protein ycf68 n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F5J2_ZINOF)

HSP 1 Score: 112 bits (280), Expect = 6.560e-29
Identity = 57/81 (70.37%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 MAVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAMLR 243
            M VVSSCR+TAG KPEEG DDVKSS PLC G H CYN   KG+ +RE E  P++  QFGLQA TRLHEAGIASNRRSA+ R
Sbjct:    1 MVVVSSCRKTAGDKPEEGEDDVKSSCPLCPGRHMCYNGRDKGSRSREGELTPKTRPQFGLQAVTRLHEAGIASNRRSAIRR 81          
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A0D2ZV59_BRAOL (Uncharacterized protein ycf68 n=10 Tax=Magnoliopsida TaxID=3398 RepID=A0A0D2ZV59_BRAOL)

HSP 1 Score: 107 bits (267), Expect = 1.230e-28
Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    4 AVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAMLR 243
            A +SS R TAG KPEEG DDVKSS PLC G HTCYN   KG+ +RE E  P++  QFGLQAATRLHEAGIASNRRSA+ R
Sbjct:   20 AWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGSRSREGELTPKTRPQFGLQAATRLHEAGIASNRRSAIRR 99          
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A0J8ASV6_BETVV (Uncharacterized protein (Fragment) n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8ASV6_BETVV)

HSP 1 Score: 105 bits (262), Expect = 3.140e-28
Identity = 51/66 (77.27%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   25 ETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASN 222
            ETA  K EEGGDDVKSSWPLC GLHTCYN  YK   NRE+E I E+ +QFGLQAATRLHEAGIASN
Sbjct:    1 ETASDKLEEGGDDVKSSWPLCPGLHTCYNGRYKPLRNREMELIGENRSQFGLQAATRLHEAGIASN 66          
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: M1CTX2_SOLTU (Uncharacterized protein ycf68 n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1CTX2_SOLTU)

HSP 1 Score: 107 bits (267), Expect = 4.200e-28
Identity = 56/80 (70.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query:    4 AVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAMLR 243
            A +SS R TAG KPEEG DDVKSS PLC G HTCYN   KG+ +RE E  P++  QFGLQAATRLHEAGIASNRRSA+ R
Sbjct:   63 AWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGSRSREGELTPKTRPQFGLQAATRLHEAGIASNRRSAIRR 142          
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A1I7T9A8_9PELO (Uncharacterized protein n=1 Tax=Caenorhabditis tropicalis TaxID=1561998 RepID=A0A1I7T9A8_9PELO)

HSP 1 Score: 105 bits (262), Expect = 4.630e-28
Identity = 52/73 (71.23%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   25 ETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAMLR 243
            +TA V  EEGGDDVKSS PLCLGLH CYN  YKG   REVE IP+S +QFGL +ATR HE G+ASNRRSA LR
Sbjct:   12 DTAVVNTEEGGDDVKSSCPLCLGLHACYNGRYKGLRYREVERIPKSRSQFGLGSATRPHEVGVASNRRSATLR 84          
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: D5ZTV8_STRV1 (Uncharacterized protein (Fragment) n=1 Tax=Streptomyces viridosporus (strain ATCC 14672 / DSM 40746 / JCM 4963 / KCTC 9882 / NRRL B-12104 / FH 1290) TaxID=566461 RepID=D5ZTV8_STRV1)

HSP 1 Score: 107 bits (266), Expect = 4.760e-28
Identity = 53/74 (71.62%), Postives = 58/74 (78.38%), Query Frame = 1
Query:   22 RETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAMLR 243
            RETAGV  EEGGDDVKSS PLCLGLHTCYN  Y     REVE I +S +QFGL +ATR HE G+ASNRRSA+LR
Sbjct:   15 RETAGVNSEEGGDDVKSSCPLCLGLHTCYNGRYNELRYREVERISKSRSQFGLGSATRPHEVGVASNRRSALLR 88          
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Match: A0A1B2YTS0_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1B2YTS0_9BACT)

HSP 1 Score: 105 bits (261), Expect = 6.390e-28
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 1
Query:   22 RETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEPIPESAAQFGLQAATRLHEAGIASNRRSAMLR 243
            +ETA    EEGGDDVKSSWPL  GLHTCYN AY+G+ +  V+PI +SA+QFGL++ATR HEAGIASNR SAM R
Sbjct:   10 KETACASREEGGDDVKSSWPLRPGLHTCYNGAYRGSRHGNVKPISKSASQFGLRSATRPHEAGIASNRASAMAR 83          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16879.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4S8I546_MUSBA6.940e-3276.32Uncharacterized protein ycf68 n=1 Tax=Musa balbisi... [more]
A0A4S8JCC7_MUSBA8.750e-3274.36Uncharacterized protein ycf68 n=1 Tax=Musa balbisi... [more]
A0A484KKN1_9ASTE4.830e-3069.62Uncharacterized protein ycf68 n=1 Tax=Cuscuta camp... [more]
A0A8J5F5J2_ZINOF6.560e-2970.37Uncharacterized protein ycf68 n=1 Tax=Zingiber off... [more]
A0A0D2ZV59_BRAOL1.230e-2870.00Uncharacterized protein ycf68 n=10 Tax=Magnoliopsi... [more]
A0A0J8ASV6_BETVV3.140e-2877.27Uncharacterized protein (Fragment) n=1 Tax=Beta vu... [more]
M1CTX2_SOLTU4.200e-2870.00Uncharacterized protein ycf68 n=1 Tax=Solanum tube... [more]
A0A1I7T9A8_9PELO4.630e-2871.23Uncharacterized protein n=1 Tax=Caenorhabditis tro... [more]
D5ZTV8_STRV14.760e-2871.62Uncharacterized protein (Fragment) n=1 Tax=Strepto... [more]
A0A1B2YTS0_9BACT6.390e-2868.92Uncharacterized protein n=1 Tax=uncultured bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16879contigP-wetherbeei_contig16879:219..538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4081.Solyc01g007710.2.1
Model size246
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.22e-34
EggNOG OGs2D2V5@1|root,2SP5D@2759|Eukaryota,38032@33090|Viridiplantae,3GPYG@35493|Streptophyta,44U72@71274|asterids
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186100.7354095-CDS-P-wetherbeei_contig16879:218..4371683186100.7354095-CDS-P-wetherbeei_contig16879:218..437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16879 219..437 -
1683186100.7486444-CDS-P-wetherbeei_contig16879:511..5381683186100.7486444-CDS-P-wetherbeei_contig16879:511..538Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16879 512..538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16879.3.1prot_P-wetherbeei_contig16879.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16879 219..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16879.3.1

>prot_P-wetherbeei_contig16879.3.1 ID=prot_P-wetherbeei_contig16879.3.1|Name=mRNA_P-wetherbeei_contig16879.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=82bp
MAVVSSCRETAGVKPEEGGDDVKSSWPLCLGLHTCYNAAYKGTPNREVEP
IPESAAQFGLQAATRLHEAGIASNRRSAMLR*
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mRNA from alignment at P-wetherbeei_contig16879:219..538-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16879.3.1 ID=mRNA_P-wetherbeei_contig16879.3.1|Name=mRNA_P-wetherbeei_contig16879.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=320bp|location=Sequence derived from alignment at P-wetherbeei_contig16879:219..538- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGTCGTCAGCTCGTGCCGTGAGGTGTCGGGTTAAGTCCTTCAACG AGCGAAACCCTTGTCTCCAGTTGCCAGCATTCAGTTGGGGACTCTGGAGA GACCGCCGGCGTCAAGCCGGAGGAAGGCGGGGACGACGTCAAGTCATCAT GGCCTTTATGCCTAGGGCTGCACACGTGCTACAATGCCGCGTACAAAGGG ACGCCAAACCGCGAGGTGGAGCCAATCCCAGAAAGCGCGGCTCAGTTCGG ATTGCAGGCTGCAACTCGCCTGCATGAAGCTGGAATCGCTAGTAATCGCA GATCAGCTATGCTGCGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16879:219..538-

>mRNA_P-wetherbeei_contig16879.3.1 ID=mRNA_P-wetherbeei_contig16879.3.1|Name=mRNA_P-wetherbeei_contig16879.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=246bp|location=Sequence derived from alignment at P-wetherbeei_contig16879:219..538- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGTCGTCAGCTCGTGCCGTGAGACCGCCGGCGTCAAGCCGGAGGA
AGGCGGGGACGACGTCAAGTCATCATGGCCTTTATGCCTAGGGCTGCACA
CGTGCTACAATGCCGCGTACAAAGGGACGCCAAACCGCGAGGTGGAGCCA
ATCCCAGAAAGCGCGGCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCA
TGAAGCTGGAATCGCTAGTAATCGCAGATCAGCTATGCTGCGGTGA
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