mRNA_P-wetherbeei_contig1662.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1662.6.1
Unique NamemRNA_P-wetherbeei_contig1662.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1662.6.1 vs. uniprot
Match: A0A2V6WMI5_9BACT (Arabinose ABC transporter permease n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6WMI5_9BACT)

HSP 1 Score: 144 bits (363), Expect = 2.540e-38
Identity = 82/179 (45.81%), Postives = 123/179 (68.72%), Query Frame = 1
Query:    1 RWGVLALMFLVGLAAAMQVQSVQALAPLLVARVGLSYAEIGTLTGLFMLPGVFLAMPGGMLAARLGDRRAMAIALSLMLVSSLLFAATESYAVMVVARLVGGSGAAVLTTQGLKVVTDWFAGREISTAMAINAASFGLGIGMATGLLSGIAAVSSWQAAMLASAALIGAALAIVLAVYR 537
            RW  LALMF+   +   Q QS+ +LAPL+VA +GLSYA++GTL GL++LPGV LA+PGG++  R+GDRRA+  +L+LM+V  LL A ++S+A     RLV G G+ ++    +K+  DWFAGRE++TAMA+   ++ +G+G+AT  L  +A  +SW+ AM+ +A      L I+  V+R
Sbjct:    4 RWVALALMFVTRTSMGFQFQSIGSLAPLVVADLGLSYAQLGTLIGLYLLPGVVLALPGGLIGQRVGDRRAVVASLALMVVGGLLTAWSDSFAGAAAGRLVSGGGSVLMNILLIKITADWFAGREMATAMAVILTAWPVGLGLATATLGSVAMATSWRTAMVVAAVSAALGLIIMAVVFR 182          
BLAST of mRNA_P-wetherbeei_contig1662.6.1 vs. uniprot
Match: A0A3N5IER3_9BACT (MFS transporter (Fragment) n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A3N5IER3_9BACT)

HSP 1 Score: 136 bits (342), Expect = 8.110e-37
Identity = 79/175 (45.14%), Postives = 115/175 (65.71%), Query Frame = 1
Query:    1 RWGVLALMFLVGLAAAMQVQSVQALAPLLVARVGLSYAEIGTLTGLFMLPGVFLAMPGGMLAARLGDRRAMAIALSLMLVSSLLFAATESYAVMVVARLVGGSGAAVLTTQGLKVVTDWFAGREISTAMAINAASFGLGIGMATGLLSGIAAVSSWQAAMLASAALIGAALAIVL 525
            RW VLAL+FL   +   Q QSV ++APL++A +GLSYA++GTL GL+MLPG   A+PGG++  R G+RR +   L+LM+    L A    +   V  RL+ G GA V+     K+V+DWF G+E+STAMAI   S+ +G+G+A   L G+ A +SW+ A++A+AA  G  L ++L
Sbjct:    4 RWIVLALVFLTRTSMGFQFQSVASVAPLMIADLGLSYAQLGTLLGLYMLPGAVFALPGGVIGQRFGERRIVVAGLALMIAGGALTAGAGGFGTAVTGRLLSGVGAVVMNILLAKIVSDWFTGKELSTAMAIMLTSWPVGLGLAATTLGGVGAGTSWRTAVMATAAAAGLGLLLML 178          
BLAST of mRNA_P-wetherbeei_contig1662.6.1 vs. uniprot
Match: A0A2V6YDB6_9BACT (Arabinose ABC transporter permease n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6YDB6_9BACT)

HSP 1 Score: 137 bits (344), Expect = 1.680e-35
Identity = 81/175 (46.29%), Postives = 119/175 (68.00%), Query Frame = 1
Query:    1 RWGVLALMFLVGLAAAMQVQSVQALAPLLVARVGLSYAEIGTLTGLFMLPGVFLAMPGGMLAARLGDRRAMAIALSLMLVSSLLFAATESYAVMVVARLVGGSGAAVLTTQGLKVVTDWFAGREISTAMAINAASFGLGIGMATGLLSGIAAVSSWQAAMLASAALIGAALAIVL 525
            RW  L ++F+  L+   Q QSV ++ PLLV  +GL++ ++G+L GL+MLPG F A+PGGML  R+G+RR +  +L+LM+V  L+ AA+  +AV    RLV G GA ++     K+V DWFAGRE+STAMA+   S+ +G+G+A   L G+A  SSW+ A+ A+A  + AAL +VL
Sbjct:    4 RWVALTIVFVTRLSMGYQFQSVASVGPLLVPELGLTWTQLGSLIGLYMLPGAFFALPGGMLGQRVGERRTVVGSLALMVVGGLVTAASHGFAVAAAGRLVSGVGAVLMNILLAKMVADWFAGREMSTAMAVMLTSWPVGLGLAAATLGGLATASSWRMAIAATA--LAAALGLVL 176          
BLAST of mRNA_P-wetherbeei_contig1662.6.1 vs. uniprot
Match: UPI002013832F (MFS transporter n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0222 TaxID=2807668 RepID=UPI002013832F)

HSP 1 Score: 130 bits (327), Expect = 1.650e-34
Identity = 81/179 (45.25%), Postives = 114/179 (63.69%), Query Frame = 1
Query:    1 RWGVLALMFLVGLAAAMQVQSVQALAPLLVARVGLSYAEIGTLTGLFMLPGVFLAMPGGMLAARLGDRRAMAIALSLMLVSSLLFAATESYAVMVVARLVGGSGAAVLTTQGLKVVTDWFAGREISTAMAINAASFGLGIGMATGLLSGIAAVSSWQAAMLASAALIGAALAIVLAVYR 537
            RWG+LA++F+V L  A Q QSV A+APLL  + G+S A+IG L GL+  PGV +A+PGG +  R GD+R +  AL+LML+ +L  A ++S+ V +  RL+ G+G  +L  Q  K+V DWFAGREI+TAMAI   S+  GI ++   L  I       A   + AALIG  + ++ A YR
Sbjct:    4 RWGILAILFVVRLTMAFQFQSVAAVAPLLGTKFGVSLADIGLLIGLYFTPGVAIALPGGAIGQRFGDKRTVFAALALMLIGNLAMALSDSWTVQMAGRLIAGAGGVLLNVQMTKMVADWFAGREIATAMAIFINSWPAGIALSLLTLPAIGTAWGVSAVYFSVAALIGLGIILLAAGYR 182          
BLAST of mRNA_P-wetherbeei_contig1662.6.1 vs. uniprot
Match: A0A2V7HKX2_9BACT (Arabinose ABC transporter permease n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7HKX2_9BACT)

HSP 1 Score: 133 bits (335), Expect = 4.040e-34
Identity = 75/179 (41.90%), Postives = 123/179 (68.72%), Query Frame = 1
Query:    1 RWGVLALMFLVGLAAAMQVQSVQALAPLLVARVGLSYAEIGTLTGLFMLPGVFLAMPGGMLAARLGDRRAMAIALSLMLVSSLLFAATESYAVMVVARLVGGSGAAVLTTQGLKVVTDWFAGREISTAMAINAASFGLGIGMATGLLSGIAAVSSWQAAMLASAALIGAALAIVLAVYR 537
            RW  L L+F+   +  +Q QS+ ++ PL+V  +GLSYA++GTL GL++LPGV LA+PGG+L  RLG RRA+  +L++M+V  L+ A ++ +A   V R++ GSGA ++    +KV  DWFAGRE++TAMA+   ++ +G+G+A   L G+A  +SW+ +++ +AA     L ++ +V+R
Sbjct:   17 RWLALTLIFVTRTSMGVQFQSIASVGPLIVTDLGLSYAQVGTLLGLYLLPGVALALPGGLLGQRLGGRRALVGSLAVMVVGGLVTAWSDGFAGAAVGRVLSGSGAVLMNILLVKVTADWFAGREMATAMAVMLTAWPVGLGLAAASLGGLATATSWRTSLVVAAAPAALGLVLMASVFR 195          
BLAST of mRNA_P-wetherbeei_contig1662.6.1 vs. uniprot
Match: UPI0015526C07 (MFS transporter n=1 Tax=Alterinioella nitratireducens TaxID=2735915 RepID=UPI0015526C07)

HSP 1 Score: 132 bits (333), Expect = 6.460e-34
Identity = 82/179 (45.81%), Postives = 112/179 (62.57%), Query Frame = 1
Query:    1 RWGVLALMFLVGLAAAMQVQSVQALAPLLVARVGLSYAEIGTLTGLFMLPGVFLAMPGGMLAARLGDRRAMAIALSLMLVSSLLFAATESYAVMVVARLVGGSGAAVLTTQGLKVVTDWFAGREISTAMAINAASFGLGIGMATGLLSGIAAVSSWQAAMLASAALIGAALAIVLAVYR 537
            RW +LA++F+   A A Q Q V AL+PL V   G+  A+IG L GL+  PGV +A+PGG LAAR GD+R + +A +LML    L    +S+A  + AR++ G G   L   G KVV DWFAGREI TAMAI   S+ +GI +A  +L G+AA+     A+  +AAL    L ++LAV+R
Sbjct:    7 RWRMLAILFIARTAMAFQFQMVGALSPLFVTTYGVGLADIGLLVGLYFAPGVVIALPGGSLAARFGDKRLLVLASALMLAGGALALLVDSFAGQIAARVIAGVGGVTLNVIGTKVVADWFAGREIGTAMAIYINSWPVGIALALAVLPGVAALGGLDVALGINAALAALGLGLLLAVFR 185          
BLAST of mRNA_P-wetherbeei_contig1662.6.1 vs. uniprot
Match: A0A2V6QUG2_9BACT (MFS domain-containing protein n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6QUG2_9BACT)

HSP 1 Score: 132 bits (333), Expect = 9.450e-34
Identity = 78/179 (43.58%), Postives = 116/179 (64.80%), Query Frame = 1
Query:    1 RWGVLALMFLVGLAAAMQVQSVQALAPLLVARVGLSYAEIGTLTGLFMLPGVFLAMPGGMLAARLGDRRAMAIALSLMLVSSLLFAATESYAVMVVARLVGGSGAAVLTTQGLKVVTDWFAGREISTAMAINAASFGLGIGMATGLLSGIAAVSSWQAAMLASAALIGAALAIVLAVYR 537
            RW  LA++F+   +   Q QSV ++ PLLV  +GL++A++G+L GL+MLPG FLA+PGGML  RLG+RR +  +L+LM+V  L+ AA+ S+AV    RL+ G GA ++     K+V DWF  RE+STAMA+   S+ +G+G+A   L  +A  SSW+ A+  +A      L ++   YR
Sbjct:   23 RWVALAIVFVTRTSMGYQFQSVASVGPLLVPELGLTWAQLGSLIGLYMLPGAFLALPGGMLGQRLGERRTVVASLALMVVGGLVTAASHSFAVAAAGRLLSGVGAVLMNILLAKMVADWFTEREMSTAMAVMLTSWPVGLGLAAATLGSLATRSSWRMAIAMTALAAAVGLVLIAFAYR 201          
BLAST of mRNA_P-wetherbeei_contig1662.6.1 vs. uniprot
Match: A0A2V7AD43_9BACT (MFS domain-containing protein n=3 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7AD43_9BACT)

HSP 1 Score: 131 bits (330), Expect = 2.830e-33
Identity = 75/179 (41.90%), Postives = 117/179 (65.36%), Query Frame = 1
Query:    1 RWGVLALMFLVGLAAAMQVQSVQALAPLLVARVGLSYAEIGTLTGLFMLPGVFLAMPGGMLAARLGDRRAMAIALSLMLVSSLLFAATESYAVMVVARLVGGSGAAVLTTQGLKVVTDWFAGREISTAMAINAASFGLGIGMATGLLSGIAAVSSWQAAMLASAALIGAALAIVLAVYR 537
            RW  LA++F+       Q Q++ ++ PL+V  +GLS+A++G+L GL+MLPG FLA+PGGML  RLG+RR +  +L+LM+V  ++ AA   YA  +  R++ G GA ++     K+V DWF G  +STAMAI   S+ +G+G+A   + G+A  +SW+ A+L +AA+    L ++  VYR
Sbjct:   25 RWVALAIVFVTRTTMGYQFQAIASVGPLIVTDLGLSWAQLGSLIGLYMLPGAFLALPGGMLGQRLGERRTVVASLALMIVGGIITAAAHGYAAALAGRVLAGVGAVLMNVLLAKMVADWFVGGGMSTAMAIMLTSWPVGLGLAAATIGGLATRTSWRTAILITAAVSTLGLLLIAFVYR 203          
BLAST of mRNA_P-wetherbeei_contig1662.6.1 vs. uniprot
Match: A0A1Q7Y5A5_9BACT (MFS domain-containing protein n=4 Tax=unclassified Candidatus Rokubacteria TaxID=2760815 RepID=A0A1Q7Y5A5_9BACT)

HSP 1 Score: 131 bits (329), Expect = 2.830e-33
Identity = 78/175 (44.57%), Postives = 118/175 (67.43%), Query Frame = 1
Query:    1 RWGVLALMFLVGLAAAMQVQSVQALAPLLVARVGLSYAEIGTLTGLFMLPGVFLAMPGGMLAARLGDRRAMAIALSLMLVSSLLFAATESYAVMVVARLVGGSGAAVLTTQGLKVVTDWFAGREISTAMAINAASFGLGIGMATGLLSGIAAVSSWQAAMLASAALIGAALAIVL 525
            RW  LA++F+   +   Q QSV ++ PLLV  +GL++A++GTL G++MLPG F A+PGGML  RLG+RR +  +L+LM+   L+ AA+  +A+ V  RL+ G GA ++     K+V DWFA  E++TAMAI  +S+ +G+G+A   L G+A  SSW+ A+  +A  + AAL +VL
Sbjct:    3 RWVALAIVFVTRTSMGYQFQSVASVGPLLVPELGLAWAQLGTLIGVYMLPGAFFALPGGMLGQRLGERRTVVASLALMVAGGLVTAASHGFALAVSGRLLSGVGAVLMNILLAKMVADWFAEGELTTAMAIMLSSWPVGLGLAAATLGGVATASSWRMAVATTA--VAAALGLVL 175          
BLAST of mRNA_P-wetherbeei_contig1662.6.1 vs. uniprot
Match: A0A2V7BAH7_9BACT (MFS domain-containing protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7BAH7_9BACT)

HSP 1 Score: 130 bits (328), Expect = 3.530e-33
Identity = 75/179 (41.90%), Postives = 117/179 (65.36%), Query Frame = 1
Query:    1 RWGVLALMFLVGLAAAMQVQSVQALAPLLVARVGLSYAEIGTLTGLFMLPGVFLAMPGGMLAARLGDRRAMAIALSLMLVSSLLFAATESYAVMVVARLVGGSGAAVLTTQGLKVVTDWFAGREISTAMAINAASFGLGIGMATGLLSGIAAVSSWQAAMLASAALIGAALAIVLAVYR 537
            RW  LA++F+   +   Q QSV ++ PLLV  +GL++A++GTL GL+MLPG F A+PGGML  R G+RR +  +L+LM+   L+ AA+  +AV    R++ G+GA ++     K+V DWFA  E++TAMA+  +S+ +G+G+A   L G+A  SSW+ A++A+       L ++  VYR
Sbjct:    4 RWVALAIVFVTRTSMGYQFQSVASVGPLLVPALGLTWAQLGTLIGLYMLPGAFFALPGGMLGQRFGERRTVVASLALMVAGGLVTAASHGFAVAAAGRVLSGAGAVLMNILLAKMVADWFAEGELTTAMAVMLSSWPVGLGLAAATLGGLATRSSWRMAIVATGLAAALGLVLIAFVYR 182          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1662.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V6WMI5_9BACT2.540e-3845.81Arabinose ABC transporter permease n=2 Tax=Candida... [more]
A0A3N5IER3_9BACT8.110e-3745.14MFS transporter (Fragment) n=1 Tax=Candidatus Roku... [more]
A0A2V6YDB6_9BACT1.680e-3546.29Arabinose ABC transporter permease n=1 Tax=Candida... [more]
UPI002013832F1.650e-3445.25MFS transporter n=1 Tax=Bradyrhizobium sp. AUGA SZ... [more]
A0A2V7HKX2_9BACT4.040e-3441.90Arabinose ABC transporter permease n=2 Tax=Candida... [more]
UPI0015526C076.460e-3445.81MFS transporter n=1 Tax=Alterinioella nitratireduc... [more]
A0A2V6QUG2_9BACT9.450e-3443.58MFS domain-containing protein n=2 Tax=Candidatus R... [more]
A0A2V7AD43_9BACT2.830e-3341.90MFS domain-containing protein n=3 Tax=Candidatus R... [more]
A0A1Q7Y5A5_9BACT2.830e-3344.57MFS domain-containing protein n=4 Tax=unclassified... [more]
A0A2V7BAH7_9BACT3.530e-3341.90MFS domain-containing protein n=1 Tax=Candidatus R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1662contigP-wetherbeei_contig1662:6204..6740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1298867.AUES01000018_gene4173
PFAMsMFS_1
Model size537
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue3.77e-27
EggNOG OGsCOG0477@1|root,COG2814@2|Bacteria,1R7EW@1224|Proteobacteria,2TXMM@28211|Alphaproteobacteria,3JRUD@41294|Bradyrhizobiaceae
DescriptionMajor Facilitator Superfamily
Cds size516
COG categoryEGP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.362263-UTR-P-wetherbeei_contig1662:6203..62241683186092.362263-UTR-P-wetherbeei_contig1662:6203..6224Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1662 6204..6224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.3774505-CDS-P-wetherbeei_contig1662:6224..67401683186092.3774505-CDS-P-wetherbeei_contig1662:6224..6740Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1662 6225..6740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1662.6.1prot_P-wetherbeei_contig1662.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1662 6225..6740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1662.6.1

>prot_P-wetherbeei_contig1662.6.1 ID=prot_P-wetherbeei_contig1662.6.1|Name=mRNA_P-wetherbeei_contig1662.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
MFLVGLAAAMQVQSVQALAPLLVARVGLSYAEIGTLTGLFMLPGVFLAMP
GGMLAARLGDRRAMAIALSLMLVSSLLFAATESYAVMVVARLVGGSGAAV
LTTQGLKVVTDWFAGREISTAMAINAASFGLGIGMATGLLSGIAAVSSWQ
AAMLASAALIGAALAIVLAVYR
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mRNA from alignment at P-wetherbeei_contig1662:6204..6740+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1662.6.1 ID=mRNA_P-wetherbeei_contig1662.6.1|Name=mRNA_P-wetherbeei_contig1662.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=537bp|location=Sequence derived from alignment at P-wetherbeei_contig1662:6204..6740+ (Phaeothamnion wetherbeei SAG_119_79)
CGCTGGGGCGTGCTGGCCCTGATGTTCCTGGTGGGCCTGGCCGCGGCCAT GCAGGTCCAGAGCGTGCAGGCGCTGGCGCCGCTGCTGGTCGCGCGCGTCG GGCTCTCGTACGCCGAGATCGGCACGCTGACCGGGCTCTTCATGCTGCCC GGGGTGTTCCTCGCGATGCCCGGCGGGATGCTCGCCGCGCGCCTCGGCGA CCGGCGGGCGATGGCGATCGCGCTGTCGCTGATGCTCGTATCGTCGCTGC TGTTCGCCGCGACAGAGTCGTATGCGGTGATGGTCGTCGCGCGCCTCGTG GGCGGCAGCGGCGCGGCCGTGCTGACCACGCAGGGGCTGAAAGTCGTGAC CGACTGGTTCGCCGGCCGCGAGATCTCCACCGCGATGGCGATCAATGCCG CGAGCTTCGGCCTCGGCATCGGGATGGCCACTGGGCTGCTCTCGGGTATC GCGGCGGTGAGTTCATGGCAGGCCGCAATGCTGGCGAGCGCCGCGCTCAT CGGGGCGGCCCTCGCCATCGTGCTGGCGGTCTATCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1662:6204..6740+

>mRNA_P-wetherbeei_contig1662.6.1 ID=mRNA_P-wetherbeei_contig1662.6.1|Name=mRNA_P-wetherbeei_contig1662.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig1662:6204..6740+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCCTGGTGGGCCTGGCCGCGGCCATGCAGGTCCAGAGCGTGCAGGC
GCTGGCGCCGCTGCTGGTCGCGCGCGTCGGGCTCTCGTACGCCGAGATCG
GCACGCTGACCGGGCTCTTCATGCTGCCCGGGGTGTTCCTCGCGATGCCC
GGCGGGATGCTCGCCGCGCGCCTCGGCGACCGGCGGGCGATGGCGATCGC
GCTGTCGCTGATGCTCGTATCGTCGCTGCTGTTCGCCGCGACAGAGTCGT
ATGCGGTGATGGTCGTCGCGCGCCTCGTGGGCGGCAGCGGCGCGGCCGTG
CTGACCACGCAGGGGCTGAAAGTCGTGACCGACTGGTTCGCCGGCCGCGA
GATCTCCACCGCGATGGCGATCAATGCCGCGAGCTTCGGCCTCGGCATCG
GGATGGCCACTGGGCTGCTCTCGGGTATCGCGGCGGTGAGTTCATGGCAG
GCCGCAATGCTGGCGAGCGCCGCGCTCATCGGGGCGGCCCTCGCCATCGT
GCTGGCGGTCTATCGC
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