mRNA_P-wetherbeei_contig16572.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig16572.1.1
Unique NamemRNA_P-wetherbeei_contig16572.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig16572.1.1 vs. uniprot
Match: D8LBP0_ECTSI (Expressed protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP0_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 3.850e-45
Identity = 82/114 (71.93%), Postives = 95/114 (83.33%), Query Frame = 1
Query:   28 DVCDDAKLAVVAKGLGPAAVAAGVPAVISAGIWPGVDQIMALEACEMLGGADSVESVDFSAFTAGTGNAGTTILSATFLILCEKVLGYKQGRAVYHESASDFRFVDFGKGVGPR 369
            DVCDDA+LA VAK L   A  AGV A ISAGIWPG+DQ+MA+EACEMLGGA  VES+DFSA+TAGTGNAGTTILSATFLILCEKVLG+K G  ++HE AS F+ VDFG+ +G +
Sbjct:  179 DVCDDARLATVAKALNEKAQEAGVSATISAGIWPGIDQLMAVEACEMLGGASEVESIDFSAYTAGTGNAGTTILSATFLILCEKVLGFKDGNEIFHEPASGFKKVDFGQSIGEK 292          
BLAST of mRNA_P-wetherbeei_contig16572.1.1 vs. uniprot
Match: A0A4D9D814_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D814_9STRA)

HSP 1 Score: 137 bits (345), Expect = 4.160e-36
Identity = 69/123 (56.10%), Postives = 90/123 (73.17%), Query Frame = 1
Query:   28 DVCDDAKLAVVAKGLGPAAVAAGVPAVISAGIWPGVDQIMALEACEMLGGADSVESVDFSAFTAGTGNAGTTILSATFLILCEKVLGYKQGRAVYHESASDFRFVDFGKGVGPRQVFRMNIIE 396
            DVCDD  LA +AKG    A    VP +IS G+WPG+  +MA++  E +GG ++ + ++F  FT+G+G AGTTILSATFLIL EKVL Y  GR  Y+++ASDFR  DFGKG+G RQVFRMN++E
Sbjct:  151 DVCDDIHLAQLAKGYDGEARKGNVPCLISTGVWPGISSLMAVDVAEAVGGIEATDKIEFEFFTSGSGGAGTTILSATFLILSEKVLAYVNGRPHYYDAASDFRKADFGKGIGLRQVFRMNLLE 273          
BLAST of mRNA_P-wetherbeei_contig16572.1.1 vs. uniprot
Match: A0A0G4EJV0_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJV0_VITBC)

HSP 1 Score: 137 bits (345), Expect = 7.420e-36
Identity = 69/123 (56.10%), Postives = 93/123 (75.61%), Query Frame = 1
Query:   28 DVCDDAKLAVVAKGLGPAAVAAGVPAVISAGIWPGVDQIMALEACEMLGGADSVESVDFSAFTAGTGNAGTTILSATFLILCEKVLGYKQGRAVYHESASDFRFVDFGKGVGPRQVFRMNIIE 396
            DVCDD   A++AK +   AV+ GV A++S GIWPGV  +MALEA E+LGG D VES +FS FTAG+G AG T++SATFLIL EK L Y++G AV++ + S  R VDFG+ +G R+V+R+N++E
Sbjct:  172 DVCDDYSAAMMAKQMHEEAVSKGVTAILSGGIWPGVSNLMALEAAELLGGVDKVESTEFSFFTAGSGGAGATLISATFLILAEKALAYEKGEAVHYPAGSGIRSVDFGESIGSRKVYRINLLE 294          
BLAST of mRNA_P-wetherbeei_contig16572.1.1 vs. uniprot
Match: K8YW21_NANGC (RRM domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YW21_NANGC)

HSP 1 Score: 137 bits (345), Expect = 3.680e-35
Identity = 69/123 (56.10%), Postives = 90/123 (73.17%), Query Frame = 1
Query:   28 DVCDDAKLAVVAKGLGPAAVAAGVPAVISAGIWPGVDQIMALEACEMLGGADSVESVDFSAFTAGTGNAGTTILSATFLILCEKVLGYKQGRAVYHESASDFRFVDFGKGVGPRQVFRMNIIE 396
            DVCDD  LA +AKG    A    VP +IS G+WPG+  +MA++  E +GG ++ + ++F  FT+G+G AGTTILSATFLIL EKVL Y  GR  Y+++ASDFR  DFGKG+G RQVFRMN++E
Sbjct:  131 DVCDDIHLAQLAKGYDGEARKGNVPCLISTGVWPGISSLMAVDVAEAVGGIEATDKIEFEFFTSGSGGAGTTILSATFLILSEKVLAYVNGRPHYYDAASDFRKADFGKGIGLRQVFRMNLLE 253          
BLAST of mRNA_P-wetherbeei_contig16572.1.1 vs. uniprot
Match: A0A163YDL2_9SYNE (Putative trans-acting enoyl reductasec n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A163YDL2_9SYNE)

HSP 1 Score: 114 bits (285), Expect = 1.190e-27
Identity = 65/120 (54.17%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   28 DVCDDAKLAVVAKGLGPAAVAAGVPAVISAGIWPGVDQIMALEACEMLGGADSVESVDFSAFTAGTGNAGTTILSATFLILCEKVLGYKQGRAVYHESASDFRFVDFGKGVGPRQVFRMN 387
            DVCD+  L+  AK L   AVAAGVPAV+S GIWPGV  +MA EA + LGG +  E V+FS FTAGTG AG TI+SATFL+L  +VL Y  G   + E  ++ R VDFG GVG    F ++
Sbjct:  116 DVCDEFSLSRHAKDLSGDAVAAGVPAVVSCGIWPGVSALMAAEAVQKLGGPEVCERVEFSFFTAGTGGAGPTIVSATFLLLASRVLNYVNGWLTFKEPWTERRVVDFGAGVGSHACFLLD 235          
BLAST of mRNA_P-wetherbeei_contig16572.1.1 vs. uniprot
Match: A0A2D5RBX5_9SYNE (Sacchrp_dh_NADP domain-containing protein n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A2D5RBX5_9SYNE)

HSP 1 Score: 113 bits (282), Expect = 4.330e-27
Identity = 63/120 (52.50%), Postives = 79/120 (65.83%), Query Frame = 1
Query:   28 DVCDDAKLAVVAKGLGPAAVAAGVPAVISAGIWPGVDQIMALEACEMLGGADSVESVDFSAFTAGTGNAGTTILSATFLILCEKVLGYKQGRAVYHESASDFRFVDFGKGVGPRQVFRMN 387
            DVCD+  L+  AK L   A AAG+PAV+S GIWPGV  +MA+EA + LGG +S E ++ S FTAGTG AG TI+SATFL+L  KVL Y  G     E  ++ R VDFG GVG    F ++
Sbjct:  140 DVCDEFALSRHAKELSSEAAAAGIPAVVSCGIWPGVSALMAIEAAQQLGGPESCERIELSFFTAGTGGAGPTIVSATFLLLATKVLTYLDGSLTLKEPWTERRVVDFGSGVGRHACFLLD 259          
BLAST of mRNA_P-wetherbeei_contig16572.1.1 vs. uniprot
Match: A0A164A1T4_9SYNE (Saccharopine dehydrogenase n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A164A1T4_9SYNE)

HSP 1 Score: 112 bits (280), Expect = 6.190e-27
Identity = 62/112 (55.36%), Postives = 76/112 (67.86%), Query Frame = 1
Query:   28 DVCDDAKLAVVAKGLGPAAVAAGVPAVISAGIWPGVDQIMALEACEMLGGADSVESVDFSAFTAGTGNAGTTILSATFLILCEKVLGYKQGRAVYHESASDFRFVDFGKGVG 363
            DVCD+  L+  AK L   A AAG+PAV+S GIWPGV  +MA EA + LGGA S E ++ S FTAGTG AG TI+SATFL+L  KVL Y+ G     +  ++ R VDFG GVG
Sbjct:  115 DVCDEYSLSRHAKDLSGEAAAAGIPAVVSCGIWPGVSALMAAEAVQQLGGASSCERIELSFFTAGTGGAGPTIVSATFLLLATKVLTYRDGMLTLKDPWTERRLVDFGDGVG 226          
BLAST of mRNA_P-wetherbeei_contig16572.1.1 vs. uniprot
Match: A0A7S4BYW2_CHRCT (Hypothetical protein (Fragment) n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BYW2_CHRCT)

HSP 1 Score: 109 bits (273), Expect = 7.520e-27
Identity = 63/114 (55.26%), Postives = 79/114 (69.30%), Query Frame = 1
Query:   28 DVCDDAKLAVVAKGLGPAAVAAGVPAVISAGIWPGVDQIMALEACEMLGGADSVESVDFSAFTAGTGNAGTTILSATFLILCEKVLGYKQGRAVYHESASDFRFVDFGKGVGPR 369
            DVCD+ +L+ V+K L   A +AG+PAV+S GIWPG   +MA EA E LGG  S + +D S FTAGTGNAG TI+SATFL+LC++ L +  G  V  E  +D R VDFG GVG R
Sbjct:  122 DVCDEWELSRVSKDLHAEAASAGIPAVVSCGIWPGASALMAAEAVERLGG--SCDELDLSFFTAGTGNAGPTIVSATFLLLCQQALTFSGGVEVMREPWTDDRRVDFGPGVGVR 233          
BLAST of mRNA_P-wetherbeei_contig16572.1.1 vs. uniprot
Match: R1DPQ6_EMIHU (Sacchrp_dh_NADP domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DPQ6_EMIHU)

HSP 1 Score: 108 bits (269), Expect = 2.320e-25
Identity = 62/120 (51.67%), Postives = 77/120 (64.17%), Query Frame = 1
Query:   28 DVCDDAKLAVVAKGLGPAAVAAGVPAVISAGIWPGVDQIMALEACEMLGGADSVESVDFSAFTAGTGNAGTTILSATFLILCEKVLGYKQGRAVYHESASDFRFVDFGKGVGPRQVFRMN 387
            DVCD+ +LA  AK L   A AAGVP V+S GIWPGV  +MA EA   LGG  + E ++FS FTAGTG AG TI+SATFL+L  KV  Y  G  V  E   D +  DFG+GVG  + + ++
Sbjct:  120 DVCDELQLARNAKALDADAAAAGVPCVVSCGIWPGVSALMAAEAVNKLGGTGACERLEFSFFTAGTGGAGPTIVSATFLLLATKVAMYVDGELVEEEPWLDRQVRDFGEGVGEHECYTLD 239          
BLAST of mRNA_P-wetherbeei_contig16572.1.1 vs. uniprot
Match: A0A2E0ANP0_9CYAN (Sacchrp_dh_NADP domain-containing protein n=1 Tax=Cyanobium sp. NAT70 TaxID=2024872 RepID=A0A2E0ANP0_9CYAN)

HSP 1 Score: 106 bits (265), Expect = 8.590e-25
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 1
Query:   28 DVCDDAKLAVVAKGLGPAAVAAGVPAVISAGIWPGVDQIMALEACEMLGGADSVESVDFSAFTAGTGNAGTTILSATFLILCEKVLGYKQGRAVYHESASDFRFVDFGKGVGPRQVFRMN 387
            DVCD+  L   AK L   A+AAGVPAV+S GIWPGV  +MA  A E LGG ++ + V+ S FTAGTG AG TI+SATFL+L  +V+    G  ++ +  ++ R VDFG G+G R+ F ++
Sbjct:  113 DVCDELGLTRNAKALSAEAIAAGVPAVVSCGIWPGVSALMAAVAVERLGGPETCDRVELSFFTAGTGGAGPTIVSATFLLLASEVVTVVDGVLMHQQPWTERRVVDFGGGIGERECFLLD 232          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig16572.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBP0_ECTSI3.850e-4571.93Expressed protein n=1 Tax=Ectocarpus siliculosus T... [more]
A0A4D9D814_9STRA4.160e-3656.10Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A0G4EJV0_VITBC7.420e-3656.10Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
K8YW21_NANGC3.680e-3556.10RRM domain-containing protein (Fragment) n=1 Tax=N... [more]
A0A163YDL2_9SYNE1.190e-2754.17Putative trans-acting enoyl reductasec n=3 Tax=unc... [more]
A0A2D5RBX5_9SYNE4.330e-2752.50Sacchrp_dh_NADP domain-containing protein n=3 Tax=... [more]
A0A164A1T4_9SYNE6.190e-2755.36Saccharopine dehydrogenase n=3 Tax=unclassified Sy... [more]
A0A7S4BYW2_CHRCT7.520e-2755.26Hypothetical protein (Fragment) n=1 Tax=Chrysotila... [more]
R1DPQ6_EMIHU2.320e-2551.67Sacchrp_dh_NADP domain-containing protein n=2 Tax=... [more]
A0A2E0ANP0_9CYAN8.590e-2549.17Sacchrp_dh_NADP domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig16572contigP-wetherbeei_contig16572:427..1419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBP0
PFAMsSacchrp_dh_NADP
Model size396
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.32e-46
EggNOG OGsCOG1748@1|root,2QQSS@2759|Eukaryota
DescriptionSaccharopine dehydrogenase NADP binding domain
Cds size396
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186091.0792003-CDS-P-wetherbeei_contig16572:426..5821683186091.0792003-CDS-P-wetherbeei_contig16572:426..582Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16572 427..582 +
1683186091.0883958-CDS-P-wetherbeei_contig16572:907..10481683186091.0883958-CDS-P-wetherbeei_contig16572:907..1048Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16572 908..1048 +
1683186091.096413-CDS-P-wetherbeei_contig16572:1320..14191683186091.096413-CDS-P-wetherbeei_contig16572:1320..1419Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig16572 1321..1419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig16572.1.1prot_P-wetherbeei_contig16572.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig16572 427..1419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig16572.1.1

>prot_P-wetherbeei_contig16572.1.1 ID=prot_P-wetherbeei_contig16572.1.1|Name=mRNA_P-wetherbeei_contig16572.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
APAATAAAADVCDDAKLAVVAKGLGPAAVAAGVPAVISAGIWPGVDQIMA
LEACEMLGGADSVESVDFSAFTAGTGNAGTTILSATFLILCEKVLGYKQG
RAVYHESASDFRFVDFGKGVGPRQVFRMNIIE
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mRNA from alignment at P-wetherbeei_contig16572:427..1419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig16572.1.1 ID=mRNA_P-wetherbeei_contig16572.1.1|Name=mRNA_P-wetherbeei_contig16572.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=993bp|location=Sequence derived from alignment at P-wetherbeei_contig16572:427..1419+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGGCCGCGACGGCGGCGGCCGCAGACGTCTGTGACGACGCGAAGCT GGCGGTGGTGGCAAAAGGGCTGGGGCCTGCGGCGGTTGCCGCGGGAGTCC CTGCCGTCATCTCCGCCGGCATTTGGCCCGGAGTTGACCAAATAATGGCA TTAGAGGTGAGCACTGAGAGCCTTTGGCGTTGGCAATTCGAAGCTCTATG TGCATCCTTGCTGTTTTATGGCATGCATGTTTTCATCTCTGTTATCGAGG ATGGCGTTTCACGCTCGCGGCAACGAGTTGCGCTTCTGCATGGTATGGCG AGTTAAATGGATTATCTTTGCTGGAGAGAGCAAGCGAGCCTAGGTGGTAA GTCGTTACCCCCTGCTTACGCGGTTCCGGCGGCTCACCTTCCTTTCTTAC TACAATTTTTTACCTTTCGTGCATTCTTTGAAAGTAATTAATTCTCTTTG CGGCTCTGGTTTCTCCATTTCTGTGCGTTAGGCGTGCGAAATGCTGGGTG GGGCGGACAGCGTGGAGAGTGTCGACTTCAGCGCCTTCACCGCTGGGACG GGCAATGCCGGCACCACCATCCTCAGCGCCACATTTCTGATTCTCTGCGA AAAAGTCTTGGGCTACAAGCAGGTGCGCGTCGTGTTCGCGTTTCGGCGGC CGCTGCCGCTGCCGTGGTTGCGGCCCCTGGCCAAAGTTATTGCGCCGCCC TTGCCGCCACTATGGGCTGCTGCTGTTGCTGCTTGGGCCGCTGCCATTGC TGCAGCCCTCCATGTGTCACTGCTTTAATCCCTCATTTCTCGCTGGTCCT GCAATCGCCGTTGCCACGATCACCGACCGTTGCCGCCGCCACCGTCGCCA CCGCTGCCGCCGCGGACGCTGCCTGCGAACTTTGGGTTTCGCAGGGTCGA GCTGTATACCACGAATCCGCCAGCGATTTCCGATTCGTCGATTTCGGCAA GGGCGTTGGGCCACGACAAGTTTTCAGAATGAACATAATCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig16572:427..1419+

>mRNA_P-wetherbeei_contig16572.1.1 ID=mRNA_P-wetherbeei_contig16572.1.1|Name=mRNA_P-wetherbeei_contig16572.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig16572:427..1419+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCCGGCCGCGACGGCGGCGGCCGCAGACGTCTGTGACGACGCGAAGCT
GGCGGTGGTGGCAAAAGGGCTGGGGCCTGCGGCGGTTGCCGCGGGAGTCC
CTGCCGTCATCTCCGCCGGCATTTGGCCCGGAGTTGACCAAATAATGGCA
TTAGAGGCGTGCGAAATGCTGGGTGGGGCGGACAGCGTGGAGAGTGTCGA
CTTCAGCGCCTTCACCGCTGGGACGGGCAATGCCGGCACCACCATCCTCA
GCGCCACATTTCTGATTCTCTGCGAAAAAGTCTTGGGCTACAAGCAGGGT
CGAGCTGTATACCACGAATCCGCCAGCGATTTCCGATTCGTCGATTTCGG
CAAGGGCGTTGGGCCACGACAAGTTTTCAGAATGAACATAATCGAG
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