prot_P-wetherbeei_contig9604.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig9604.1.1
Unique Nameprot_P-wetherbeei_contig9604.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length317
Homology
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BLAST of mRNA_P-wetherbeei_contig9604.1.1 vs. uniprot
Match: D7G4J4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J4_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.040e-8
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 0 
Query:  246 DEFKCPICWEMLARPVTLMCGHTACEVCVAQHFKTQIHRAA 286
            D+F+C ICWEMLARPVTL CGHTACE C+A++ + Q    A
Sbjct:  185 DDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQA 225
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BLAST of mRNA_P-wetherbeei_contig9604.1.1 vs. uniprot
Match: A0A6H5JAA6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 6.580e-8
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 0 
Query:  246 DEFKCPICWEMLARPVTLMCGHTACEVCVAQHFKTQIHRAA 286
            D+F+C ICWEMLARPVTL CGHTACE C+A++ + Q    A
Sbjct:  440 DDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQA 480
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BLAST of mRNA_P-wetherbeei_contig9604.1.1 vs. uniprot
Match: A0A835Z6P8_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6P8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.140e-7
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 0 
Query:  246 DEFKCPICWEMLARPVTLMCGHTACEVCVAQHFKTQIHRAAAGP 289
            DEF CPICW++L RPV+L CGHT CE C A +  TQ+    A P
Sbjct:  135 DEFMCPICWDLLCRPVSLECGHTLCEKCCALYLDTQLRNQTAIP 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9604.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4J4_ECTSI6.040e-863.41RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JAA6_9PHAE6.580e-863.41RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835Z6P8_9STRA4.140e-756.82RING-type domain-containing protein n=1 Tax=Tribon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF15227zf-C3HC4_4coord: 250..279
e-value: 8.6E-8
score: 32.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..186
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..105
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 236..280
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 227..286
e-value: 9.9E-12
score: 46.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9604contigP-wetherbeei_contig9604:94..1696 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9604.1.1mRNA_P-wetherbeei_contig9604.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig9604 2..1696 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig9604.1.1 ID=prot_P-wetherbeei_contig9604.1.1|Name=mRNA_P-wetherbeei_contig9604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=317bp
MENARPAKAPKRRRGANSSTPAAIPDSPRSAEKGKRRRVAPGASSSHGGA
AAGDAVPDAMEIEKSEVAILRGESPDPNSENDGAAAAAPTTSARSASSNG
TSAGESAGYPARGPPENGGGFTPGASHGQGRGPVNPCACPLVGMPISELT
AASGRQSGRAAPAAPLRIERPASGGGGGGGGGSSGGNSGRGCASVFSNRG
GAASGGVGRQAFGATTAATGTAGGAAATSGAAATAGAGGSPRQPDDEFKC
PICWEMLARPVTLMCGHTACEVCVAQHFKTQIHRAAAGPFGGGGAAAGAG
AGNAAAGGGAAADAVNG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD