mRNA_P-wetherbeei_contig9604.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9604.1.1
Unique NamemRNA_P-wetherbeei_contig9604.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9604.1.1 vs. uniprot
Match: D7G4J4_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J4_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 8.340e-8
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 3 
Query:  828 DEFKCPICWEMLARPVTLMCGHTACEVCVAQHFKTQIHRAA 950
            D+F+C ICWEMLARPVTL CGHTACE C+A++ + Q    A
Sbjct:  185 DDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQA 225
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BLAST of mRNA_P-wetherbeei_contig9604.1.1 vs. uniprot
Match: A0A6H5JAA6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAA6_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 9.140e-8
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 3 
Query:  828 DEFKCPICWEMLARPVTLMCGHTACEVCVAQHFKTQIHRAA 950
            D+F+C ICWEMLARPVTL CGHTACE C+A++ + Q    A
Sbjct:  440 DDFQCNICWEMLARPVTLACGHTACESCMAKYLRAQAQAQA 480
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BLAST of mRNA_P-wetherbeei_contig9604.1.1 vs. uniprot
Match: A0A835Z6P8_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6P8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.550e-7
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 3 
Query:  828 DEFKCPICWEMLARPVTLMCGHTACEVCVAQHFKTQIHRAAAGP 959
            DEF CPICW++L RPV+L CGHT CE C A +  TQ+    A P
Sbjct:  135 DEFMCPICWDLLCRPVSLECGHTLCEKCCALYLDTQLRNQTAIP 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9604.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G4J4_ECTSI8.340e-863.41RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JAA6_9PHAE9.140e-863.41RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835Z6P8_9STRA5.550e-756.82RING-type domain-containing protein n=1 Tax=Tribon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9604contigP-wetherbeei_contig9604:2..1696 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog8479.XP_008173898.1
Preferred nameTRIM10
PFAMsPRY,SPRY,zf-B_box,zf-C3HC4,zf-C3HC4_4
Model size1045
Max annot lvl33208|Metazoa
KEGG koko:K12002,ko:K12009,ko:K12015
Hectar predicted targeting categoryother localisation
GOsGO:0002262,GO:0002376,GO:0002520,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006952,GO:0006955,GO:0007275,GO:0008150,GO:0009987,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0032501,GO:0032502,GO:0034101,GO:0042592,GO:0043900,GO:0043901,GO:0043903,GO:0044424,GO:0044464,GO:0045087,GO:0046596,GO:0046597,GO:0048513,GO:0048519,GO:0048525,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050792,GO:0050896,GO:0065007,GO:0065008,GO:1903900,GO:1903901
Exons3
Evalue5.8e-05
EggNOG OGsKOG2177@1|root,KOG2177@2759|Eukaryota,39T5K@33154|Opisthokonta,3BEAZ@33208|Metazoa,3D1FK@33213|Bilateria,48HY4@7711|Chordata
EC2.3.2.27
DescriptionB-Box-type zinc finger
Cds size951
COG categoryO
BRITEko00000,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187101.3887267-UTR-P-wetherbeei_contig9604:1..931683187101.3887267-UTR-P-wetherbeei_contig9604:1..93Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9604 2..93 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187101.4019253-CDS-P-wetherbeei_contig9604:93..8581683187101.4019253-CDS-P-wetherbeei_contig9604:93..858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9604 94..858 +
1683187101.4117167-CDS-P-wetherbeei_contig9604:1117..11321683187101.4117167-CDS-P-wetherbeei_contig9604:1117..1132Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9604 1118..1132 +
1683187101.4216502-CDS-P-wetherbeei_contig9604:1525..16961683187101.4216502-CDS-P-wetherbeei_contig9604:1525..1696Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9604 1526..1696 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9604.1.1prot_P-wetherbeei_contig9604.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9604 94..1696 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9604.1.1

>prot_P-wetherbeei_contig9604.1.1 ID=prot_P-wetherbeei_contig9604.1.1|Name=mRNA_P-wetherbeei_contig9604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=317bp
MENARPAKAPKRRRGANSSTPAAIPDSPRSAEKGKRRRVAPGASSSHGGA
AAGDAVPDAMEIEKSEVAILRGESPDPNSENDGAAAAAPTTSARSASSNG
TSAGESAGYPARGPPENGGGFTPGASHGQGRGPVNPCACPLVGMPISELT
AASGRQSGRAAPAAPLRIERPASGGGGGGGGGSSGGNSGRGCASVFSNRG
GAASGGVGRQAFGATTAATGTAGGAAATSGAAATAGAGGSPRQPDDEFKC
PICWEMLARPVTLMCGHTACEVCVAQHFKTQIHRAAAGPFGGGGAAAGAG
AGNAAAGGGAAADAVNG
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mRNA from alignment at P-wetherbeei_contig9604:2..1696+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9604.1.1 ID=mRNA_P-wetherbeei_contig9604.1.1|Name=mRNA_P-wetherbeei_contig9604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1695bp|location=Sequence derived from alignment at P-wetherbeei_contig9604:2..1696+ (Phaeothamnion wetherbeei SAG_119_79)
CTACTTATAATCAGTTGCTAATAACATGAAGAAAAGAAAAAAAAAAGGGG
CCACAAACAGCAGGCAGTGTTCGTAGTCCAAATCGTTCGACAATGGAGAA
CGCCCGTCCGGCAAAGGCACCGAAGCGAAGACGGGGAGCGAATTCTTCGA
CTCCGGCAGCCATTCCGGACTCTCCCAGGAGTGCCGAGAAAGGAAAGCGA
CGGAGAGTGGCGCCAGGAGCTTCTTCTAGCCATGGCGGGGCAGCAGCAGG
CGATGCAGTGCCTGATGCGATGGAGATCGAAAAATCAGAGGTCGCCATCC
TCCGCGGCGAATCGCCCGACCCAAATTCGGAGAACGACGGCGCTGCTGCT
GCCGCCCCGACGACGTCGGCACGATCGGCTTCCAGCAATGGCACTTCCGC
CGGGGAATCAGCTGGTTACCCGGCCAGGGGTCCGCCAGAAAACGGCGGTG
GCTTCACTCCTGGCGCATCGCACGGCCAAGGAAGAGGCCCTGTCAATCCT
TGTGCTTGCCCGCTGGTTGGCATGCCAATCTCCGAGCTGACAGCCGCTTC
CGGTCGACAATCTGGACGGGCTGCGCCTGCTGCGCCGCTGCGCATCGAGA
GGCCGGCCTCTGGCGGCGGCGGCGGCGGCGGTGGCGGCAGCAGCGGCGGC
AACAGCGGCAGGGGCTGCGCCAGTGTCTTCAGCAATAGAGGCGGCGCTGC
AAGCGGCGGCGTTGGCCGACAAGCGTTTGGGGCAACGACTGCAGCCACCG
GTACTGCTGGCGGTGCCGCAGCTACCTCGGGCGCGGCTGCCACTGCAGGT
GCAGGAGGCTCGCCGCGTCAGCCTGACGACGAATTCAAGTGCCCGATCTG
CTGGGAGGTGAGCAACGCAAGGAGAGAAGCGAAGAATCCGAATATTTTCC
TCAAGCATATGGTTCAAGGGCATCGATCATCAATTGGGTCTTCCCCGTTC
GTAAACATTTACGATGACTGTACATCACATTTTCGTCTCTTGGCGTCATA
GTGAAGAGGGTTGTGGATGAGTTGCAGTGGAAAGATTGACCAGATCATCT
ATGTTGCCTCATCGCGCCGTTCTTTGCTTCCACAACCTATTCCCCGTACC
TCCTACGGGGGAACAGATGCTTGCGCGGCCGGTGAGTCGGGAGCGGTTGG
ACACGTAATGGGGGCGATTGTGGTTGCGATCAGTGCGTAAATCGCTTTAC
ATGGAAGGGGGAAGGGGAGATGTCACATTGGCATCCCATTTCGCAAGTAC
TGGCACGGTTATCGGAGGAATGGAAGGAAGAGAATACGCGCTCCTGCGCG
GCGCTTTCTCTCTGTCTTTCTGCCGTTTATTCGACAGCCTTTCCATCTGT
CCAAATTTCCATTCTTAGTCGGATTTCTGCTGTTTAATCTTCAGGACTGT
CGCAACACCCTTTCTCTGTGTTTATGGCGCGGGCTTAGGCGGCTGACTTC
AAATAAGAATACGCGTAAATCTTTTTCGTCCTACAACGATTTCCGCGTCC
CTTCCCCTCCCTTTGCGGCTACAGGTGACGCTTATGTGCGGCCACACCGC
TTGCGAAGTCTGCGTGGCGCAGCACTTCAAGACGCAGATCCATCGCGCCG
CCGCAGGACCGTTCGGTGGCGGCGGCGCCGCTGCTGGCGCTGGCGCCGGC
AACGCTGCTGCTGGCGGCGGCGCTGCAGCGGACGCAGTGAATGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9604:2..1696+

>mRNA_P-wetherbeei_contig9604.1.1 ID=mRNA_P-wetherbeei_contig9604.1.1|Name=mRNA_P-wetherbeei_contig9604.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig9604:2..1696+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGAACGCCCGTCCGGCAAAGGCACCGAAGCGAAGACGGGGAGCGAA
TTCTTCGACTCCGGCAGCCATTCCGGACTCTCCCAGGAGTGCCGAGAAAG
GAAAGCGACGGAGAGTGGCGCCAGGAGCTTCTTCTAGCCATGGCGGGGCA
GCAGCAGGCGATGCAGTGCCTGATGCGATGGAGATCGAAAAATCAGAGGT
CGCCATCCTCCGCGGCGAATCGCCCGACCCAAATTCGGAGAACGACGGCG
CTGCTGCTGCCGCCCCGACGACGTCGGCACGATCGGCTTCCAGCAATGGC
ACTTCCGCCGGGGAATCAGCTGGTTACCCGGCCAGGGGTCCGCCAGAAAA
CGGCGGTGGCTTCACTCCTGGCGCATCGCACGGCCAAGGAAGAGGCCCTG
TCAATCCTTGTGCTTGCCCGCTGGTTGGCATGCCAATCTCCGAGCTGACA
GCCGCTTCCGGTCGACAATCTGGACGGGCTGCGCCTGCTGCGCCGCTGCG
CATCGAGAGGCCGGCCTCTGGCGGCGGCGGCGGCGGCGGTGGCGGCAGCA
GCGGCGGCAACAGCGGCAGGGGCTGCGCCAGTGTCTTCAGCAATAGAGGC
GGCGCTGCAAGCGGCGGCGTTGGCCGACAAGCGTTTGGGGCAACGACTGC
AGCCACCGGTACTGCTGGCGGTGCCGCAGCTACCTCGGGCGCGGCTGCCA
CTGCAGGTGCAGGAGGCTCGCCGCGTCAGCCTGACGACGAATTCAAGTGC
CCGATCTGCTGGGAGATGCTTGCGCGGCCGGTGACGCTTATGTGCGGCCA
CACCGCTTGCGAAGTCTGCGTGGCGCAGCACTTCAAGACGCAGATCCATC
GCGCCGCCGCAGGACCGTTCGGTGGCGGCGGCGCCGCTGCTGGCGCTGGC
GCCGGCAACGCTGCTGCTGGCGGCGGCGCTGCAGCGGACGCAGTGAATGG
G
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