prot_P-wetherbeei_contig8391.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig8391.1.1
Unique Nameprot_P-wetherbeei_contig8391.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length102
Homology
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: D7G5C0_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C0_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 2.990e-44
Identity = 69/88 (78.41%), Postives = 80/88 (90.91%), Query Frame = 0
Query:    1 ALGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKM 88
            A+GVPIKLLHE E H +TVEMKNGE+YRG L+EAEDTMNCF+TGVTMT R+GRVSKLEQVYLRGSH+K +VLPD+LK AP+F+ VQKM
Sbjct:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKM 90          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A835ZED0_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZED0_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.800e-44
Identity = 69/89 (77.53%), Postives = 81/89 (91.01%), Query Frame = 0
Query:    1 ALGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMA 89
            A+GVPIKLLHE E H IT+EMKNGE+YRG L EAEDTMN F+T VTMTAR+GRVSKLEQVYLRGSH+K+++LPD+LK AP+F+GVQKMA
Sbjct:    6 AVGVPIKLLHEGEGHVITIEMKNGEIYRGRLMEAEDTMNSFITEVTMTARDGRVSKLEQVYLRGSHIKFIILPDLLKNAPVFKGVQKMA 94          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A6S9H3G1_HETAK (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H3G1_HETAK)

HSP 1 Score: 142 bits (358), Expect = 5.590e-42
Identity = 65/101 (64.36%), Postives = 83/101 (82.18%), Query Frame = 0
Query:    2 LGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHRENAAAAGRGGG 102
            +GVP+KLLHEAE H +T E+KNGE+YRG+LDEAEDTMNC ++ VT TARNG+VSKLE VY+RGSHVK ++LPD+L+ AP+F+ VQ +  +    AAGRG G
Sbjct:    6 IGVPVKLLHEAEGHVVTAELKNGEIYRGMLDEAEDTMNCAMSNVTFTARNGKVSKLESVYIRGSHVKLLILPDMLRNAPVFKKVQGLRGKNQTPAAGRGRG 106          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: W7TQG3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQG3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 4.430e-38
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 0
Query:    1 ALGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHRENAAAAGRGGG 102
            AL VP+KLL E E H +T E+K+GEVYRGLL E+EDTMN  L+ VT TARNG+V KLEQVYLRGSH+K++VLP+ILK AP+F+ VQ M  +E++  AGRG G
Sbjct:    6 ALSVPVKLLKEGEGHVVTAELKSGEVYRGLLMESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKFIVLPEILKHAPVFKKVQGMKKKESSKTAGRGRG 107          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A7S2S181_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S181_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.090e-37
Identity = 60/92 (65.22%), Postives = 76/92 (82.61%), Query Frame = 0
Query:    2 LGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHREN 93
            +GVPI++LHE E HTI+VE++NGE+YRG L EAEDTMNCFL  VTMTAR+GRVSKLEQVY+RGS VK ++LP++LK +P F  VQ M  + +
Sbjct:    6 IGVPIRILHEGEGHTISVELRNGEIYRGTLKEAEDTMNCFLENVTMTARDGRVSKLEQVYIRGSQVKLIILPEVLKHSPAFNKVQTMKKKND 97          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A8J2SMY3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMY3_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.130e-35
Identity = 55/93 (59.14%), Postives = 75/93 (80.65%), Query Frame = 0
Query:    2 LGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHRENA 94
            +GVPIKLLHE E H +TVE+K+GE+YRG LDE+E+TMNC LT +  TAR+GRVSK+E VY+RGS +K+++LPD+LK +P+F  V+ M   + A
Sbjct:    8 VGVPIKLLHEGEGHVVTVELKSGEIYRGRLDESEETMNCSLTDIVCTARDGRVSKMEHVYIRGSRIKFLILPDLLKHSPVFDKVKAMKQADEA 100          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: F0Y2Z6_AURAN (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Z6_AURAN)

HSP 1 Score: 124 bits (311), Expect = 8.260e-35
Identity = 56/99 (56.57%), Postives = 80/99 (80.81%), Query Frame = 0
Query:    1 ALGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVK-----YMVLPDILKAAPIFQGVQKMAHRENA 94
            A+GVPIKLLHE E H +T+E+KNGE+YRG LDE+E+TMNC +T V +TAR+GRV+KLE VY+RGS +K     +M+LPD+LK +P+F+ V+++   ++A
Sbjct:    7 AVGVPIKLLHEGEGHMVTIELKNGEIYRGHLDESEETMNCLVTDVVVTARDGRVTKLENVYIRGSQIKRERRAFMILPDLLKHSPVFEKVKELKKADDA 105          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A7S3B4W5_9EUKA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B4W5_9EUKA)

HSP 1 Score: 124 bits (312), Expect = 1.190e-34
Identity = 59/100 (59.00%), Postives = 80/100 (80.00%), Query Frame = 0
Query:    2 LGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHRENAAAAGRGG 101
            +G+PIK+LH+AE HT+T+E+KNGEV+RG LDEAED MNC L+  T TA++GRV+ L  V+LRGSHV++MVLPDILK AP F+ ++     ++A AA +GG
Sbjct:    5 VGIPIKVLHDAEGHTVTIELKNGEVFRGKLDEAEDNMNCHLSNCTKTAKDGRVNTLANVFLRGSHVRFMVLPDILKNAPFFKKIET----KSAKAAAKGG 100          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A183IUE8_9BILA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IUE8_9BILA)

HSP 1 Score: 121 bits (304), Expect = 1.780e-33
Identity = 56/89 (62.92%), Postives = 74/89 (83.15%), Query Frame = 0
Query:    1 ALGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMA 89
            ++GVPIK+LHEAE H IT+E  NGEVYRG L EAED MNC ++ +T+T R+GRVS+LE VY+RGS V++M+LPD+LK AP+F+ +QK A
Sbjct:    2 SIGVPIKILHEAEGHVITLETSNGEVYRGKLIEAEDNMNCQMSDLTVTYRDGRVSQLEHVYIRGSKVRFMILPDMLKNAPMFKNIQKGA 90          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A7S0I635_9EUKA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I635_9EUKA)

HSP 1 Score: 121 bits (304), Expect = 4.900e-33
Identity = 54/90 (60.00%), Postives = 70/90 (77.78%), Query Frame = 0
Query:    2 LGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHR 91
            +G+PIK+LH+AE HT+T+E+KNGE YRG LDEAED MNC L+  T T R+GRV+ L   +LRGSHV++MVLPDILK AP F+ +   A +
Sbjct:   36 IGIPIKVLHDAEGHTVTIELKNGETYRGKLDEAEDNMNCHLSNCTKTGRDGRVTTLANCFLRGSHVRFMVLPDILKNAPFFKKIDTKASK 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C0_ECTSI2.990e-4478.41Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A835ZED0_9STRA4.800e-4477.53Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A6S9H3G1_HETAK5.590e-4264.36Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hete... [more]
W7TQG3_9STRA4.430e-3864.71Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Mono... [more]
A0A7S2S181_9STRA1.090e-3765.22Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhiz... [more]
A0A8J2SMY3_9STRA1.130e-3559.14Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pela... [more]
F0Y2Z6_AURAN8.260e-3556.57Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aure... [more]
A0A7S3B4W5_9EUKA1.190e-3459.00Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hapt... [more]
A0A183IUE8_9BILA1.780e-3362.92Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Sobo... [more]
A0A7S0I635_9EUKA4.900e-3360.00Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Phae... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 7..72
e-value: 1.9E-14
score: 64.0
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 8..71
e-value: 6.0E-16
score: 57.9
NoneNo IPR availableGENE3D2.30.30.100coord: 1..74
e-value: 2.8E-29
score: 102.5
NoneNo IPR availablePANTHERPTHR23338:SF17SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3coord: 2..99
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 2..99
IPR034099Small nuclear ribonucleoprotein Sm D3CDDcd01721Sm_D3coord: 5..74
e-value: 9.67922E-43
score: 132.26
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 5..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8391contigP-wetherbeei_contig8391:1028..1523 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8391.1.1mRNA_P-wetherbeei_contig8391.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig8391 1028..1523 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig8391.1.1 ID=prot_P-wetherbeei_contig8391.1.1|Name=mRNA_P-wetherbeei_contig8391.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
ALGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTAR
NGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHRENAAAAGRG
GG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR027141LSm4/Sm_D1/D3
IPR034099SmD3
IPR010920LSM_dom_sf