mRNA_P-wetherbeei_contig8391.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8391.1.1
Unique NamemRNA_P-wetherbeei_contig8391.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: D7G5C0_ECTSI (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5C0_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 2.990e-44
Identity = 69/88 (78.41%), Postives = 80/88 (90.91%), Query Frame = 1
Query:    1 ALGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKM 264
            A+GVPIKLLHE E H +TVEMKNGE+YRG L+EAEDTMNCF+TGVTMT R+GRVSKLEQVYLRGSH+K +VLPD+LK AP+F+ VQKM
Sbjct:    3 AVGVPIKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGSHIKLVVLPDVLKNAPVFKPVQKM 90          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A835ZED0_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZED0_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.800e-44
Identity = 69/89 (77.53%), Postives = 81/89 (91.01%), Query Frame = 1
Query:    1 ALGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMA 267
            A+GVPIKLLHE E H IT+EMKNGE+YRG L EAEDTMN F+T VTMTAR+GRVSKLEQVYLRGSH+K+++LPD+LK AP+F+GVQKMA
Sbjct:    6 AVGVPIKLLHEGEGHVITIEMKNGEIYRGRLMEAEDTMNSFITEVTMTARDGRVSKLEQVYLRGSHIKFIILPDLLKNAPVFKGVQKMA 94          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A6S9H3G1_HETAK (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9H3G1_HETAK)

HSP 1 Score: 142 bits (358), Expect = 5.590e-42
Identity = 65/101 (64.36%), Postives = 83/101 (82.18%), Query Frame = 1
Query:    4 LGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHRENAAAAGRGGG 306
            +GVP+KLLHEAE H +T E+KNGE+YRG+LDEAEDTMNC ++ VT TARNG+VSKLE VY+RGSHVK ++LPD+L+ AP+F+ VQ +  +    AAGRG G
Sbjct:    6 IGVPVKLLHEAEGHVVTAELKNGEIYRGMLDEAEDTMNCAMSNVTFTARNGKVSKLESVYIRGSHVKLLILPDMLRNAPVFKKVQGLRGKNQTPAAGRGRG 106          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: W7TQG3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQG3_9STRA)

HSP 1 Score: 132 bits (333), Expect = 4.430e-38
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 1
Query:    1 ALGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHRENAAAAGRGGG 306
            AL VP+KLL E E H +T E+K+GEVYRGLL E+EDTMN  L+ VT TARNG+V KLEQVYLRGSH+K++VLP+ILK AP+F+ VQ M  +E++  AGRG G
Sbjct:    6 ALSVPVKLLKEGEGHVVTAELKSGEVYRGLLMESEDTMNVHLSDVTHTARNGKVRKLEQVYLRGSHLKFIVLPEILKHAPVFKKVQGMKKKESSKTAGRGRG 107          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A7S2S181_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S181_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.090e-37
Identity = 60/92 (65.22%), Postives = 76/92 (82.61%), Query Frame = 1
Query:    4 LGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHREN 279
            +GVPI++LHE E HTI+VE++NGE+YRG L EAEDTMNCFL  VTMTAR+GRVSKLEQVY+RGS VK ++LP++LK +P F  VQ M  + +
Sbjct:    6 IGVPIRILHEGEGHTISVELRNGEIYRGTLKEAEDTMNCFLENVTMTARDGRVSKLEQVYIRGSQVKLIILPEVLKHSPAFNKVQTMKKKND 97          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A8J2SMY3_9STRA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMY3_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.130e-35
Identity = 55/93 (59.14%), Postives = 75/93 (80.65%), Query Frame = 1
Query:    4 LGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHRENA 282
            +GVPIKLLHE E H +TVE+K+GE+YRG LDE+E+TMNC LT +  TAR+GRVSK+E VY+RGS +K+++LPD+LK +P+F  V+ M   + A
Sbjct:    8 VGVPIKLLHEGEGHVVTVELKSGEIYRGRLDESEETMNCSLTDIVCTARDGRVSKMEHVYIRGSRIKFLILPDLLKHSPVFDKVKAMKQADEA 100          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: F0Y2Z6_AURAN (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2Z6_AURAN)

HSP 1 Score: 124 bits (311), Expect = 8.260e-35
Identity = 56/99 (56.57%), Postives = 80/99 (80.81%), Query Frame = 1
Query:    1 ALGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVK-----YMVLPDILKAAPIFQGVQKMAHRENA 282
            A+GVPIKLLHE E H +T+E+KNGE+YRG LDE+E+TMNC +T V +TAR+GRV+KLE VY+RGS +K     +M+LPD+LK +P+F+ V+++   ++A
Sbjct:    7 AVGVPIKLLHEGEGHMVTIELKNGEIYRGHLDESEETMNCLVTDVVVTARDGRVTKLENVYIRGSQIKRERRAFMILPDLLKHSPVFEKVKELKKADDA 105          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A7S3B4W5_9EUKA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B4W5_9EUKA)

HSP 1 Score: 124 bits (312), Expect = 1.190e-34
Identity = 59/100 (59.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:    4 LGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHRENAAAAGRGG 303
            +G+PIK+LH+AE HT+T+E+KNGEV+RG LDEAED MNC L+  T TA++GRV+ L  V+LRGSHV++MVLPDILK AP F+ ++     ++A AA +GG
Sbjct:    5 VGIPIKVLHDAEGHTVTIELKNGEVFRGKLDEAEDNMNCHLSNCTKTAKDGRVNTLANVFLRGSHVRFMVLPDILKNAPFFKKIET----KSAKAAAKGG 100          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A183IUE8_9BILA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183IUE8_9BILA)

HSP 1 Score: 121 bits (304), Expect = 1.780e-33
Identity = 56/89 (62.92%), Postives = 74/89 (83.15%), Query Frame = 1
Query:    1 ALGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMA 267
            ++GVPIK+LHEAE H IT+E  NGEVYRG L EAED MNC ++ +T+T R+GRVS+LE VY+RGS V++M+LPD+LK AP+F+ +QK A
Sbjct:    2 SIGVPIKILHEAEGHVITLETSNGEVYRGKLIEAEDNMNCQMSDLTVTYRDGRVSQLEHVYIRGSKVRFMILPDMLKNAPMFKNIQKGA 90          
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Match: A0A7S0I635_9EUKA (Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I635_9EUKA)

HSP 1 Score: 121 bits (304), Expect = 4.900e-33
Identity = 54/90 (60.00%), Postives = 70/90 (77.78%), Query Frame = 1
Query:    4 LGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTARNGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHR 273
            +G+PIK+LH+AE HT+T+E+KNGE YRG LDEAED MNC L+  T T R+GRV+ L   +LRGSHV++MVLPDILK AP F+ +   A +
Sbjct:   36 IGIPIKVLHDAEGHTVTIELKNGETYRGKLDEAEDNMNCHLSNCTKTGRDGRVTTLANCFLRGSHVRFMVLPDILKNAPFFKKIDTKASK 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8391.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5C0_ECTSI2.990e-4478.41Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Ecto... [more]
A0A835ZED0_9STRA4.800e-4477.53Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Trib... [more]
A0A6S9H3G1_HETAK5.590e-4264.36Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hete... [more]
W7TQG3_9STRA4.430e-3864.71Small nuclear ribonucleoprotein Sm D3 n=2 Tax=Mono... [more]
A0A7S2S181_9STRA1.090e-3765.22Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Rhiz... [more]
A0A8J2SMY3_9STRA1.130e-3559.14Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Pela... [more]
F0Y2Z6_AURAN8.260e-3556.57Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Aure... [more]
A0A7S3B4W5_9EUKA1.190e-3459.00Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Hapt... [more]
A0A183IUE8_9BILA1.780e-3362.92Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Sobo... [more]
A0A7S0I635_9EUKA4.900e-3360.00Small nuclear ribonucleoprotein Sm D3 n=1 Tax=Phae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8391contigP-wetherbeei_contig8391:1028..1523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009034995.1
Preferred nameSMD3
PFAMsLSM
Model size306
Max annot lvl2759|Eukaryota
KEGG koko:K07442,ko:K11088,ko:K18738
KEGG Pathwayko03040,ko04139,ko05322,map03040,map04139,map05322
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000243,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000395,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006376,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0019219,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030702,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032991,GO:0034622,GO:0034641,GO:0034715,GO:0034719,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046540,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0065003,GO:0065007,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990141,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue1.35e-35
EggNOG OGsCOG1958@1|root,KOG3172@2759|Eukaryota
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein-associated protein D3
Ec32 orthologEc-14_006960.1
EC2.1.1.219,2.1.1.220
DescriptionU7 snRNA binding
Cds size306
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03032,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187037.5186412-CDS-P-wetherbeei_contig8391:1027..11601683187037.5186412-CDS-P-wetherbeei_contig8391:1027..1160Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8391 1028..1160 +
1683187037.5319407-CDS-P-wetherbeei_contig8391:1350..15231683187037.5319407-CDS-P-wetherbeei_contig8391:1350..1523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8391 1351..1523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8391.1.1prot_P-wetherbeei_contig8391.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8391 1028..1523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8391.1.1

>prot_P-wetherbeei_contig8391.1.1 ID=prot_P-wetherbeei_contig8391.1.1|Name=mRNA_P-wetherbeei_contig8391.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
ALGVPIKLLHEAESHTITVEMKNGEVYRGLLDEAEDTMNCFLTGVTMTAR
NGRVSKLEQVYLRGSHVKYMVLPDILKAAPIFQGVQKMAHRENAAAAGRG
GG
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mRNA from alignment at P-wetherbeei_contig8391:1028..1523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8391.1.1 ID=mRNA_P-wetherbeei_contig8391.1.1|Name=mRNA_P-wetherbeei_contig8391.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=496bp|location=Sequence derived from alignment at P-wetherbeei_contig8391:1028..1523+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCTGGGCGTCCCCATCAAGCTGCTGCACGAAGCGGAAAGCCACACCAT CACCGTGGAGATGAAGAACGGAGAGGTCTACCGAGGGCTGCTGGACGAGG CAGAAGACACGATGAACTGCTTCTTGACAGGCGGTGAGGCGCACAGAAAT GCAATCCTGCCTCCATCGCATTGCGTGACCGCTCTCTCCGTTCCGTCGTT AACTTTCGGCTTTTGTTATATGATACAAACAAGCTCGCGGCCTGCGCCGC CGGCGTCCCGTCAGTAACTTAGCTAATCTCCTTCCTAATCTTTCTCTCTC CCGTCCTCTGCTCGATGCGGCAGTGACAATGACGGCGCGAAACGGGCGGG TCAGCAAGCTGGAGCAGGTCTATTTGCGGGGCAGCCACGTCAAATACATG GTCCTCCCGGACATTTTGAAGGCGGCGCCAATCTTCCAGGGGGTGCAGAA AATGGCGCATCGGGAGAACGCGGCGGCGGCGGGCCGGGGCGGAGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8391:1028..1523+

>mRNA_P-wetherbeei_contig8391.1.1 ID=mRNA_P-wetherbeei_contig8391.1.1|Name=mRNA_P-wetherbeei_contig8391.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig8391:1028..1523+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCTGGGCGTCCCCATCAAGCTGCTGCACGAAGCGGAAAGCCACACCAT
CACCGTGGAGATGAAGAACGGAGAGGTCTACCGAGGGCTGCTGGACGAGG
CAGAAGACACGATGAACTGCTTCTTGACAGGCGTGACAATGACGGCGCGA
AACGGGCGGGTCAGCAAGCTGGAGCAGGTCTATTTGCGGGGCAGCCACGT
CAAATACATGGTCCTCCCGGACATTTTGAAGGCGGCGCCAATCTTCCAGG
GGGTGCAGAAAATGGCGCATCGGGAGAACGCGGCGGCGGCGGGCCGGGGC
GGAGGG
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