prot_P-wetherbeei_contig7727.1.2 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig7727.1.2
Unique Nameprot_P-wetherbeei_contig7727.1.2
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length148
Homology
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A835YSL0_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSL0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.760e-29
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 0
Query:   33 ALELVALGAVYYACRLSGRPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALG-TELLLLHRIDQWTTGLVS 147
            A+EL+ LGAVY   R    P + R M+P   +  G R+RVHLEP RY +    DW  R A++D++Y+VL KP G+ CMAHVSN  EC+H CA+ ALG  EL +LHRID+WTTGLV+
Sbjct:   11 AMELILLGAVY--AREKPHP-LIRAMEPDALVGEGWRLRVHLEPMRYLSSHMCDWQHRKAYEDEDYLVLYKPPGLPCMAHVSNKLECVHLCAAAALGYKELHMLHRIDKWTTGLVA 123          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A8J4GGA5_9CHLO (PseudoU_synth_2 domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GGA5_9CHLO)

HSP 1 Score: 108 bits (270), Expect = 9.220e-25
Identity = 61/122 (50.00%), Postives = 71/122 (58.20%), Query Frame = 0
Query:   33 ALELVALGAVYYACRLSG-------RPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLV 146
            ALEL+ LGAVY      G       R     +   A  + AG  VRVH  PKRYPAC  SDWP RV + D+EYVV+ KPAG+ CM H SN  E L  C   ALG   L + HR+DQWTTG+V
Sbjct:   94 ALELLQLGAVYVGIPQKGLDHINWVRSLELTVAPTAATVPAGNYVRVHPRPKRYPACYCSDWPSRVLFCDEEYVVVNKPAGLPCMRHESNALEELASCVGRALGMNGLEVCHRLDQWTTGIV 215          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A835W151_CHLIN (PseudoU_synth_2 domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W151_CHLIN)

HSP 1 Score: 106 bits (264), Expect = 2.840e-24
Identity = 65/152 (42.76%), Postives = 83/152 (54.61%), Query Frame = 0
Query:    3 DKARVALVTVQQPCMLLEALLGPIGLPPGTALELVALGAVYYACRLSG-------RPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLV 146
            D+  V+L+ V +  +  +A   P G     ALEL+ +GAV+   +  G       R     +   A  L  G  VRVH +PKRYPAC   DWP RV   D EYVV+ KP G+ CM H SN  E L  C  +ALG E L + HR+DQWTTG+V
Sbjct:   19 DEGGVSLLAVTEEILCTKAGGEPAGGGRARALELLQIGAVFVGSQQKGTEYINWVRSSDLPVAVTAAHLDRGHFVRVHPQPKRYPACYCKDWPSRVLHVDAEYVVVNKPPGLPCMRHESNAAEELAACVGKALGMEGLEVCHRLDQWTTGVV 170          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A7R9VBZ0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VBZ0_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 8.160e-22
Identity = 60/136 (44.12%), Postives = 73/136 (53.68%), Query Frame = 0
Query:   27 GLPPGTALELVALGAVYYACRLSGRP---KMARIMD-PA-----------QPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGT-ELLLLHRIDQWTTGLV 146
            GLPP    +LV LGAVY    + G+    K  R +D P              L  G  VRVH  PKRYPAC  +DW   +   D ++ V+ KPAGV CM HVSN RE +  CA+  LG  EL   HR+D WTTGL+
Sbjct:  230 GLPPPAVHDLVDLGAVYVGQPIKGQAGVVKWRRAIDLPGCACELSDGRCDMQLSPGTMVRVHSTPKRYPACYATDWRSALVHLDADFAVVNKPAGVPCMRHVSNAREHVTECAARGLGMPELEACHRLDVWTTGLL 365          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A8J9WNS2_9CHLO (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNS2_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 7.330e-19
Identity = 55/126 (43.65%), Postives = 75/126 (59.52%), Query Frame = 0
Query:   27 GLPPGTALELVALGAVYY----ACRLSGRPKMA-RIMDPAQ--PLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTG 144
            GL   +  EL+ LGAVYY    AC  + + + A R+ + AQ  P++ G  +RVH  PKRYPA Q  DW  RV   D +  V+ KPAG+   +H SN  E + RC  +ALG + L++LHR+D  TTG
Sbjct:   87 GLHCASVQELIDLGAVYYGDPAACDEAPKWRRANRLAEAAQDHPIQQGQWIRVHPNPKRYPAAQAVDWAARVIHLDADICVVNKPAGIPVQSHESNSVETVPRCLEKALGLDRLMMLHRLDYCTTG 212          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: I0Z561_COCSC (Pseudouridine synthase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z561_COCSC)

HSP 1 Score: 85.9 bits (211), Expect = 5.400e-17
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 0
Query:   36 LVALGAVYYA-CRLSGR-PKMARI-----MDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLV 146
            L+ LGAVYY      G+ PK  R        P  P++ G  VRVH  PKRYPA Q +DW  RV   D ++ V+ KPA +   +H SN  E + RC  +ALG E L +LHR+D  TTG++
Sbjct:   63 LIDLGAVYYGETEAPGQAPKWRRANRLAEAAPHHPIKQGQWVRVHPNPKRYPAAQTTDWAARVIHLDADFCVVNKPARIPVQSHESNSVETVPRCLVKALGLEHLWMLHRLDYCTTGVL 181          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A812J866_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812J866_9DINO)

HSP 1 Score: 82.0 bits (201), Expect = 2.080e-15
Identity = 52/127 (40.94%), Postives = 66/127 (51.97%), Query Frame = 0
Query:   35 ELVALGAVYYACRLSGR-PKMARIMDPAQP----------LRAGARVRVHLEPKRYPACQRS--DWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEAL---GTELLLLHRIDQWTTGL 145
            EL+ALGAVYY      R  +M   + P             +  G  +RVH EPKRY  C     DW +R+ +   EYVV++KPAGV C  HVSN RE L    + AL   G EL+   R+D  T+GL
Sbjct:   77 ELLALGAVYYMPPEGNRFERMGSTLHPVHSDQRHLVQETLVERGGELRVHTEPKRYHRCSAEGLDWADRLLYVSQEYVVVDKPAGVPCAPHVSNGREWLVPLVAAALSSGGEELVACQRLDVATSGL 203          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A0G4EST6_VITBC (PseudoU_synth_2 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EST6_VITBC)

HSP 1 Score: 80.9 bits (198), Expect = 5.620e-15
Identity = 54/131 (41.22%), Postives = 69/131 (52.67%), Query Frame = 0
Query:   33 ALELVALGAVYYA--------------CRLSGRPKMARIMDPAQPLRAGAR--VRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLV 146
            AL L+ LG VY +               +L    +  RI D A  ++   R  +RVHL+PKR       DWP RV    + +VVLEKP G+ C  HVSN+RECLH  A   L  + L+ LHR+D  TTGLV
Sbjct:  129 ALWLIDLGCVYISENPPADNVPAATLRAQLKSHYRRNRI-DGAISIKGNERFLIRVHLKPKRQRGVH-VDWPSRVRHSCEHFVVLEKPFGLPCQPHVSNYRECLHGAAERGLQEDNLIALHRLDIATTGLV 257          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A2J8ACD5_9CHLO (RNA pseudourine synthase 6, chloroplastic n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ACD5_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 5.040e-14
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 0
Query:   33 ALELVALGAVYYACRLSGRPKM--ARIMD-----PAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEAL 128
            ALEL+ LG+V+   +  GR  +  +R +D         + AG  VRVH  PKRYP C   DW  RV + DD+Y+V+ KPAG+ CM H SN  E +  C  +AL
Sbjct:   28 ALELLMLGSVFVGQQFKGRDHLTWSRSIDLDVAVTVAQVPAGHFVRVHPHPKRYPTCY-CDWASRVLFSDDDYIVVNKPAGLPCMRHESNAAEEVAACVGKAL 129          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A4Q6D5X0_9PROT (RluA family pseudouridine synthase (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6D5X0_9PROT)

HSP 1 Score: 71.2 bits (173), Expect = 5.990e-12
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 0
Query:   35 ELVALGAVYYACRLSGRPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTELLLLHRIDQWTTGLV 146
            EL+ LGA+Y    + G   +   MD    +R G  +RVH +P+RY   +   W ERV +QD+ ++V+ KP+G+   A V N  E L  C ++ LG E+ + HR+D  T+GL+
Sbjct:   41 ELLKLGAIY----VEGNRTITE-MD----VREGDYIRVHTKPRRY-NTELGLWQERVLFQDENFLVVNKPSGLPVHATVDNLVENLQTCLAKELGCEIFVTHRLDVPTSGLI 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSL0_9STRA6.760e-2953.45Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A8J4GGA5_9CHLO9.220e-2550.00PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A835W151_CHLIN2.840e-2442.76PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7R9VBZ0_9CHLO8.160e-2244.12Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A8J9WNS2_9CHLO7.330e-1943.65RNA pseudouridine synthase 6, chloroplastic n=1 Ta... [more]
I0Z561_COCSC5.400e-1743.70Pseudouridine synthase n=1 Tax=Coccomyxa subellips... [more]
A0A812J866_9DINO2.080e-1540.94Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A0G4EST6_VITBC5.620e-1541.22PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A2J8ACD5_9CHLO5.040e-1442.72RNA pseudourine synthase 6, chloroplastic n=1 Tax=... [more]
A0A4Q6D5X0_9PROT5.990e-1237.50RluA family pseudouridine synthase (Fragment) n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.2350.10Pseudouridine synthasecoord: 90..147
e-value: 6.9E-7
score: 31.1
NoneNo IPR availablePIRSRPIRSR606225-1PIRSR606225-1coord: 85..146
e-value: 6.8E-5
score: 20.0
NoneNo IPR availablePANTHERPTHR21600MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASEcoord: 62..146
NoneNo IPR availablePANTHERPTHR21600:SF52RNA PSEUDOURIDINE SYNTHASE 6, CHLOROPLASTICcoord: 62..146
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 85..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7727contigP-wetherbeei_contig7727:26..982 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7727.1.2mRNA_P-wetherbeei_contig7727.1.2Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig7727 2..1419 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig7727.1.2 ID=prot_P-wetherbeei_contig7727.1.2|Name=mRNA_P-wetherbeei_contig7727.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MADKARVALVTVQQPCMLLEALLGPIGLPPGTALELVALGAVYYACRLSG
RPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVV
LEKPAGVVCMAHVSNWRECLHRCASEALGTELLLLHRIDQWTTGLVS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020103PsdUridine_synth_cat_dom_sf