mRNA_P-wetherbeei_contig7727.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7727.1.2
Unique NamemRNA_P-wetherbeei_contig7727.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A835YSL0_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSL0_9STRA)

HSP 1 Score: 118 bits (295), Expect = 6.210e-27
Identity = 62/116 (53.45%), Postives = 80/116 (68.97%), Query Frame = 3
Query:  534 ALELVALGAVYYACRLSGRPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALG-TELLLLHRIDQWTTGLVS 878
            A+EL+ LGAVY   R    P + R M+P   +  G R+RVHLEP RY +    DW  R A++D++Y+VL KP G+ CMAHVSN  EC+H CA+ ALG  EL +LHRID+WTTGLV+
Sbjct:   11 AMELILLGAVY--AREKPHP-LIRAMEPDALVGEGWRLRVHLEPMRYLSSHMCDWQHRKAYEDEDYLVLYKPPGLPCMAHVSNKLECVHLCAAAALGYKELHMLHRIDKWTTGLVA 123          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A8J4GGA5_9CHLO (PseudoU_synth_2 domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GGA5_9CHLO)

HSP 1 Score: 108 bits (271), Expect = 5.290e-23
Identity = 61/122 (50.00%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  534 ALELVALGAVYYACRLSG-------RPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLV 875
            ALEL+ LGAVY      G       R     +   A  + AG  VRVH  PKRYPAC  SDWP RV + D+EYVV+ KPAG+ CM H SN  E L  C   ALG   L + HR+DQWTTG+V
Sbjct:   94 ALELLQLGAVYVGIPQKGLDHINWVRSLELTVAPTAATVPAGNYVRVHPRPKRYPACYCSDWPSRVLFCDEEYVVVNKPAGLPCMRHESNALEELASCVGRALGMNGLEVCHRLDQWTTGIV 215          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A835W151_CHLIN (PseudoU_synth_2 domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W151_CHLIN)

HSP 1 Score: 106 bits (265), Expect = 1.480e-22
Identity = 65/152 (42.76%), Postives = 83/152 (54.61%), Query Frame = 3
Query:  444 DKARVALVTVQQPCMLLEALLGPIGLPPGTALELVALGAVYYACRLSG-------RPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLV 875
            D+  V+L+ V +  +  +A   P G     ALEL+ +GAV+   +  G       R     +   A  L  G  VRVH +PKRYPAC   DWP RV   D EYVV+ KP G+ CM H SN  E L  C  +ALG E L + HR+DQWTTG+V
Sbjct:   19 DEGGVSLLAVTEEILCTKAGGEPAGGGRARALELLQIGAVFVGSQQKGTEYINWVRSSDLPVAVTAAHLDRGHFVRVHPQPKRYPACYCKDWPSRVLHVDAEYVVVNKPPGLPCMRHESNAAEELAACVGKALGMEGLEVCHRLDQWTTGVV 170          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A7R9VBZ0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VBZ0_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 4.180e-20
Identity = 60/136 (44.12%), Postives = 73/136 (53.68%), Query Frame = 3
Query:  516 GLPPGTALELVALGAVYYACRLSGRP---KMARIMD-PA-----------QPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGT-ELLLLHRIDQWTTGLV 875
            GLPP    +LV LGAVY    + G+    K  R +D P              L  G  VRVH  PKRYPAC  +DW   +   D ++ V+ KPAGV CM HVSN RE +  CA+  LG  EL   HR+D WTTGL+
Sbjct:  230 GLPPPAVHDLVDLGAVYVGQPIKGQAGVVKWRRAIDLPGCACELSDGRCDMQLSPGTMVRVHSTPKRYPACYATDWRSALVHLDADFAVVNKPAGVPCMRHVSNAREHVTECAARGLGMPELEACHRLDVWTTGLL 365          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A8J9WNS2_9CHLO (RNA pseudouridine synthase 6, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WNS2_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 2.690e-17
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = 3
Query:  516 GLPPGTALELVALGAVYY----ACRLSGRPKMA-RIMDPAQ--PLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLV 875
            GL   +  EL+ LGAVYY    AC  + + + A R+ + AQ  P++ G  +RVH  PKRYPA Q  DW  RV   D +  V+ KPAG+   +H SN  E + RC  +ALG + L++LHR+D  TTG +
Sbjct:   87 GLHCASVQELIDLGAVYYGDPAACDEAPKWRRANRLAEAAQDHPIQQGQWIRVHPNPKRYPAAQAVDWAARVIHLDADICVVNKPAGIPVQSHESNSVETVPRCLEKALGLDRLMMLHRLDYCTTGAL 214          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: I0Z561_COCSC (Pseudouridine synthase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z561_COCSC)

HSP 1 Score: 86.3 bits (212), Expect = 1.590e-15
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  543 LVALGAVYYA-CRLSGR-PKMARI-----MDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLV 875
            L+ LGAVYY      G+ PK  R        P  P++ G  VRVH  PKRYPA Q +DW  RV   D ++ V+ KPA +   +H SN  E + RC  +ALG E L +LHR+D  TTG++
Sbjct:   63 LIDLGAVYYGETEAPGQAPKWRRANRLAEAAPHHPIKQGQWVRVHPNPKRYPAAQTTDWAARVIHLDADFCVVNKPARIPVQSHESNSVETVPRCLVKALGLEHLWMLHRLDYCTTGVL 181          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A812J866_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812J866_9DINO)

HSP 1 Score: 83.2 bits (204), Expect = 3.200e-14
Identity = 59/157 (37.58%), Postives = 77/157 (49.04%), Query Frame = 3
Query:  456 VALVTVQQPCMLLEALLGPIGLPPGTAL-ELVALGAVYYACRLSGR-PKMARIMDPAQP----------LRAGARVRVHLEPKRYPACQRS--DWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEAL---GTELLLLHRIDQWTTGLV 875
            V    V Q   +  +L G +    G +L EL+ALGAVYY      R  +M   + P             +  G  +RVH EPKRY  C     DW +R+ +   EYVV++KPAGV C  HVSN RE L    + AL   G EL+   R+D  T+GL 
Sbjct:   48 VIYAAVNQTASISSSLRGLLPAWSGESLAELLALGAVYYMPPEGNRFERMGSTLHPVHSDQRHLVQETLVERGGELRVHTEPKRYHRCSAEGLDWADRLLYVSQEYVVVDKPAGVPCAPHVSNGREWLVPLVAAALSSGGEELVACQRLDVATSGLT 204          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A0G4EST6_VITBC (PseudoU_synth_2 domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EST6_VITBC)

HSP 1 Score: 82.0 bits (201), Expect = 8.750e-14
Identity = 56/136 (41.18%), Postives = 71/136 (52.21%), Query Frame = 3
Query:  534 ALELVALGAVYYA--------------CRLSGRPKMARIMDPAQPLRAGAR--VRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTE-LLLLHRIDQWTTGLVS*AGR 890
            AL L+ LG VY +               +L    +  RI D A  ++   R  +RVHL+PKR       DWP RV    + +VVLEKP G+ C  HVSN+RECLH  A   L  + L+ LHR+D  TTGLV  A R
Sbjct:  129 ALWLIDLGCVYISENPPADNVPAATLRAQLKSHYRRNRI-DGAISIKGNERFLIRVHLKPKRQRGVH-VDWPSRVRHSCEHFVVLEKPFGLPCQPHVSNYRECLHGAAERGLQEDNLIALHRLDIATTGLVCVARR 262          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A2J8ACD5_9CHLO (RNA pseudourine synthase 6, chloroplastic n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8ACD5_9CHLO)

HSP 1 Score: 77.4 bits (189), Expect = 1.470e-12
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  534 ALELVALGAVYYACRLSGRPKM--ARIMD-----PAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEAL 821
            ALEL+ LG+V+   +  GR  +  +R +D         + AG  VRVH  PKRYP C   DW  RV + DD+Y+V+ KPAG+ CM H SN  E +  C  +AL
Sbjct:   28 ALELLMLGSVFVGQQFKGRDHLTWSRSIDLDVAVTVAQVPAGHFVRVHPHPKRYPTCY-CDWASRVLFSDDDYIVVNKPAGLPCMRHESNAAEEVAACVGKAL 129          
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Match: A0A4Q6D5X0_9PROT (RluA family pseudouridine synthase (Fragment) n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6D5X0_9PROT)

HSP 1 Score: 71.6 bits (174), Expect = 9.620e-11
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  540 ELVALGAVYYACRLSGRPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVVLEKPAGVVCMAHVSNWRECLHRCASEALGTELLLLHRIDQWTTGLV 875
            EL+ LGA+Y    + G   +   MD    +R G  +RVH +P+RY   +   W ERV +QD+ ++V+ KP+G+   A V N  E L  C ++ LG E+ + HR+D  T+GL+
Sbjct:   41 ELLKLGAIY----VEGNRTITE-MD----VREGDYIRVHTKPRRY-NTELGLWQERVLFQDENFLVVNKPSGLPVHATVDNLVENLQTCLAKELGCEIFVTHRLDVPTSGLI 142          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7727.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSL0_9STRA6.210e-2753.45Pseudouridine synthase n=1 Tax=Tribonema minus Tax... [more]
A0A8J4GGA5_9CHLO5.290e-2350.00PseudoU_synth_2 domain-containing protein n=2 Tax=... [more]
A0A835W151_CHLIN1.480e-2242.76PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A7R9VBZ0_9CHLO4.180e-2044.12Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A8J9WNS2_9CHLO2.690e-1742.97RNA pseudouridine synthase 6, chloroplastic n=1 Ta... [more]
I0Z561_COCSC1.590e-1543.70Pseudouridine synthase n=1 Tax=Coccomyxa subellips... [more]
A0A812J866_9DINO3.200e-1437.58Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A0G4EST6_VITBC8.750e-1441.18PseudoU_synth_2 domain-containing protein n=1 Tax=... [more]
A0A2J8ACD5_9CHLO1.470e-1242.72RNA pseudourine synthase 6, chloroplastic n=1 Tax=... [more]
A0A4Q6D5X0_9PROT9.620e-1137.50RluA family pseudouridine synthase (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7727contigP-wetherbeei_contig7727:2..1419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3067.XP_002950010.1
PFAMsPseudoU_synth_2
Model size905
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.7e-24
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota,37QPT@33090|Viridiplantae,34INK@3041|Chlorophyta
DescriptionRNA pseudouridylate synthase
Cds size444
COG categoryA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.3133416-UTR-P-wetherbeei_contig7727:1..251683186997.3133416-UTR-P-wetherbeei_contig7727:1..25Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7727 2..25 -
1683186997.3528693-UTR-P-wetherbeei_contig7727:982..14191683186997.3528693-UTR-P-wetherbeei_contig7727:982..1419Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7727 983..1419 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186997.3251565-CDS-P-wetherbeei_contig7727:25..1781683186997.3251565-CDS-P-wetherbeei_contig7727:25..178Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7727 26..178 -
1683186997.3356295-CDS-P-wetherbeei_contig7727:443..5671683186997.3356295-CDS-P-wetherbeei_contig7727:443..567Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7727 444..567 -
1683186997.3448505-CDS-P-wetherbeei_contig7727:815..9821683186997.3448505-CDS-P-wetherbeei_contig7727:815..982Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7727 816..982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7727.1.2prot_P-wetherbeei_contig7727.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7727 26..982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7727.1.2

>prot_P-wetherbeei_contig7727.1.2 ID=prot_P-wetherbeei_contig7727.1.2|Name=mRNA_P-wetherbeei_contig7727.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MADKARVALVTVQQPCMLLEALLGPIGLPPGTALELVALGAVYYACRLSG
RPKMARIMDPAQPLRAGARVRVHLEPKRYPACQRSDWPERVAWQDDEYVV
LEKPAGVVCMAHVSNWRECLHRCASEALGTELLLLHRIDQWTTGLVS*
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mRNA from alignment at P-wetherbeei_contig7727:2..1419-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7727.1.2 ID=mRNA_P-wetherbeei_contig7727.1.2|Name=mRNA_P-wetherbeei_contig7727.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1418bp|location=Sequence derived from alignment at P-wetherbeei_contig7727:2..1419- (Phaeothamnion wetherbeei SAG_119_79)
CGTGCTCGCTCGCAAAGGCACCTCCGCGTACGCTGCTCCTTCTTTCCCTC GCACTTGATGTCGCCGTGCGAGCATCGCCTTCGACGCGACGTCGCTCAGT CCCAGCCCCTCGTTCGGCCTTTCACAGCGGCATCCAAGCACCAAGATACA GGCGAAAGGTTTCGACCCCTAGCGCTCTTGGTGCGAGCGCTTGCCCTGCG CTCACCTCGAGAGCGTTCTCAGGACGACAGCAAACGCCCTCTATCCTCGA GCAACCTGCTTTTCGACAACGGGGCTCATCCTGCCGAGTCTATGGCACCT TCTATCCTTCCCTTGCGCTGCCAGCGGCCGCAACGGCCGCAATAACAGCA GCAGTATCGGACCTTCCACCACCTCTACCTGCTACAAAGTTAGGAGCGCC TTCCGCGATCACGTCGGAGCGGACGAGAGATGCGCCCATGGCCGATAAAG CCCGCGTAGCCCTCGTGACGGTTCAGCAACCGTGCATGCTGCTGGAGGCC CTCCTCGGCCCCATCGGCCTTCCGCCGGGGACAGCACTGGAACTTGTTGC GCTCGGGGCCGTTTATTACGCCTGCCGTCTGAGCGGACGGCCAAAAATGG CCAGGTGAGAGCGACTTATTATGATGCACCGAAGCTCTGTTGGCTCAATG CCGTTGTTACCATTTTGCTTCTCAAAGATGATTTCGTTACTAAACGTTTC CTTTCAGTCGTTATACATAAATATGACAGACATTCTGCTCAGACGCGATG TATCAATGCGCAACATTGGCTCGGCGCACCACTCAGTCTCACGAATGTTT GACGTTTCGCCTCAAACCTCAAACATGCCCAACGCCTTCCCACACGAACC AGGATCATGGACCCTGCGCAGCCGCTGCGGGCGGGCGCTCGGGTGCGCGT GCACTTGGAGCCGAAGCGTTACCCGGCCTGCCAGCGCAGCGACTGGCCGG AGCGCGTAGCGTGGCAGGACGACGAGGTGAGTTGTCTTCTTCCCGCATTT TCGCCTCCATTTTCCTTGCCGACCACATTTTGTCTGTCCTCTGTAGACTG TGCTGTTGCAGCGTTTCTTCTTTGCTACTTTACGCCGGTGCTTTTCCTTT GGCGACGACAATGGACTGGACAGGCTATGAGAGTCGAAAGACAAGAGGAA AGAAACGCACCGACGAGGTTTGAAAATGGTAGCTTCCCCGCCTTCCTCTT TCTCTCCTTCATTAAAACCGGCCGGCCGTCTTGGCGCGCAGTACGTGGTG CTGGAGAAGCCGGCCGGGGTGGTGTGCATGGCGCATGTCTCCAACTGGCG CGAGTGCCTCCACCGCTGCGCCTCCGAGGCGCTTGGCACGGAGCTGCTGC TGCTCCACCGCATCGACCAGTGGACCACCGGCCTGGTGAGTTGAGCTGGG CGCTGGTCGAGGCGCCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig7727:2..1419-

>mRNA_P-wetherbeei_contig7727.1.2 ID=mRNA_P-wetherbeei_contig7727.1.2|Name=mRNA_P-wetherbeei_contig7727.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig7727:2..1419- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGATAAAGCCCGCGTAGCCCTCGTGACGGTTCAGCAACCGTGCAT
GCTGCTGGAGGCCCTCCTCGGCCCCATCGGCCTTCCGCCGGGGACAGCAC
TGGAACTTGTTGCGCTCGGGGCCGTTTATTACGCCTGCCGTCTGAGCGGA
CGGCCAAAAATGGCCAGGATCATGGACCCTGCGCAGCCGCTGCGGGCGGG
CGCTCGGGTGCGCGTGCACTTGGAGCCGAAGCGTTACCCGGCCTGCCAGC
GCAGCGACTGGCCGGAGCGCGTAGCGTGGCAGGACGACGAGTACGTGGTG
CTGGAGAAGCCGGCCGGGGTGGTGTGCATGGCGCATGTCTCCAACTGGCG
CGAGTGCCTCCACCGCTGCGCCTCCGAGGCGCTTGGCACGGAGCTGCTGC
TGCTCCACCGCATCGACCAGTGGACCACCGGCCTGGTGAGTTGA
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