prot_P-wetherbeei_contig7538.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig7538.2.1
Unique Name	prot_P-wetherbeei_contig7538.2.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	240

Homology

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BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: D8LBD3_ECTSI (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD3_ECTSI)

HSP 1 Score: 310 bits (795), Expect = 3.320e-105
Identity = 146/180 (81.11%), Postives = 166/180 (92.22%), Query Frame = 0

Query:   60 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDLL 239
            MRPLTD+ETKVLFEKLANYIGK+IEQLINR  E  CFRLHKDRVYYVSERL+RQ+T+++RD LLS GTCFGKFT+S KFRLHIT LD+++QYAK+KVWV+P+AEMSFLYGNHV K+GL R++E TP+YGG VVYSM DVPLGFGVAAQPTE+CKDLDPTA VVLHQADVGEYLR+EDDLL
Sbjct:    1 MRPLTDDETKVLFEKLANYIGKNIEQLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRDTLLSLGTCFGKFTKSGKFRLHITALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDLL 180

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BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: A0A835ZB99_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB99_9STRA)

HSP 1 Score: 302 bits (774), Expect = 5.400e-102
Identity = 140/178 (78.65%), Postives = 160/178 (89.89%), Query Frame = 0

Query:   60 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDD 237
            MRPLTDEET  LFEKLANYIGK IE+LINR  E +CFRLHKDRVYYVSERL+RQSTN++RD+LLS GTCFGKFT++ KFRL ITCLD+++QYAKHKVWV+P AEMSFLYGNHV K+GLAR++E TPQY GVVVYSM D+P+GFGVAAQ TEYC+DLD  A VVLHQAD+GEYLR+EDD
Sbjct:    1 MRPLTDEETATLFEKLANYIGKDIEKLINRPDEAYCFRLHKDRVYYVSERLMRQSTNVSRDNLLSLGTCFGKFTKTKKFRLGITCLDYISQYAKHKVWVKPGAEMSFLYGNHVAKSGLARITEATPQYAGVVVYSMNDIPMGFGVAAQATEYCRDLDAAAVVVLHQADIGEYLRVEDD 178

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BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: A0A7S2S5A9_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5A9_9STRA)

HSP 1 Score: 271 bits (692), Expect = 1.620e-89
Identity = 126/180 (70.00%), Postives = 157/180 (87.22%), Query Frame = 0

Query:   60 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 238
            MRPLT++ETK+LF+KLA YIGKSIEQ+INR  E HCFRL KDRVYYVSE  ++ S +I+RD++L FGTC GKF++S KFRLH+T LD+L+QYAK+KVWV+P+AEMSFLYGN++ K+GLAR++E TPQY GVVVY+M D+PLGFGV+AQ TE CKDL+P   VVLHQAD+GEYLR +EDD+
Sbjct:    1 MRPLTEDETKLLFQKLAEYIGKSIEQMINRKDERHCFRLMKDRVYYVSESAMKYSASISRDNILHFGTCLGKFSKSGKFRLHVTALDYLSQYAKYKVWVKPSAEMSFLYGNNILKSGLARITESTPQYAGVVVYNMSDLPLGFGVSAQNTEACKDLEPMGNVVLHQADIGEYLRGVEDDM 180

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BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: A0A812WVB5_SYMMI (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WVB5_SYMMI)

HSP 1 Score: 270 bits (689), Expect = 4.620e-89
Identity = 122/179 (68.16%), Postives = 155/179 (86.59%), Query Frame = 0

Query:   60 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDL 238
            MRPLTDEE +V FEKL +YIG ++ +LI+RS EP+ FRL KDRV+Y+SE  ++ + NI R+ L+S GTCFGKFT+++KFRLH++CLD++AQYAK+KVWV+  AEMSFLYGN+V KAGLAR+++G PQYGGVVV+SM D+PLGFGVAAQPTEYCKDL+P A VVLHQ D+GEYLR+ED +
Sbjct:    1 MRPLTDEEMRVFFEKLQSYIGTNVTKLIDRSDEPYTFRLIKDRVFYISENQMKLAGNIGREHLISLGTCFGKFTKNNKFRLHVSCLDYIAQYAKYKVWVKTGAEMSFLYGNNVNKAGLARITDGIPQYGGVVVFSMSDIPLGFGVAAQPTEYCKDLEPMANVVLHQGDIGEYLRVEDGM 179

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BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: B8BPY5_THAPS (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPY5_THAPS)

HSP 1 Score: 268 bits (685), Expect = 1.880e-88
Identity = 126/180 (70.00%), Postives = 159/180 (88.33%), Query Frame = 0

Query:   60 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 238
            MRPLT+EETK LF+KLA Y+G+S+E+LINRS E HCFRL KDRVYY+SE +++ ST+I +D+LL  GTC GKFT+S KFRLHIT LD+LAQY+K+KVW++ +AEMSFLYGN+V K+GLAR++EGTPQY GVVVY++ D+PLGFGVAAQ T+ CK+LDPTA VVLHQADVGE+LR +E+D+
Sbjct:    1 MRPLTEEETKTLFQKLAEYMGRSVERLINRSDERHCFRLIKDRVYYISESVMKASTSINKDNLLHCGTCLGKFTKSGKFRLHITALDYLAQYSKYKVWLKQSAEMSFLYGNNVIKSGLARITEGTPQYAGVVVYNLSDIPLGFGVAAQTTDACKELDPTANVVLHQADVGEFLRGLEEDM 180

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BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: B5Y3S4_PHATC (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3S4_PHATC)

HSP 1 Score: 268 bits (685), Expect = 1.880e-88
Identity = 126/180 (70.00%), Postives = 154/180 (85.56%), Query Frame = 0

Query:   60 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 238
            MRPLT+EETK LF KL+ YIGK+IE+LINRS E HCFRL KDR YY+SE +++ +T+I R+ LL  GTC GKFT++ KFRLHIT L++++QYAK+KVWV+P+AEMSFLYGNHV K GLARM+E TPQY GVVVYSM D+PLGFGVAAQ TE+C+ LDPT  VVLHQAD+GEYLR +E+D+
Sbjct:    1 MRPLTEEETKSLFLKLSEYIGKNIERLINRSDERHCFRLIKDRCYYISESIMKSATSIGREHLLHVGTCMGKFTKTGKFRLHITALEYISQYAKYKVWVKPSAEMSFLYGNHVSKNGLARMTENTPQYSGVVVYSMSDIPLGFGVAAQSTEHCQQLDPTGNVVLHQADIGEYLRGLEEDM 180

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BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: A0A7S3PW11_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW11_9STRA)

HSP 1 Score: 268 bits (684), Expect = 2.750e-88
Identity = 127/181 (70.17%), Postives = 160/181 (88.40%), Query Frame = 0

Query:   60 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLH-KDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 238
            MRPLT++ETK+LF+KLA YIG+SIE++INRS E HCFRL  K+RVYYVSE +++ S ++ARD+LLSFGTC GKFT+S KFRLHIT LD+L+QYA++KVWV+P+AEMSFLYGN+V K+GLAR++E TPQY G+VVYSM D+PLGFGVA+Q T+ CKDL+P   VVLHQAD+GEYLR +EDD+
Sbjct:    1 MRPLTEDETKLLFQKLAEYIGRSIEKMINRSDERHCFRLAAKNRVYYVSESVMKASNSVARDNLLSFGTCLGKFTKSGKFRLHITALDYLSQYAQYKVWVKPSAEMSFLYGNNVLKSGLARITESTPQYAGIVVYSMSDIPLGFGVASQGTDACKDLEPMGNVVLHQADIGEYLRGMEDDI 181

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BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog n=13 Tax=Sarcopterygii TaxID=8287 RepID=NIP7_XENTR)

HSP 1 Score: 265 bits (678), Expect = 2.100e-87
Identity = 123/179 (68.72%), Postives = 150/179 (83.80%), Query Frame = 0

Query:   60 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDL 238
            MRPLTDEETK +FEKL+ YIG++I+ L++R    +CFRLH DRVYYVSER+++ +TNIARD L+S GTCFGKFT++HKFRLH+T LD+LA YAK+KVWV+P AE SFLYGNHV K+GL R++E T QY GVVVYSM D+PLGFGVAA+ T+ C+ LDP A VV HQADVGEY+R ED L
Sbjct:    1 MRPLTDEETKAMFEKLSKYIGENIKLLVDRPDGTYCFRLHNDRVYYVSERILKLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEYIRHEDTL 179

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BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: K0TGR2_THAOC (PUA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGR2_THAOC)

HSP 1 Score: 271 bits (693), Expect = 6.920e-87
Identity = 128/180 (71.11%), Postives = 159/180 (88.33%), Query Frame = 0

Query:   60 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 238
            MRPLT+EETK LF+KLA Y+G+SIE+LINRS E HCFRL KDRVYY+SE +++ ST+I +D+LL  GTC GKFT+S KFRLH+T LD+LAQY+K+KVW++P+AEMSFLYGN+V K+GLAR++E TPQY GVVVY++ D+PLGFGVAAQ TE CK+LDPTA VVLHQADVGE+LR +EDD+
Sbjct:  198 MRPLTEEETKTLFQKLAEYMGRSIERLINRSDERHCFRLIKDRVYYISESVMKASTSINKDNLLHCGTCLGKFTKSGKFRLHVTALDYLAQYSKYKVWLKPSAEMSFLYGNNVIKSGLARITESTPQYAGVVVYNLADIPLGFGVAAQTTEACKELDPTANVVLHQADVGEFLRGLEDDV 377

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BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: K3X3X4_GLOUD (60S ribosome subunit biogenesis protein NIP7 homolog n=13 Tax=Oomycota TaxID=4762 RepID=K3X3X4_GLOUD)

HSP 1 Score: 263 bits (673), Expect = 1.210e-86
Identity = 120/179 (67.04%), Postives = 151/179 (84.36%), Query Frame = 0

Query:   60 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDL 238
            MRPLTDEE K +FEK++ YIG++++ L+ R  E +CFRLH + VYY SE+L+RQSTNI  D+LLS GT  GK T++ KF L IT LD+LAQYAK+KVW++PN+EMSFLYGN+V K+GL R++EGTPQY GVVVYSM D+PLGFG+AAQ TE CKDL+PTA VVLHQAD+GEYLR+ED++
Sbjct:    1 MRPLTDEELKTVFEKISKYIGRNVQHLVTRPDEKYCFRLHGNIVYYCSEKLMRQSTNIGTDELLSIGTAVGKLTKTKKFHLRITFLDYLAQYAKYKVWIKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVVVYSMNDIPLGFGIAAQATELCKDLEPTAYVVLHQADIGEYLRVEDEM 179

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LBD3_ECTSI	3.320e-105	81.11	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
A0A835ZB99_9STRA	5.400e-102	78.65	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
A0A7S2S5A9_9STRA	1.620e-89	70.00	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
A0A812WVB5_SYMMI	4.620e-89	68.16	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
B8BPY5_THAPS	1.880e-88	70.00	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
B5Y3S4_PHATC	1.880e-88	70.00	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
A0A7S3PW11_9STRA	2.750e-88	70.17	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
NIP7_XENTR	2.100e-87	68.72	60S ribosome subunit biogenesis protein NIP7 homol...	[more]
K0TGR2_THAOC	6.920e-87	71.11	PUA domain-containing protein n=1 Tax=Thalassiosir...	[more]
K3X3X4_GLOUD	1.210e-86	67.04	60S ribosome subunit biogenesis protein NIP7 homol...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002478	PUA domain	SMART	SM00359	pua_5	coord: 154..229 e-value: 1.1E-7 score: 41.5
IPR036974	PUA domain superfamily	GENE3D	2.30.130.10	PUA domain	coord: 153..239 e-value: 2.9E-37 score: 128.4
IPR040598	UPF0113, pre-PUA domain	PFAM	PF17833	UPF0113_N	coord: 61..142 e-value: 4.8E-30 score: 103.8
IPR005155	UPF0113, PUA domain	PFAM	PF03657	UPF0113	coord: 155..233 e-value: 8.5E-22 score: 77.2
None	No IPR available	GENE3D	3.10.450.220		coord: 60..152 e-value: 1.3E-41 score: 142.5
None	No IPR available	PANTHER	PTHR23415	CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7	coord: 59..238
None	No IPR available	PANTHER	PTHR23415:SF4	60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOG	coord: 59..238
None	No IPR available	PROSITE	PS50890	PUA	coord: 153..229 score: 11.68239
None	No IPR available	SUPERFAMILY	88802	Pre-PUA domain	coord: 60..153
IPR015947	PUA-like superfamily	SUPERFAMILY	88697	PUA domain-like	coord: 154..229

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig7538	contig	P-wetherbeei_contig7538:494..1636 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig7538.2.1	mRNA_P-wetherbeei_contig7538.2.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig7538 444..1665 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig7538.2.1 ID=prot_P-wetherbeei_contig7538.2.1|Name=mRNA_P-wetherbeei_contig7538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp
MGKGVSCNCFASQTLPEQFLAARRDHTNNKQQVEGKHLVCACIFNLNAQS
GKVNHQYHTMRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHK
DRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQ
YAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPL
GFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDLL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002478	PUA
IPR036974	PUA_sf
IPR040598	UPF0113_N
IPR005155	UPF0113_PUA
IPR015947	PUA-like_sf