mRNA_P-wetherbeei_contig7538.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: D8LBD3_ECTSI (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD3_ECTSI) HSP 1 Score: 310 bits (793), Expect = 1.730e-104 Identity = 146/180 (81.11%), Postives = 166/180 (92.22%), Query Frame = 3
Query: 228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDLL 767
MRPLTD+ETKVLFEKLANYIGK+IEQLINR E CFRLHKDRVYYVSERL+RQ+T+++RD LLS GTCFGKFT+S KFRLHIT LD+++QYAK+KVWV+P+AEMSFLYGNHV K+GL R++E TP+YGG VVYSM DVPLGFGVAAQPTE+CKDLDPTA VVLHQADVGEYLR+EDDLL
Sbjct: 1 MRPLTDDETKVLFEKLANYIGKNIEQLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRDTLLSLGTCFGKFTKSGKFRLHITALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDLL 180
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: A0A835ZB99_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB99_9STRA) HSP 1 Score: 301 bits (772), Expect = 2.810e-101 Identity = 140/178 (78.65%), Postives = 160/178 (89.89%), Query Frame = 3
Query: 228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDD 761
MRPLTDEET LFEKLANYIGK IE+LINR E +CFRLHKDRVYYVSERL+RQSTN++RD+LLS GTCFGKFT++ KFRL ITCLD+++QYAKHKVWV+P AEMSFLYGNHV K+GLAR++E TPQY GVVVYSM D+P+GFGVAAQ TEYC+DLD A VVLHQAD+GEYLR+EDD
Sbjct: 1 MRPLTDEETATLFEKLANYIGKDIEKLINRPDEAYCFRLHKDRVYYVSERLMRQSTNVSRDNLLSLGTCFGKFTKTKKFRLGITCLDYISQYAKHKVWVKPGAEMSFLYGNHVAKSGLARITEATPQYAGVVVYSMNDIPMGFGVAAQATEYCRDLDAAAVVVLHQADIGEYLRVEDD 178
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: A0A7S2S5A9_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5A9_9STRA) HSP 1 Score: 270 bits (690), Expect = 8.250e-89 Identity = 126/180 (70.00%), Postives = 157/180 (87.22%), Query Frame = 3
Query: 228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 764
MRPLT++ETK+LF+KLA YIGKSIEQ+INR E HCFRL KDRVYYVSE ++ S +I+RD++L FGTC GKF++S KFRLH+T LD+L+QYAK+KVWV+P+AEMSFLYGN++ K+GLAR++E TPQY GVVVY+M D+PLGFGV+AQ TE CKDL+P VVLHQAD+GEYLR +EDD+
Sbjct: 1 MRPLTEDETKLLFQKLAEYIGKSIEQMINRKDERHCFRLMKDRVYYVSESAMKYSASISRDNILHFGTCLGKFSKSGKFRLHVTALDYLSQYAKYKVWVKPSAEMSFLYGNNILKSGLARITESTPQYAGVVVYNMSDLPLGFGVSAQNTEACKDLEPMGNVVLHQADIGEYLRGVEDDM 180
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: A0A812WVB5_SYMMI (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WVB5_SYMMI) HSP 1 Score: 269 bits (687), Expect = 2.360e-88 Identity = 122/179 (68.16%), Postives = 155/179 (86.59%), Query Frame = 3
Query: 228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDL 764
MRPLTDEE +V FEKL +YIG ++ +LI+RS EP+ FRL KDRV+Y+SE ++ + NI R+ L+S GTCFGKFT+++KFRLH++CLD++AQYAK+KVWV+ AEMSFLYGN+V KAGLAR+++G PQYGGVVV+SM D+PLGFGVAAQPTEYCKDL+P A VVLHQ D+GEYLR+ED +
Sbjct: 1 MRPLTDEEMRVFFEKLQSYIGTNVTKLIDRSDEPYTFRLIKDRVFYISENQMKLAGNIGREHLISLGTCFGKFTKNNKFRLHVSCLDYIAQYAKYKVWVKTGAEMSFLYGNNVNKAGLARITDGIPQYGGVVVFSMSDIPLGFGVAAQPTEYCKDLEPMANVVLHQGDIGEYLRVEDGM 179
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: B8BPY5_THAPS (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPY5_THAPS) HSP 1 Score: 267 bits (683), Expect = 9.550e-88 Identity = 126/180 (70.00%), Postives = 159/180 (88.33%), Query Frame = 3
Query: 228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 764
MRPLT+EETK LF+KLA Y+G+S+E+LINRS E HCFRL KDRVYY+SE +++ ST+I +D+LL GTC GKFT+S KFRLHIT LD+LAQY+K+KVW++ +AEMSFLYGN+V K+GLAR++EGTPQY GVVVY++ D+PLGFGVAAQ T+ CK+LDPTA VVLHQADVGE+LR +E+D+
Sbjct: 1 MRPLTEEETKTLFQKLAEYMGRSVERLINRSDERHCFRLIKDRVYYISESVMKASTSINKDNLLHCGTCLGKFTKSGKFRLHITALDYLAQYSKYKVWLKQSAEMSFLYGNNVIKSGLARITEGTPQYAGVVVYNLSDIPLGFGVAAQTTDACKELDPTANVVLHQADVGEFLRGLEEDM 180
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: B5Y3S4_PHATC (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3S4_PHATC) HSP 1 Score: 267 bits (683), Expect = 9.550e-88 Identity = 126/180 (70.00%), Postives = 154/180 (85.56%), Query Frame = 3
Query: 228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 764
MRPLT+EETK LF KL+ YIGK+IE+LINRS E HCFRL KDR YY+SE +++ +T+I R+ LL GTC GKFT++ KFRLHIT L++++QYAK+KVWV+P+AEMSFLYGNHV K GLARM+E TPQY GVVVYSM D+PLGFGVAAQ TE+C+ LDPT VVLHQAD+GEYLR +E+D+
Sbjct: 1 MRPLTEEETKSLFLKLSEYIGKNIERLINRSDERHCFRLIKDRCYYISESIMKSATSIGREHLLHVGTCMGKFTKTGKFRLHITALEYISQYAKYKVWVKPSAEMSFLYGNHVSKNGLARMTENTPQYSGVVVYSMSDIPLGFGVAAQSTEHCQQLDPTGNVVLHQADIGEYLRGLEEDM 180
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: A0A7S3PW11_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW11_9STRA) HSP 1 Score: 267 bits (682), Expect = 1.400e-87 Identity = 127/181 (70.17%), Postives = 160/181 (88.40%), Query Frame = 3
Query: 228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLH-KDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 764
MRPLT++ETK+LF+KLA YIG+SIE++INRS E HCFRL K+RVYYVSE +++ S ++ARD+LLSFGTC GKFT+S KFRLHIT LD+L+QYA++KVWV+P+AEMSFLYGN+V K+GLAR++E TPQY G+VVYSM D+PLGFGVA+Q T+ CKDL+P VVLHQAD+GEYLR +EDD+
Sbjct: 1 MRPLTEDETKLLFQKLAEYIGRSIEKMINRSDERHCFRLAAKNRVYYVSESVMKASNSVARDNLLSFGTCLGKFTKSGKFRLHITALDYLSQYAQYKVWVKPSAEMSFLYGNNVLKSGLARITESTPQYAGIVVYSMSDIPLGFGVASQGTDACKDLEPMGNVVLHQADIGEYLRGMEDDI 181
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog n=13 Tax=Sarcopterygii TaxID=8287 RepID=NIP7_XENTR) HSP 1 Score: 265 bits (676), Expect = 1.070e-86 Identity = 123/179 (68.72%), Postives = 150/179 (83.80%), Query Frame = 3
Query: 228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDL 764
MRPLTDEETK +FEKL+ YIG++I+ L++R +CFRLH DRVYYVSER+++ +TNIARD L+S GTCFGKFT++HKFRLH+T LD+LA YAK+KVWV+P AE SFLYGNHV K+GL R++E T QY GVVVYSM D+PLGFGVAA+ T+ C+ LDP A VV HQADVGEY+R ED L
Sbjct: 1 MRPLTDEETKAMFEKLSKYIGENIKLLVDRPDGTYCFRLHNDRVYYVSERILKLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEYIRHEDTL 179
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: K0TGR2_THAOC (PUA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGR2_THAOC) HSP 1 Score: 270 bits (691), Expect = 3.520e-86 Identity = 128/180 (71.11%), Postives = 159/180 (88.33%), Query Frame = 3
Query: 228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 764
MRPLT+EETK LF+KLA Y+G+SIE+LINRS E HCFRL KDRVYY+SE +++ ST+I +D+LL GTC GKFT+S KFRLH+T LD+LAQY+K+KVW++P+AEMSFLYGN+V K+GLAR++E TPQY GVVVY++ D+PLGFGVAAQ TE CK+LDPTA VVLHQADVGE+LR +EDD+
Sbjct: 198 MRPLTEEETKTLFQKLAEYMGRSIERLINRSDERHCFRLIKDRVYYISESVMKASTSINKDNLLHCGTCLGKFTKSGKFRLHVTALDYLAQYSKYKVWLKPSAEMSFLYGNNVIKSGLARITESTPQYAGVVVYNLADIPLGFGVAAQTTEACKELDPTANVVLHQADVGEFLRGLEDDV 377
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: K3X3X4_GLOUD (60S ribosome subunit biogenesis protein NIP7 homolog n=13 Tax=Oomycota TaxID=4762 RepID=K3X3X4_GLOUD) HSP 1 Score: 263 bits (671), Expect = 6.140e-86 Identity = 120/179 (67.04%), Postives = 151/179 (84.36%), Query Frame = 3
Query: 228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDL 764
MRPLTDEE K +FEK++ YIG++++ L+ R E +CFRLH + VYY SE+L+RQSTNI D+LLS GT GK T++ KF L IT LD+LAQYAK+KVW++PN+EMSFLYGN+V K+GL R++EGTPQY GVVVYSM D+PLGFG+AAQ TE CKDL+PTA VVLHQAD+GEYLR+ED++
Sbjct: 1 MRPLTDEELKTVFEKISKYIGRNVQHLVTRPDEKYCFRLHGNIVYYCSEKLMRQSTNIGTDELLSIGTAVGKLTKTKKFHLRITFLDYLAQYAKYKVWIKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVVVYSMNDIPLGFGIAAQATELCKDLEPTAYVVLHQADIGEYLRVEDEM 179 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig7538.2.1 >prot_P-wetherbeei_contig7538.2.1 ID=prot_P-wetherbeei_contig7538.2.1|Name=mRNA_P-wetherbeei_contig7538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp MGKGVSCNCFASQTLPEQFLAARRDHTNNKQQVEGKHLVCACIFNLNAQSback to top mRNA from alignment at P-wetherbeei_contig7538:444..1665+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig7538.2.1 ID=mRNA_P-wetherbeei_contig7538.2.1|Name=mRNA_P-wetherbeei_contig7538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1222bp|location=Sequence derived from alignment at P-wetherbeei_contig7538:444..1665+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig7538:444..1665+ >mRNA_P-wetherbeei_contig7538.2.1 ID=mRNA_P-wetherbeei_contig7538.2.1|Name=mRNA_P-wetherbeei_contig7538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig7538:444..1665+ (Phaeothamnion wetherbeei SAG_119_79)back to top |