mRNA_P-wetherbeei_contig7538.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig7538.2.1
Unique NamemRNA_P-wetherbeei_contig7538.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: D8LBD3_ECTSI (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBD3_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 1.730e-104
Identity = 146/180 (81.11%), Postives = 166/180 (92.22%), Query Frame = 3
Query:  228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDLL 767
            MRPLTD+ETKVLFEKLANYIGK+IEQLINR  E  CFRLHKDRVYYVSERL+RQ+T+++RD LLS GTCFGKFT+S KFRLHIT LD+++QYAK+KVWV+P+AEMSFLYGNHV K+GL R++E TP+YGG VVYSM DVPLGFGVAAQPTE+CKDLDPTA VVLHQADVGEYLR+EDDLL
Sbjct:    1 MRPLTDDETKVLFEKLANYIGKNIEQLINRPDEKCCFRLHKDRVYYVSERLMRQATSVSRDTLLSLGTCFGKFTKSGKFRLHITALDYISQYAKYKVWVKPSAEMSFLYGNHVQKSGLGRITENTPKYGGAVVYSMSDVPLGFGVAAQPTEFCKDLDPTAVVVLHQADVGEYLRVEDDLL 180          
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: A0A835ZB99_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB99_9STRA)

HSP 1 Score: 301 bits (772), Expect = 2.810e-101
Identity = 140/178 (78.65%), Postives = 160/178 (89.89%), Query Frame = 3
Query:  228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDD 761
            MRPLTDEET  LFEKLANYIGK IE+LINR  E +CFRLHKDRVYYVSERL+RQSTN++RD+LLS GTCFGKFT++ KFRL ITCLD+++QYAKHKVWV+P AEMSFLYGNHV K+GLAR++E TPQY GVVVYSM D+P+GFGVAAQ TEYC+DLD  A VVLHQAD+GEYLR+EDD
Sbjct:    1 MRPLTDEETATLFEKLANYIGKDIEKLINRPDEAYCFRLHKDRVYYVSERLMRQSTNVSRDNLLSLGTCFGKFTKTKKFRLGITCLDYISQYAKHKVWVKPGAEMSFLYGNHVAKSGLARITEATPQYAGVVVYSMNDIPMGFGVAAQATEYCRDLDAAAVVVLHQADIGEYLRVEDD 178          
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: A0A7S2S5A9_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5A9_9STRA)

HSP 1 Score: 270 bits (690), Expect = 8.250e-89
Identity = 126/180 (70.00%), Postives = 157/180 (87.22%), Query Frame = 3
Query:  228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 764
            MRPLT++ETK+LF+KLA YIGKSIEQ+INR  E HCFRL KDRVYYVSE  ++ S +I+RD++L FGTC GKF++S KFRLH+T LD+L+QYAK+KVWV+P+AEMSFLYGN++ K+GLAR++E TPQY GVVVY+M D+PLGFGV+AQ TE CKDL+P   VVLHQAD+GEYLR +EDD+
Sbjct:    1 MRPLTEDETKLLFQKLAEYIGKSIEQMINRKDERHCFRLMKDRVYYVSESAMKYSASISRDNILHFGTCLGKFSKSGKFRLHVTALDYLSQYAKYKVWVKPSAEMSFLYGNNILKSGLARITESTPQYAGVVVYNMSDLPLGFGVSAQNTEACKDLEPMGNVVLHQADIGEYLRGVEDDM 180          
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: A0A812WVB5_SYMMI (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812WVB5_SYMMI)

HSP 1 Score: 269 bits (687), Expect = 2.360e-88
Identity = 122/179 (68.16%), Postives = 155/179 (86.59%), Query Frame = 3
Query:  228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDL 764
            MRPLTDEE +V FEKL +YIG ++ +LI+RS EP+ FRL KDRV+Y+SE  ++ + NI R+ L+S GTCFGKFT+++KFRLH++CLD++AQYAK+KVWV+  AEMSFLYGN+V KAGLAR+++G PQYGGVVV+SM D+PLGFGVAAQPTEYCKDL+P A VVLHQ D+GEYLR+ED +
Sbjct:    1 MRPLTDEEMRVFFEKLQSYIGTNVTKLIDRSDEPYTFRLIKDRVFYISENQMKLAGNIGREHLISLGTCFGKFTKNNKFRLHVSCLDYIAQYAKYKVWVKTGAEMSFLYGNNVNKAGLARITDGIPQYGGVVVFSMSDIPLGFGVAAQPTEYCKDLEPMANVVLHQGDIGEYLRVEDGM 179          
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: B8BPY5_THAPS (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BPY5_THAPS)

HSP 1 Score: 267 bits (683), Expect = 9.550e-88
Identity = 126/180 (70.00%), Postives = 159/180 (88.33%), Query Frame = 3
Query:  228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 764
            MRPLT+EETK LF+KLA Y+G+S+E+LINRS E HCFRL KDRVYY+SE +++ ST+I +D+LL  GTC GKFT+S KFRLHIT LD+LAQY+K+KVW++ +AEMSFLYGN+V K+GLAR++EGTPQY GVVVY++ D+PLGFGVAAQ T+ CK+LDPTA VVLHQADVGE+LR +E+D+
Sbjct:    1 MRPLTEEETKTLFQKLAEYMGRSVERLINRSDERHCFRLIKDRVYYISESVMKASTSINKDNLLHCGTCLGKFTKSGKFRLHITALDYLAQYSKYKVWLKQSAEMSFLYGNNVIKSGLARITEGTPQYAGVVVYNLSDIPLGFGVAAQTTDACKELDPTANVVLHQADVGEFLRGLEEDM 180          
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: B5Y3S4_PHATC (60S ribosome subunit biogenesis protein NIP7 homolog n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3S4_PHATC)

HSP 1 Score: 267 bits (683), Expect = 9.550e-88
Identity = 126/180 (70.00%), Postives = 154/180 (85.56%), Query Frame = 3
Query:  228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 764
            MRPLT+EETK LF KL+ YIGK+IE+LINRS E HCFRL KDR YY+SE +++ +T+I R+ LL  GTC GKFT++ KFRLHIT L++++QYAK+KVWV+P+AEMSFLYGNHV K GLARM+E TPQY GVVVYSM D+PLGFGVAAQ TE+C+ LDPT  VVLHQAD+GEYLR +E+D+
Sbjct:    1 MRPLTEEETKSLFLKLSEYIGKNIERLINRSDERHCFRLIKDRCYYISESIMKSATSIGREHLLHVGTCMGKFTKTGKFRLHITALEYISQYAKYKVWVKPSAEMSFLYGNHVSKNGLARMTENTPQYSGVVVYSMSDIPLGFGVAAQSTEHCQQLDPTGNVVLHQADIGEYLRGLEEDM 180          
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: A0A7S3PW11_9STRA (60S ribosome subunit biogenesis protein NIP7 homolog n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PW11_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.400e-87
Identity = 127/181 (70.17%), Postives = 160/181 (88.40%), Query Frame = 3
Query:  228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLH-KDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 764
            MRPLT++ETK+LF+KLA YIG+SIE++INRS E HCFRL  K+RVYYVSE +++ S ++ARD+LLSFGTC GKFT+S KFRLHIT LD+L+QYA++KVWV+P+AEMSFLYGN+V K+GLAR++E TPQY G+VVYSM D+PLGFGVA+Q T+ CKDL+P   VVLHQAD+GEYLR +EDD+
Sbjct:    1 MRPLTEDETKLLFQKLAEYIGRSIEKMINRSDERHCFRLAAKNRVYYVSESVMKASNSVARDNLLSFGTCLGKFTKSGKFRLHITALDYLSQYAQYKVWVKPSAEMSFLYGNNVLKSGLARITESTPQYAGIVVYSMSDIPLGFGVASQGTDACKDLEPMGNVVLHQADIGEYLRGMEDDI 181          
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog n=13 Tax=Sarcopterygii TaxID=8287 RepID=NIP7_XENTR)

HSP 1 Score: 265 bits (676), Expect = 1.070e-86
Identity = 123/179 (68.72%), Postives = 150/179 (83.80%), Query Frame = 3
Query:  228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDL 764
            MRPLTDEETK +FEKL+ YIG++I+ L++R    +CFRLH DRVYYVSER+++ +TNIARD L+S GTCFGKFT++HKFRLH+T LD+LA YAK+KVWV+P AE SFLYGNHV K+GL R++E T QY GVVVYSM D+PLGFGVAA+ T+ C+ LDP A VV HQADVGEY+R ED L
Sbjct:    1 MRPLTDEETKAMFEKLSKYIGENIKLLVDRPDGTYCFRLHNDRVYYVSERILKLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVGEYIRHEDTL 179          
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: K0TGR2_THAOC (PUA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGR2_THAOC)

HSP 1 Score: 270 bits (691), Expect = 3.520e-86
Identity = 128/180 (71.11%), Postives = 159/180 (88.33%), Query Frame = 3
Query:  228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLR-IEDDL 764
            MRPLT+EETK LF+KLA Y+G+SIE+LINRS E HCFRL KDRVYY+SE +++ ST+I +D+LL  GTC GKFT+S KFRLH+T LD+LAQY+K+KVW++P+AEMSFLYGN+V K+GLAR++E TPQY GVVVY++ D+PLGFGVAAQ TE CK+LDPTA VVLHQADVGE+LR +EDD+
Sbjct:  198 MRPLTEEETKTLFQKLAEYMGRSIERLINRSDERHCFRLIKDRVYYISESVMKASTSINKDNLLHCGTCLGKFTKSGKFRLHVTALDYLAQYSKYKVWLKPSAEMSFLYGNNVIKSGLARITESTPQYAGVVVYNLADIPLGFGVAAQTTEACKELDPTANVVLHQADVGEFLRGLEDDV 377          
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Match: K3X3X4_GLOUD (60S ribosome subunit biogenesis protein NIP7 homolog n=13 Tax=Oomycota TaxID=4762 RepID=K3X3X4_GLOUD)

HSP 1 Score: 263 bits (671), Expect = 6.140e-86
Identity = 120/179 (67.04%), Postives = 151/179 (84.36%), Query Frame = 3
Query:  228 MRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHKDRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQYAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPLGFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDL 764
            MRPLTDEE K +FEK++ YIG++++ L+ R  E +CFRLH + VYY SE+L+RQSTNI  D+LLS GT  GK T++ KF L IT LD+LAQYAK+KVW++PN+EMSFLYGN+V K+GL R++EGTPQY GVVVYSM D+PLGFG+AAQ TE CKDL+PTA VVLHQAD+GEYLR+ED++
Sbjct:    1 MRPLTDEELKTVFEKISKYIGRNVQHLVTRPDEKYCFRLHGNIVYYCSEKLMRQSTNIGTDELLSIGTAVGKLTKTKKFHLRITFLDYLAQYAKYKVWIKPNSEMSFLYGNNVVKSGLGRITEGTPQYAGVVVYSMNDIPLGFGIAAQATELCKDLEPTAYVVLHQADIGEYLRVEDEM 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig7538.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBD3_ECTSI1.730e-10481.1160S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A835ZB99_9STRA2.810e-10178.6560S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A7S2S5A9_9STRA8.250e-8970.0060S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A812WVB5_SYMMI2.360e-8868.1660S ribosome subunit biogenesis protein NIP7 homol... [more]
B8BPY5_THAPS9.550e-8870.0060S ribosome subunit biogenesis protein NIP7 homol... [more]
B5Y3S4_PHATC9.550e-8870.0060S ribosome subunit biogenesis protein NIP7 homol... [more]
A0A7S3PW11_9STRA1.400e-8770.1760S ribosome subunit biogenesis protein NIP7 homol... [more]
NIP7_XENTR1.070e-8668.7260S ribosome subunit biogenesis protein NIP7 homol... [more]
K0TGR2_THAOC3.520e-8671.11PUA domain-containing protein n=1 Tax=Thalassiosir... [more]
K3X3X4_GLOUD6.140e-8667.0460S ribosome subunit biogenesis protein NIP7 homol... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig7538contigP-wetherbeei_contig7538:444..1665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBD3
Preferred nameNIP7
PFAMsUPF0113
Model size799
Max annot lvl2759|Eukaryota
KEGG koko:K07565
Hectar predicted targeting categoryother localisation
GOsGO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016072,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902626,GO:1990904
Exons2
Evalue5.44e-106
EggNOG OGsCOG1374@1|root,KOG3492@2759|Eukaryota
Ec32 ortholog descriptionRibosome biogenesis factor, NIP7
Ec32 orthologEc-27_004360.1
Descriptionribosome assembly
Cds size720
COG categoryJ
BRITEko00000,ko03009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.964569-UTR-P-wetherbeei_contig7538:443..4931683186986.964569-UTR-P-wetherbeei_contig7538:443..493Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7538 444..493 +
1683186986.9924362-UTR-P-wetherbeei_contig7538:1636..16651683186986.9924362-UTR-P-wetherbeei_contig7538:1636..1665Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig7538 1637..1665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186986.9753294-CDS-P-wetherbeei_contig7538:493..9521683186986.9753294-CDS-P-wetherbeei_contig7538:493..952Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7538 494..952 +
1683186986.9838126-CDS-P-wetherbeei_contig7538:1375..16361683186986.9838126-CDS-P-wetherbeei_contig7538:1375..1636Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig7538 1376..1636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig7538.2.1prot_P-wetherbeei_contig7538.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig7538 494..1636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig7538.2.1

>prot_P-wetherbeei_contig7538.2.1 ID=prot_P-wetherbeei_contig7538.2.1|Name=mRNA_P-wetherbeei_contig7538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=240bp
MGKGVSCNCFASQTLPEQFLAARRDHTNNKQQVEGKHLVCACIFNLNAQS
GKVNHQYHTMRPLTDEETKVLFEKLANYIGKSIEQLINRSGEPHCFRLHK
DRVYYVSERLIRQSTNIARDDLLSFGTCFGKFTRSHKFRLHITCLDFLAQ
YAKHKVWVRPNAEMSFLYGNHVPKAGLARMSEGTPQYGGVVVYSMGDVPL
GFGVAAQPTEYCKDLDPTATVVLHQADVGEYLRIEDDLL*
back to top

mRNA from alignment at P-wetherbeei_contig7538:444..1665+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig7538.2.1 ID=mRNA_P-wetherbeei_contig7538.2.1|Name=mRNA_P-wetherbeei_contig7538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1222bp|location=Sequence derived from alignment at P-wetherbeei_contig7538:444..1665+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGACTCGACTAAGGGCCTGGGTTGGGGCTGTTCAGTCATTTTGCAGCA ATGGGAAAAGGGGTGTCGTGCAATTGTTTTGCATCCCAGACCCTTCCAGA ACAGTTTCTTGCCGCGCGTCGGGACCACACAAACAACAAACAACAGGTGG AGGGGAAACACCTCGTCTGCGCTTGCATATTCAACTTAAACGCACAAAGT GGGAAGGTCAACCACCAATATCACACCATGCGGCCGCTGACTGACGAGGA GACGAAGGTCCTGTTCGAAAAGCTTGCAAACTACATCGGGAAGAGCATCG AGCAACTCATCAACCGATCAGGCGAACCACACTGCTTCCGCCTACACAAG GACCGCGTATACTACGTCAGCGAGAGACTAATTAGACAGTCCACAAACAT CGCGCGCGACGACCTGCTGTCGTTCGGCACTTGCTTTGGCAAATTCACGC GGAGCCACAAGTTTCGATTGCACATCACGTGTCTTGACTTCTTGGCGCAG TACGCAAAGGTGAGACAGGGACAGGATGTTCGTTTGCCCCTCATTTGAGA GGGATTGCCCGCTCGATTGATTTTCGACTTTGTTTTCCAAGCATTTCATT ACTATCCTGGAACGTGAAGGTCATGGGACCTTGAAGACCGTTTATGGCCA GACGAAATATTAAGAAGTTCATCAGAATGGCCTTCTTGCTGCATGATAGA ATTCTCTTCAATATGTCACCATAGCCACCTGCCCTGCCGCCTCTCCTCGC CACAAACGCTCGTTACATTGAGTTTCGGCCCGTTTCCCACTGCTGTTCGT AATTATCGACGCCGCCGCGGCTGTCGCCGTCCGCTGTTCCCGCGAATGTT ACTTCTGTCACATCGGCAATCTGCGCAACTGCGGAAATGACGAACCTACC CCTGCTCTCGCCGAACGAAACACCGAACACAGCACAAGGTGTGGGTGCGC CCAAACGCCGAAATGTCCTTCCTCTACGGCAATCACGTGCCCAAGGCCGG GCTGGCGCGCATGTCGGAGGGCACGCCGCAGTATGGCGGCGTCGTGGTCT ACTCGATGGGCGACGTGCCTTTGGGCTTCGGTGTCGCGGCGCAGCCGACC GAGTATTGCAAGGACCTGGACCCGACAGCGACGGTGGTGCTGCACCAGGC GGACGTGGGGGAGTACCTGCGGATAGAGGATGACTTGTTGTGAAAAGAGG TAAAATACAAGAAAAGGGAAAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig7538:444..1665+

>mRNA_P-wetherbeei_contig7538.2.1 ID=mRNA_P-wetherbeei_contig7538.2.1|Name=mRNA_P-wetherbeei_contig7538.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=720bp|location=Sequence derived from alignment at P-wetherbeei_contig7538:444..1665+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAAAAGGGGTGTCGTGCAATTGTTTTGCATCCCAGACCCTTCCAGA
ACAGTTTCTTGCCGCGCGTCGGGACCACACAAACAACAAACAACAGGTGG
AGGGGAAACACCTCGTCTGCGCTTGCATATTCAACTTAAACGCACAAAGT
GGGAAGGTCAACCACCAATATCACACCATGCGGCCGCTGACTGACGAGGA
GACGAAGGTCCTGTTCGAAAAGCTTGCAAACTACATCGGGAAGAGCATCG
AGCAACTCATCAACCGATCAGGCGAACCACACTGCTTCCGCCTACACAAG
GACCGCGTATACTACGTCAGCGAGAGACTAATTAGACAGTCCACAAACAT
CGCGCGCGACGACCTGCTGTCGTTCGGCACTTGCTTTGGCAAATTCACGC
GGAGCCACAAGTTTCGATTGCACATCACGTGTCTTGACTTCTTGGCGCAG
TACGCAAAGCACAAGGTGTGGGTGCGCCCAAACGCCGAAATGTCCTTCCT
CTACGGCAATCACGTGCCCAAGGCCGGGCTGGCGCGCATGTCGGAGGGCA
CGCCGCAGTATGGCGGCGTCGTGGTCTACTCGATGGGCGACGTGCCTTTG
GGCTTCGGTGTCGCGGCGCAGCCGACCGAGTATTGCAAGGACCTGGACCC
GACAGCGACGGTGGTGCTGCACCAGGCGGACGTGGGGGAGTACCTGCGGA
TAGAGGATGACTTGTTGTGA
back to top