prot_P-wetherbeei_contig5660.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig5660.2.1
Unique Nameprot_P-wetherbeei_contig5660.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length118
Homology
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: D8LNC5_ECTSI (Nuclear nucleic acid-binding protein C1D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC5_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 5.590e-31
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 0
Query:    6 SLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRKLVVDREAGRRFIENALAG 118
            SL+NF+RAL H+R  +RP+  +SREEV  CVS  + A LN+ VAYG+SSLFYM+LKTQGV+P+ HPV+ EL RI+ Y  RL    GK  P +QR L VD++A RRFI  AL+G
Sbjct:   13 SLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNV-GK--PPEQRTLKVDQDASRRFINAALSG 122          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: A0A8J4PQY2_9MYCE (Nuclear nucleic acid-binding protein C1D n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PQY2_9MYCE)

HSP 1 Score: 93.6 bits (231), Expect = 5.100e-22
Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = 0
Query:    4 QASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRKLVVDREAGRRFIENALA 117
            Q  + NF+  L  +  +L P  ++S +E    ++P ESAKLN+ VAY L+SLF+MYL+TQGV+P +H V+NEL RI+ Y+ +L +   K    ++ K+ +D +A +R I+N LA
Sbjct:   11 QQDITNFENILDKLEGQLDPFFKVSLKEHQEKLTPVESAKLNITVAYALNSLFFMYLQTQGVSPHDHQVKNELERIKPYILKLKSMTNKT--EEKPKMQIDSDAAKRMIDNTLA 122          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: A0A151ZD21_9MYCE (Nuclear nucleic acid-binding protein C1D n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZD21_9MYCE)

HSP 1 Score: 87.8 bits (216), Expect = 8.180e-20
Identity = 45/115 (39.13%), Postives = 74/115 (64.35%), Query Frame = 0
Query:    4 QASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQR-KLVVDREAGRRFIENALA 117
            Q  + NF+  L  +  +L P  R+  +E +  +SP++S+KLNV VAY L++LF+MYL+TQG++P EHPV++EL RI+ Y  +L     K    +++ K+ V+ +A  R I + +A
Sbjct:   11 QQDISNFESILDKLETQLEPFFRIPLKEHLEKLSPNDSSKLNVTVAYALNALFFMYLQTQGISPHEHPVKSELERIKPYFLKLRNLSNKSTEEEEKPKVQVNVDATSRIINHVVA 125          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: A0A835ZH36_9STRA (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH36_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.460e-19
Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 0
Query:    5 ASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRKLVVDREAGRRFIENALAG 118
            A L N  +AL ++++KLRP+   +REE+ + V+  E AKLN A+AYG+SSL+YM L+T+G    +H V+ EL RI+  + RL      +    QR +VV+  A +RFI++ LAG
Sbjct:   23 APLTNLHKALHNLKSKLRPLTETTREELASQVTKQEMAKLNAAMAYGISSLYYMLLRTKGCDTTDHGVKKELDRIKGAMGRLQ-----MVKVPQRGIVVNVAAAQRFIKHGLAG 131          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: R1DEY4_EMIHU (Nuclear nucleic acid-binding protein C1D n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEY4_EMIHU)

HSP 1 Score: 87.4 bits (215), Expect = 1.960e-19
Identity = 47/114 (41.23%), Postives = 75/114 (65.79%), Query Frame = 0
Query:    5 ASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRKLVVDREAGRRFIENALAG 118
            +++ NF+R L  I  ++R + R    E+   + P ESA+L++ VAY +++LFYMYLKTQG+  A HPV  EL RI+ Y++++ AA  + A + QR+  ++  A +RFI +AL G
Sbjct:   21 SAVANFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVRAA-SQEAEASQRQASLNASAAKRFIVHALGG 133          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: A0A7S3W1R2_EMIHU (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W1R2_EMIHU)

HSP 1 Score: 87.4 bits (215), Expect = 2.440e-19
Identity = 47/114 (41.23%), Postives = 75/114 (65.79%), Query Frame = 0
Query:    5 ASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRKLVVDREAGRRFIENALAG 118
            +++ NF+R L  I  ++R + R    E+   + P ESA+L++ VAY +++LFYMYLKTQG+  A HPV  EL RI+ Y++++ AA  + A + QR+  ++  A +RFI +AL G
Sbjct:   27 SAVANFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVRAA-SQEAEASQRQASLNASAAKRFIVHALGG 139          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: L8HHM1_ACACA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHM1_ACACA)

HSP 1 Score: 86.7 bits (213), Expect = 5.100e-19
Identity = 42/114 (36.84%), Postives = 77/114 (67.54%), Query Frame = 0
Query:    4 QASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNA-AQGKVAPSDQRKLVVDREAGRRFIENAL 116
            Q ++   ++A++ +   +    + S +E+   +S  + A+L+V +AY L++LFY+YLKTQGV PA+HPV++E+ R++EY+++L    Q K  PS    +V+D++A  RFI++A+
Sbjct:   14 QTTISTLEKAVSDVEKHIESYLKTSVDEITNDLSTEDGARLSVLLAYALNTLFYIYLKTQGVDPADHPVKDEIERVKEYIQKLKQLTQPKETPS----MVLDKQAANRFIQHAV 123          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: A0A7S4U7T0_GUITH (Nuclear nucleic acid-binding protein C1D n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4U7T0_GUITH)

HSP 1 Score: 85.5 bits (210), Expect = 2.250e-18
Identity = 43/117 (36.75%), Postives = 72/117 (61.54%), Query Frame = 0
Query:    2 ANQASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRKLVVDREAGRRFIENALAG 118
            A + +L+  D AL ++   L P+     + + AC+ P + AKLN+ +AY + SLF++YLKTQG+A  EH V  EL R++ Y+ +L  A      +++ KL ++++A  RFI+  L+G
Sbjct:   37 AMEENLDKIDSALDNLETALEPILATPWDTLNACLEPVQRAKLNLMIAYTIDSLFFLYLKTQGIATEEHQVNEELARVKSYMSKLKDATA-AQENEKSKLKLNKDAAARFIKAGLSG 152          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: A0A7S4C1H3_CHRCT (Nuclear nucleic acid-binding protein C1D n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C1H3_CHRCT)

HSP 1 Score: 84.7 bits (208), Expect = 2.420e-17
Identity = 46/117 (39.32%), Postives = 78/117 (66.67%), Query Frame = 0
Query:    5 ASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLN--AAQGKVAPSDQ-RKLVVDREAGRRFIENALAG 118
            A++ +F  A+  I  K++ + +    E+   +SP ESA+L++ VAY +++LFYMYLKTQG+  + HPVR EL R++ Y++++   + + + A  DQ R+L ++  A +RFI +ALAG
Sbjct:   23 AAVSSFGAAVNEIEEKVKLLLQAPWHELCRGLSPLESARLHLMVAYTVNTLFYMYLKTQGIPASNHPVREELERVKNYIRKVKEVSQEAEKASEDQKRQLKLNESAAQRFILHALAG 139          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: F1A131_DICPU (Nuclear nucleic acid-binding protein C1D n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A131_DICPU)

HSP 1 Score: 78.6 bits (192), Expect = 2.020e-16
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 0
Query:    4 QASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRL 86
            Q  + NF+  L  + ++L    ++  +E    +SP ESAKLN+ +AY L+SLF+MYL+TQGV+P +H V+ EL RI+ YV++L
Sbjct:   10 QQDINNFENVLDKLESQLESFFKVPLKEHQQSLSPIESAKLNITIAYALNSLFFMYLQTQGVSPHDHQVKTELDRIKPYVQKL 92          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC5_ECTSI5.590e-3157.52Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
A0A8J4PQY2_9MYCE5.100e-2242.11Nuclear nucleic acid-binding protein C1D n=1 Tax=P... [more]
A0A151ZD21_9MYCE8.180e-2039.13Nuclear nucleic acid-binding protein C1D n=1 Tax=T... [more]
A0A835ZH36_9STRA1.460e-1942.98Nuclear nucleic acid-binding protein C1D (Fragment... [more]
R1DEY4_EMIHU1.960e-1941.23Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
A0A7S3W1R2_EMIHU2.440e-1941.23Nuclear nucleic acid-binding protein C1D (Fragment... [more]
L8HHM1_ACACA5.100e-1936.84Nuclear nucleic acid-binding protein C1D n=1 Tax=A... [more]
A0A7S4U7T0_GUITH2.250e-1836.75Nuclear nucleic acid-binding protein C1D n=1 Tax=G... [more]
A0A7S4C1H3_CHRCT2.420e-1739.32Nuclear nucleic acid-binding protein C1D n=1 Tax=C... [more]
F1A131_DICPU2.020e-1644.58Nuclear nucleic acid-binding protein C1D n=1 Tax=D... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007146Sas10/Utp3/C1DPFAMPF04000Sas10_Utp3coord: 7..85
e-value: 7.8E-12
score: 45.6
IPR011082Exosome-associated factor Rrp47/DNA strand repair C1DPANTHERPTHR15341SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSORcoord: 5..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5660contigP-wetherbeei_contig5660:2837..3190 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5660.2.1mRNA_P-wetherbeei_contig5660.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig5660 2837..3190 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig5660.2.1 ID=prot_P-wetherbeei_contig5660.2.1|Name=mRNA_P-wetherbeei_contig5660.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
MANQASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAY
GLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRK
LVVDREAGRRFIENALAG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
IPR011082Exosome-assoc_fac/DNA_repair