mRNA_P-wetherbeei_contig5660.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5660.2.1
Unique NamemRNA_P-wetherbeei_contig5660.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: D8LNC5_ECTSI (Nuclear nucleic acid-binding protein C1D n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC5_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 5.590e-31
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 1
Query:   16 SLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRKLVVDREAGRRFIENALAG 354
            SL+NF+RAL H+R  +RP+  +SREEV  CVS  + A LN+ VAYG+SSLFYM+LKTQGV+P+ HPV+ EL RI+ Y  RL    GK  P +QR L VD++A RRFI  AL+G
Sbjct:   13 SLKNFERALGHVRNSVRPLTLMSREEVGGCVSAKDRATLNLQVAYGVSSLFYMFLKTQGVSPSTHPVKGELDRIRGYFGRLKNV-GK--PPEQRTLKVDQDASRRFINAALSG 122          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: A0A8J4PQY2_9MYCE (Nuclear nucleic acid-binding protein C1D n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PQY2_9MYCE)

HSP 1 Score: 93.6 bits (231), Expect = 5.100e-22
Identity = 48/114 (42.11%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   10 QASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRKLVVDREAGRRFIENALA 351
            Q  + NF+  L  +  +L P  ++S +E    ++P ESAKLN+ VAY L+SLF+MYL+TQGV+P +H V+NEL RI+ Y+ +L +   K    ++ K+ +D +A +R I+N LA
Sbjct:   11 QQDITNFENILDKLEGQLDPFFKVSLKEHQEKLTPVESAKLNITVAYALNSLFFMYLQTQGVSPHDHQVKNELERIKPYILKLKSMTNKT--EEKPKMQIDSDAAKRMIDNTLA 122          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: A0A151ZD21_9MYCE (Nuclear nucleic acid-binding protein C1D n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZD21_9MYCE)

HSP 1 Score: 87.8 bits (216), Expect = 8.180e-20
Identity = 45/115 (39.13%), Postives = 74/115 (64.35%), Query Frame = 1
Query:   10 QASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQR-KLVVDREAGRRFIENALA 351
            Q  + NF+  L  +  +L P  R+  +E +  +SP++S+KLNV VAY L++LF+MYL+TQG++P EHPV++EL RI+ Y  +L     K    +++ K+ V+ +A  R I + +A
Sbjct:   11 QQDISNFESILDKLETQLEPFFRIPLKEHLEKLSPNDSSKLNVTVAYALNALFFMYLQTQGISPHEHPVKSELERIKPYFLKLRNLSNKSTEEEEKPKVQVNVDATSRIINHVVA 125          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: A0A835ZH36_9STRA (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH36_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.460e-19
Identity = 49/114 (42.98%), Postives = 74/114 (64.91%), Query Frame = 1
Query:   13 ASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRKLVVDREAGRRFIENALAG 354
            A L N  +AL ++++KLRP+   +REE+ + V+  E AKLN A+AYG+SSL+YM L+T+G    +H V+ EL RI+  + RL      +    QR +VV+  A +RFI++ LAG
Sbjct:   23 APLTNLHKALHNLKSKLRPLTETTREELASQVTKQEMAKLNAAMAYGISSLYYMLLRTKGCDTTDHGVKKELDRIKGAMGRLQ-----MVKVPQRGIVVNVAAAQRFIKHGLAG 131          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: R1DEY4_EMIHU (Nuclear nucleic acid-binding protein C1D n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DEY4_EMIHU)

HSP 1 Score: 87.4 bits (215), Expect = 1.960e-19
Identity = 47/114 (41.23%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   13 ASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRKLVVDREAGRRFIENALAG 354
            +++ NF+R L  I  ++R + R    E+   + P ESA+L++ VAY +++LFYMYLKTQG+  A HPV  EL RI+ Y++++ AA  + A + QR+  ++  A +RFI +AL G
Sbjct:   21 SAVANFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVRAA-SQEAEASQRQASLNASAAKRFIVHALGG 133          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: A0A7S3W1R2_EMIHU (Nuclear nucleic acid-binding protein C1D (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3W1R2_EMIHU)

HSP 1 Score: 87.4 bits (215), Expect = 2.440e-19
Identity = 47/114 (41.23%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   13 ASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRKLVVDREAGRRFIENALAG 354
            +++ NF+R L  I  ++R + R    E+   + P ESA+L++ VAY +++LFYMYLKTQG+  A HPV  EL RI+ Y++++ AA  + A + QR+  ++  A +RFI +AL G
Sbjct:   27 SAVANFERGLGDIEERVRRLQRAPWAELCGGLPPLESARLHLMVAYTINTLFYMYLKTQGIPSANHPVLAELERIKGYIRKVRAA-SQEAEASQRQASLNASAAKRFIVHALGG 139          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: L8HHM1_ACACA (Nuclear nucleic acid-binding protein C1D n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HHM1_ACACA)

HSP 1 Score: 86.7 bits (213), Expect = 5.100e-19
Identity = 42/114 (36.84%), Postives = 77/114 (67.54%), Query Frame = 1
Query:   10 QASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNA-AQGKVAPSDQRKLVVDREAGRRFIENAL 348
            Q ++   ++A++ +   +    + S +E+   +S  + A+L+V +AY L++LFY+YLKTQGV PA+HPV++E+ R++EY+++L    Q K  PS    +V+D++A  RFI++A+
Sbjct:   14 QTTISTLEKAVSDVEKHIESYLKTSVDEITNDLSTEDGARLSVLLAYALNTLFYIYLKTQGVDPADHPVKDEIERVKEYIQKLKQLTQPKETPS----MVLDKQAANRFIQHAV 123          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: A0A7S4U7T0_GUITH (Nuclear nucleic acid-binding protein C1D n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4U7T0_GUITH)

HSP 1 Score: 85.5 bits (210), Expect = 2.250e-18
Identity = 43/117 (36.75%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    4 ANQASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRKLVVDREAGRRFIENALAG 354
            A + +L+  D AL ++   L P+     + + AC+ P + AKLN+ +AY + SLF++YLKTQG+A  EH V  EL R++ Y+ +L  A      +++ KL ++++A  RFI+  L+G
Sbjct:   37 AMEENLDKIDSALDNLETALEPILATPWDTLNACLEPVQRAKLNLMIAYTIDSLFFLYLKTQGIATEEHQVNEELARVKSYMSKLKDATA-AQENEKSKLKLNKDAAARFIKAGLSG 152          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: A0A7S4C1H3_CHRCT (Nuclear nucleic acid-binding protein C1D n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C1H3_CHRCT)

HSP 1 Score: 84.7 bits (208), Expect = 2.420e-17
Identity = 46/117 (39.32%), Postives = 78/117 (66.67%), Query Frame = 1
Query:   13 ASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLN--AAQGKVAPSDQ-RKLVVDREAGRRFIENALAG 354
            A++ +F  A+  I  K++ + +    E+   +SP ESA+L++ VAY +++LFYMYLKTQG+  + HPVR EL R++ Y++++   + + + A  DQ R+L ++  A +RFI +ALAG
Sbjct:   23 AAVSSFGAAVNEIEEKVKLLLQAPWHELCRGLSPLESARLHLMVAYTVNTLFYMYLKTQGIPASNHPVREELERVKNYIRKVKEVSQEAEKASEDQKRQLKLNESAAQRFILHALAG 139          
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Match: F1A131_DICPU (Nuclear nucleic acid-binding protein C1D n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A131_DICPU)

HSP 1 Score: 78.6 bits (192), Expect = 2.020e-16
Identity = 37/83 (44.58%), Postives = 57/83 (68.67%), Query Frame = 1
Query:   10 QASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAYGLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRL 258
            Q  + NF+  L  + ++L    ++  +E    +SP ESAKLN+ +AY L+SLF+MYL+TQGV+P +H V+ EL RI+ YV++L
Sbjct:   10 QQDINNFENVLDKLESQLESFFKVPLKEHQQSLSPIESAKLNITIAYALNSLFFMYLQTQGVSPHDHQVKTELDRIKPYVQKL 92          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5660.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC5_ECTSI5.590e-3157.52Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
A0A8J4PQY2_9MYCE5.100e-2242.11Nuclear nucleic acid-binding protein C1D n=1 Tax=P... [more]
A0A151ZD21_9MYCE8.180e-2039.13Nuclear nucleic acid-binding protein C1D n=1 Tax=T... [more]
A0A835ZH36_9STRA1.460e-1942.98Nuclear nucleic acid-binding protein C1D (Fragment... [more]
R1DEY4_EMIHU1.960e-1941.23Nuclear nucleic acid-binding protein C1D n=1 Tax=E... [more]
A0A7S3W1R2_EMIHU2.440e-1941.23Nuclear nucleic acid-binding protein C1D (Fragment... [more]
L8HHM1_ACACA5.100e-1936.84Nuclear nucleic acid-binding protein C1D n=1 Tax=A... [more]
A0A7S4U7T0_GUITH2.250e-1836.75Nuclear nucleic acid-binding protein C1D n=1 Tax=G... [more]
A0A7S4C1H3_CHRCT2.420e-1739.32Nuclear nucleic acid-binding protein C1D n=1 Tax=C... [more]
F1A131_DICPU2.020e-1644.58Nuclear nucleic acid-binding protein C1D n=1 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5660contigP-wetherbeei_contig5660:2837..3190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LNC5
Preferred nameC1D
PFAMsSas10_Utp3
Model size354
Max annot lvl2759|Eukaryota
KEGG koko:K12592
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000176,GO:0000178,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0000972,GO:0000973,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003712,GO:0003714,GO:0003723,GO:0003725,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006996,GO:0008134,GO:0008150,GO:0008152,GO:0008298,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016922,GO:0017053,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0030234,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032069,GO:0032991,GO:0033036,GO:0034470,GO:0034472,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035257,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051252,GO:0051253,GO:0051276,GO:0051336,GO:0051427,GO:0051641,GO:0060255,GO:0060700,GO:0065007,GO:0065009,GO:0070013,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071033,GO:0071034,GO:0071035,GO:0071038,GO:0071039,GO:0071042,GO:0071043,GO:0071046,GO:0071047,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0098772,GO:0140110,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901917,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905354,GO:1905777,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue9.16e-32
EggNOG OGsKOG4835@1|root,KOG4835@2759|Eukaryota
Ec32 ortholog descriptionExosome-associated factor Rrp47/DNA strand repair C1D
Ec32 orthologEc-04_004370.1
Descriptionmaturation of 5.8S rRNA
Cds size354
COG categoryH
BRITEko00000,ko00001,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186841.222529-CDS-P-wetherbeei_contig5660:2836..31901683186841.222529-CDS-P-wetherbeei_contig5660:2836..3190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5660 2837..3190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5660.2.1prot_P-wetherbeei_contig5660.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5660 2837..3190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5660.2.1

>prot_P-wetherbeei_contig5660.2.1 ID=prot_P-wetherbeei_contig5660.2.1|Name=mRNA_P-wetherbeei_contig5660.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
MANQASLENFDRALTHIRAKLRPMARLSREEVIACVSPHESAKLNVAVAY
GLSSLFYMYLKTQGVAPAEHPVRNELGRIQEYVKRLNAAQGKVAPSDQRK
LVVDREAGRRFIENALAG
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mRNA from alignment at P-wetherbeei_contig5660:2837..3190+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5660.2.1 ID=mRNA_P-wetherbeei_contig5660.2.1|Name=mRNA_P-wetherbeei_contig5660.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig5660:2837..3190+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAATCAAGCGTCCCTGGAGAACTTTGACAGAGCATTAACGCATAT TCGCGCGAAGCTGCGGCCGATGGCGCGCCTCAGCCGCGAAGAGGTCATCG CCTGCGTCTCGCCGCACGAATCAGCCAAGCTGAACGTGGCCGTGGCGTAC GGGCTCAGCAGCCTATTCTACATGTATTTGAAGACGCAGGGCGTCGCTCC GGCGGAGCATCCCGTACGGAACGAGCTGGGCCGCATTCAGGAGTACGTAA AAAGGTTGAATGCGGCTCAGGGAAAGGTCGCGCCGTCGGATCAACGAAAG CTTGTGGTGGACCGCGAGGCCGGCCGGCGCTTCATCGAAAACGCCTTGGC CGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5660:2837..3190+

>mRNA_P-wetherbeei_contig5660.2.1 ID=mRNA_P-wetherbeei_contig5660.2.1|Name=mRNA_P-wetherbeei_contig5660.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig5660:2837..3190+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAATCAAGCGTCCCTGGAGAACTTTGACAGAGCATTAACGCATAT
TCGCGCGAAGCTGCGGCCGATGGCGCGCCTCAGCCGCGAAGAGGTCATCG
CCTGCGTCTCGCCGCACGAATCAGCCAAGCTGAACGTGGCCGTGGCGTAC
GGGCTCAGCAGCCTATTCTACATGTATTTGAAGACGCAGGGCGTCGCTCC
GGCGGAGCATCCCGTACGGAACGAGCTGGGCCGCATTCAGGAGTACGTAA
AAAGGTTGAATGCGGCTCAGGGAAAGGTCGCGCCGTCGGATCAACGAAAG
CTTGTGGTGGACCGCGAGGCCGGCCGGCGCTTCATCGAAAACGCCTTGGC
CGGC
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