prot_P-wetherbeei_contig5619.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig5619.1.1
Unique Nameprot_P-wetherbeei_contig5619.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length290
Homology
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BLAST of mRNA_P-wetherbeei_contig5619.1.1 vs. uniprot
Match: A0A835GIR8_SPOEX (F-box domain-containing protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835GIR8_SPOEX)

HSP 1 Score: 58.5 bits (140), Expect = 4.920e-6
Identity = 55/197 (27.92%), Postives = 87/197 (44.16%), Query Frame = 0 
Query:   18 VCKRVSRIGHDASK--TLDLHNKPVTEKQLATLLQR-------------FHHVEALDLSFCRKLHSSVGAPGPPLQLCVKTLQDLSLRGVGVDDTTLSYVGRLTQLRRLDVSQSQLDASEKVTDAGILALSGLRELTYLSVAWNKNVTDEAVAAAVGSMP-RLAFLDASLCQLVGGETTTALVAQCPALEELLVEAC 198
            VCKR  R+  D +    +DL NK +++  L  ++ R                ++ LDLS C    S++      L  C   L+ LSL  + V+D+TLS +GR T L  L+++     A    T+       G   L  L++ W   +++E +   V   P RL  L+    + +  +    LV +CP L EL V  C
Sbjct:  233 VCKRWYRVACDETLWVRMDLGNKTISKDALGRIMSRKPIGDWTPAAPPSASRLQYLDLSMCSISPSTLDT----LLACCPNLKKLSLESLPVEDSTLSIIGRCTNLETLNLTM----ACGLKTEGFKALFEGCTSLLALNLGWC-GISEECLQVLVEKAPQRLQRLNLGGIRTLNDDILERLVNRCPRLLELDVSDC 420
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5619.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835GIR8_SPOEX4.920e-627.92F-box domain-containing protein n=1 Tax=Spodoptera... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 136..160
e-value: 73.0
score: 7.8
coord: 105..135
e-value: 85.0
score: 7.3
coord: 224..249
e-value: 13.0
score: 13.7
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 138..155
e-value: 1.8
score: 8.9
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10Ribonuclease Inhibitorcoord: 3..265
e-value: 9.7E-33
score: 115.5
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 80..242
NoneNo IPR availablePANTHERPTHR13382:SF7F-BOX AND LEUCINE-RICH REPEAT PROTEIN 17coord: 80..242
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 31..253

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5619contigP-wetherbeei_contig5619:271..1562 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5619.1.1mRNA_P-wetherbeei_contig5619.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig5619 99..1592 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig5619.1.1 ID=prot_P-wetherbeei_contig5619.1.1|Name=mRNA_P-wetherbeei_contig5619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=290bp
MFSGFLDTVAVVSKLTRVCKRVSRIGHDASKTLDLHNKPVTEKQLATLLQ
RFHHVEALDLSFCRKLHSSVGAPGPPLQLCVKTLQDLSLRGVGVDDTTLS
YVGRLTQLRRLDVSQSQLDASEKVTDAGILALSGLRELTYLSVAWNKNVT
DEAVAAAVGSMPRLAFLDASLCQLVGGETTTALVAQCPALEELLVEACPK
MDRVCLSPLAAEGQEGCGGRRGGAAKLRSLKLRHCERVTSAALTVLCDVP
SLRVSFFAAFPIIECRFAIWKWNFLTAILCRPAFLVLNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf