mRNA_P-wetherbeei_contig5619.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5619.1.1
Unique NamemRNA_P-wetherbeei_contig5619.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5619.1.1 vs. uniprot
Match: A0A4D9D5V9_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5V9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.170e-24
Identity = 78/226 (34.51%), Postives = 116/226 (51.33%), Query Frame = 1 
Query:    4 LPDNALADVMFSGFLDTVAVVSKLTRVCKRVSRIGHDASKTLDLHNKP-VTEKQLATLLQRFHHVEALDLSFCRKLHSSVGAPGPPLQLCVKTLQDLSLRGVGVDDTTLSYVGRLTQLRRLDVSQSQLDASEKVTDAGILALSGLRELTYLSVAWNKNVTDEAVAAAVGSMP---RLAFLDASLCQLVGGETTTALVAQCPALEELLVEACPKMDRVCLSPLAAEG 669
            LP +  A V++SG+ ++V V++ L+ V K    +       LDL   P + +  L+ +  RF  V +LDLSFC  +  SV      L  C  TL  +SLRG GV D  L  + R T+L  +DVS+ + + S  +TD G+  L+ LR L  +++AWN+ +TDE V   +   P    L  LD S C+ +      ALV Q   LE L +  CP++    L  L  +G
Sbjct:   93 LPTDIQARVLYSGYFNSVYVLTNLSLVSKGWHAMASKCYHELDLSRLPHLDDNHLSRMASRFQGVHSLDLSFCDSVGDSVTMA---LTRCNTTLIRISLRGCGVSDQGLQEIFRFTRLESVDVSKRKRNQSTLLTDDGLRPLAHLRHLQEVNLAWNRLITDEGVRILLSPTPGSKHLRVLDLSCCERLTDAVCEALVGQ--PLEALSLSGCPQITDQALRILYVDG 313
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BLAST of mRNA_P-wetherbeei_contig5619.1.1 vs. uniprot
Match: A0A7S1VJW9_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VJW9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 8.760e-9
Identity = 78/277 (28.16%), Postives = 124/277 (44.77%), Query Frame = 1 
Query:    4 LPDNALADVMFSGFLDTVAVVSKLTRVCKRVSRIGHDASKTLDLHN-KPVTEKQLATLLQRFHHVEALDLSFCRKLHSSVGAPGPPLQLCVKTLQDLSLRGVGVDDTTLSYV-GR------LTQLRRLDVSQSQLDASE--KVTDAGI-LALSGLRELTYLSVAWNKNVTDEAVAAAVGSMPRLAFLDASLCQLVGGETTTALVAQCPALEELLVEACPKMDRVCLSPLAAEGQEGCGGRRGGAAKL---RSLKLRHCERVTSAALT-VLCDVPSLR 789
            LPD  +A V FSGF+D++ ++  L+ V KR+++I H     LDL     +T    ++L+ R+ ++  L   +C++           L     TL  L LRG  V D   + + GR      ++ L+ LD+     D  +  ++TDA + L       L  L + W K VT     A++ S+ +L  L  SL  ++        + + P L  L + A         +PL  EG  G    +G A +L   R LKLR    +T A +  V   VP L+
Sbjct:   74 LPDEVVAKVFFSGFMDSIEIIRTLSVVSKRLNKIAHSTVNMLDLRGCTSLTPIDTSSLVSRYSNLTELHFDYCKQFGDDHLVALSSLN---DTLHGLHLRGTSVTDRGFAALFGRRVLGENISNLKVLDLGVVTKDDCQQLRITDATVDLLPENCPHLRVLILDWCKGVT----TASMTSIAKLVHLS-SLSLMLTSVGDVGELTKIPRLASLDLSA---------APLTEEGLLGL--LKGDACRLPYLRELKLRFQRCLTEAVVDKVAAHVPRLK 331
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BLAST of mRNA_P-wetherbeei_contig5619.1.1 vs. uniprot
Match: A0A835GIR8_SPOEX (F-box domain-containing protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835GIR8_SPOEX)

HSP 1 Score: 58.5 bits (140), Expect = 9.000e-6
Identity = 55/197 (27.92%), Postives = 87/197 (44.16%), Query Frame = 1 
Query:   82 VCKRVSRIGHDASK--TLDLHNKPVTEKQLATLLQR-------------FHHVEALDLSFCRKLHSSVGAPGPPLQLCVKTLQDLSLRGVGVDDTTLSYVGRLTQLRRLDVSQSQLDASEKVTDAGILALSGLRELTYLSVAWNKNVTDEAVAAAVGSMP-RLAFLDASLCQLVGGETTTALVAQCPALEELLVEAC 624
            VCKR  R+  D +    +DL NK +++  L  ++ R                ++ LDLS C    S++      L  C   L+ LSL  + V+D+TLS +GR T L  L+++     A    T+       G   L  L++ W   +++E +   V   P RL  L+    + +  +    LV +CP L EL V  C
Sbjct:  233 VCKRWYRVACDETLWVRMDLGNKTISKDALGRIMSRKPIGDWTPAAPPSASRLQYLDLSMCSISPSTLDT----LLACCPNLKKLSLESLPVEDSTLSIIGRCTNLETLNLTM----ACGLKTEGFKALFEGCTSLLALNLGWC-GISEECLQVLVEKAPQRLQRLNLGGIRTLNDDILERLVNRCPRLLELDVSDC 420
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5619.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A4D9D5V9_9STRA4.170e-2434.51Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1VJW9_9STRA8.760e-928.16Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A835GIR8_SPOEX9.000e-627.92F-box domain-containing protein n=1 Tax=Spodoptera... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5619contigP-wetherbeei_contig5619:99..1592 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7091.BGIBMGA001693-TA
Preferred nameSKP2
PFAMsF-box-like,LRR_6
Model size1072
Max annot lvl33208|Metazoa
KEGG koko:K03875
KEGG Pathwayko04068,ko04110,ko04120,ko04150,ko05168,ko05169,ko05200,ko05203,ko05222,map04068,map04110,map04120,map04150,map05168,map05169,map05200,map05203,map05222
KEGG ModuleM00381
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000086,GO:0000151,GO:0000209,GO:0000278,GO:0001654,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007049,GO:0007113,GO:0007275,GO:0007423,GO:0007444,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0009056,GO:0009057,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010498,GO:0010604,GO:0010646,GO:0010647,GO:0010941,GO:0016567,GO:0016579,GO:0016740,GO:0019005,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0022402,GO:0023051,GO:0023056,GO:0030163,GO:0031146,GO:0031323,GO:0031325,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033143,GO:0033145,GO:0033146,GO:0033148,GO:0035220,GO:0035295,GO:0036211,GO:0042127,GO:0042802,GO:0042981,GO:0043067,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0044843,GO:0045787,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048660,GO:0048661,GO:0048731,GO:0048749,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051603,GO:0051726,GO:0060255,GO:0060429,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902914,GO:1902916,GO:1903047,GO:1903320,GO:1903322,GO:1990234
Exons2
Evalue6.46e-09
EggNOG OGsKOG2120@1|root,KOG2120@2759|Eukaryota,39Y8W@33154|Opisthokonta,3BA3U@33208|Metazoa,3CY7Y@33213|Bilateria,41Y6W@6656|Arthropoda,3SHS9@50557|Insecta,445P5@7088|Lepidoptera
DescriptionF-box-like
Cds size870
COG categoryO
BRITEko00000,ko00001,ko00002,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.8298807-UTR-P-wetherbeei_contig5619:98..2701683186835.8298807-UTR-P-wetherbeei_contig5619:98..270Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5619 99..270 -
1683186835.8618395-UTR-P-wetherbeei_contig5619:1562..15921683186835.8618395-UTR-P-wetherbeei_contig5619:1562..1592Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5619 1563..1592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186835.8425262-CDS-P-wetherbeei_contig5619:270..8851683186835.8425262-CDS-P-wetherbeei_contig5619:270..885Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5619 271..885 -
1683186835.8519588-CDS-P-wetherbeei_contig5619:1307..15621683186835.8519588-CDS-P-wetherbeei_contig5619:1307..1562Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5619 1308..1562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5619.1.1prot_P-wetherbeei_contig5619.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5619 271..1562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5619.1.1

>prot_P-wetherbeei_contig5619.1.1 ID=prot_P-wetherbeei_contig5619.1.1|Name=mRNA_P-wetherbeei_contig5619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=290bp
MFSGFLDTVAVVSKLTRVCKRVSRIGHDASKTLDLHNKPVTEKQLATLLQ
RFHHVEALDLSFCRKLHSSVGAPGPPLQLCVKTLQDLSLRGVGVDDTTLS
YVGRLTQLRRLDVSQSQLDASEKVTDAGILALSGLRELTYLSVAWNKNVT
DEAVAAAVGSMPRLAFLDASLCQLVGGETTTALVAQCPALEELLVEACPK
MDRVCLSPLAAEGQEGCGGRRGGAAKLRSLKLRHCERVTSAALTVLCDVP
SLRVSFFAAFPIIECRFAIWKWNFLTAILCRPAFLVLNA*
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mRNA from alignment at P-wetherbeei_contig5619:99..1592-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5619.1.1 ID=mRNA_P-wetherbeei_contig5619.1.1|Name=mRNA_P-wetherbeei_contig5619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1494bp|location=Sequence derived from alignment at P-wetherbeei_contig5619:99..1592- (Phaeothamnion wetherbeei SAG_119_79)
GTCCTACCGGACAACGCGCTAGCCGACGTCATGTTCAGCGGCTTCCTCGA
CACTGTGGCGGTCGTGTCCAAGCTCACCCGCGTGTGCAAGCGTGTCAGCC
GCATCGGTCACGACGCCAGCAAGACACTGGACCTCCACAACAAGCCCGTG
ACGGAGAAGCAGCTGGCGACCCTTCTCCAGCGCTTCCACCATGTCGAGGC
TCTCGACCTCAGCTTCTGCCGCAAGCTCCACAGCAGTGTCGGGGCGCCGG
GGCCCCCCCTCCAGCTCTGCGTCAAGACGCTCCAGGTGCGCGGTCGCAGA
ACTTTATGGTGATGCTGCTGATGTAGGCGCTGCTGTTTTGGGGGAAGGTG
GGCCGAGGCGGCCACACGTTCTTTTGCCGTGCTGATTTTCTGTGGTCTTC
GCTTGCTTGCCGATGGCATGGTGTTCTGTTCAATTGCCGTACTGTCCTTT
GCCGTTCGTAAGTCCTCCGATTGTTTAAAACGGCAAATAGGTGAGGCGTG
CTTTTTTAATGTCGCAGTGCCTGCGTTCTGCGCTTTACCAAAACACGTGA
TCAAACTTCATATGAAAATGTTCACTCCGTGCCTACTGGCCGCTTTTCAT
AATGCATGTTATCTTGCGGTTTTTGCTGGTTTCCCCAACTTCTCATGTTG
CCATTTTCTCATTCTCCAAGCTGCCCTTTTCATACCTTCCATCTGACCCC
AAAACAGGACCTGTCGCTGCGCGGTGTGGGCGTGGATGACACGACGCTGT
CGTACGTCGGCCGCCTGACGCAACTCCGCCGGCTGGACGTCTCCCAGTCA
CAGCTGGACGCGTCCGAGAAGGTGACGGACGCCGGCATCCTTGCGCTCTC
AGGCCTGCGCGAGCTTACCTACCTGAGCGTCGCCTGGAACAAGAACGTGA
CTGACGAGGCCGTTGCCGCCGCCGTCGGCAGCATGCCGCGGCTGGCGTTT
CTCGACGCGTCACTCTGCCAGTTGGTCGGCGGTGAGACGACGACAGCGCT
CGTGGCCCAGTGCCCGGCGTTGGAGGAGCTCCTGGTAGAGGCGTGCCCTA
AGATGGACCGCGTCTGCCTGTCGCCGCTGGCGGCGGAGGGCCAGGAGGGC
TGCGGCGGCCGCCGCGGAGGCGCGGCGAAACTGCGGAGCCTCAAACTACG
GCACTGCGAGCGGGTCACGTCCGCAGCGCTCACGGTGCTGTGCGACGTTC
CGAGTCTTCGCGTAAGTTTTTTTGCTGCGTTTCCAATTATCGAATGCCGC
TTTGCAATCTGGAAGTGGAATTTCTTGACGGCTATTTTGTGCCGCCCCGC
TTTTCTAGTTCTGAACGCGTGATGGGGAGAATATGGTATTGCGTTTGATT
CTTTGGCCCGACAGCATGACGTTTTGGCATTCCAGCATAGTGCATCATTC
CAACTGAGACCTTTTCTGCATTTTCTTGCGAGGTAGTTTTTCCGCCACAT
GATTTTTTTTGCAAAAACTCGCAAATTTTTGACTGTTCTCTGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5619:99..1592-

>mRNA_P-wetherbeei_contig5619.1.1 ID=mRNA_P-wetherbeei_contig5619.1.1|Name=mRNA_P-wetherbeei_contig5619.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=870bp|location=Sequence derived from alignment at P-wetherbeei_contig5619:99..1592- (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCAGCGGCTTCCTCGACACTGTGGCGGTCGTGTCCAAGCTCACCCG
CGTGTGCAAGCGTGTCAGCCGCATCGGTCACGACGCCAGCAAGACACTGG
ACCTCCACAACAAGCCCGTGACGGAGAAGCAGCTGGCGACCCTTCTCCAG
CGCTTCCACCATGTCGAGGCTCTCGACCTCAGCTTCTGCCGCAAGCTCCA
CAGCAGTGTCGGGGCGCCGGGGCCCCCCCTCCAGCTCTGCGTCAAGACGC
TCCAGGACCTGTCGCTGCGCGGTGTGGGCGTGGATGACACGACGCTGTCG
TACGTCGGCCGCCTGACGCAACTCCGCCGGCTGGACGTCTCCCAGTCACA
GCTGGACGCGTCCGAGAAGGTGACGGACGCCGGCATCCTTGCGCTCTCAG
GCCTGCGCGAGCTTACCTACCTGAGCGTCGCCTGGAACAAGAACGTGACT
GACGAGGCCGTTGCCGCCGCCGTCGGCAGCATGCCGCGGCTGGCGTTTCT
CGACGCGTCACTCTGCCAGTTGGTCGGCGGTGAGACGACGACAGCGCTCG
TGGCCCAGTGCCCGGCGTTGGAGGAGCTCCTGGTAGAGGCGTGCCCTAAG
ATGGACCGCGTCTGCCTGTCGCCGCTGGCGGCGGAGGGCCAGGAGGGCTG
CGGCGGCCGCCGCGGAGGCGCGGCGAAACTGCGGAGCCTCAAACTACGGC
ACTGCGAGCGGGTCACGTCCGCAGCGCTCACGGTGCTGTGCGACGTTCCG
AGTCTTCGCGTAAGTTTTTTTGCTGCGTTTCCAATTATCGAATGCCGCTT
TGCAATCTGGAAGTGGAATTTCTTGACGGCTATTTTGTGCCGCCCCGCTT
TTCTAGTTCTGAACGCGTGA
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