prot_P-wetherbeei_contig50964.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig50964.1.1
Unique Nameprot_P-wetherbeei_contig50964.1.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length184
Homology
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: UPI0015C562C1 (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI0015C562C1)

HSP 1 Score: 301 bits (770), Expect = 6.120e-96
Identity = 154/184 (83.70%), Postives = 170/184 (92.39%), Query Frame = 0
Query:    1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 184
            EFR AGRRTALVRTLR+ FP+ AVALLGVYALSI +TAGLVG ETL G+SIR+ILP+DL MKNPRYEGFNKDGGSYVFTAKTA+QDLT+P VV LN I GEVYQ DKTRTDITA RG+FNNEK+LLDLYE+INVDSQSGLKARLT+ATILTKEDLLTS +PVLVEFP+GS+RSK+MTLRQKARE
Sbjct:   28 EFRSAGRRTALVRTLRIAFPLTAVALLGVYALSIVQTAGLVGQETLSGISIRKILPEDLAMKNPRYEGFNKDGGSYVFTAKTAQQDLTIPGVVTLNDITGEVYQPDKTRTDITAKRGIFNNEKNLLDLYEQINVDSQSGLKARLTRATILTKEDLLTSEEPVLVEFPNGSVRSKRMTLRQKARE 211          
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: UPI000A064814 (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000A064814)

HSP 1 Score: 273 bits (698), Expect = 4.290e-85
Identity = 137/184 (74.46%), Postives = 163/184 (88.59%), Query Frame = 0
Query:    1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 184
            EFR+A RRT +VRTLR+  P+ A+ LLG+Y L+IARTAGLVGSETLP +++R+ILP+DL+MKNPRYEG+NKDGGSYVF AKTA+QDL  P+V+KLNGI GEVYQADKTRTDI A RG+FNN K +LDL++EINV SQSGLKA+LT+ATIL  EDLL S QPV+VEFPSGS+RSK+MTLRQKARE
Sbjct:   31 EFRKARRRTIVVRTLRLACPILAIGLLGIYGLTIARTAGLVGSETLPEIAVRKILPEDLSMKNPRYEGYNKDGGSYVFMAKTAQQDLKTPNVIKLNGITGEVYQADKTRTDIAASRGIFNNTKRVLDLFDEINVVSQSGLKAKLTRATILINEDLLKSPQPVVVEFPSGSVRSKEMTLRQKARE 214          
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: V5SAG5_9HYPH (Organic solvent tolerance protein OstA n=2 Tax=Hyphomicrobium TaxID=81 RepID=V5SAG5_9HYPH)

HSP 1 Score: 248 bits (633), Expect = 2.280e-75
Identity = 127/184 (69.02%), Postives = 152/184 (82.61%), Query Frame = 0
Query:    1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 184
            EF +A RRT +VR LR+VFP   VALLGVY ++IA+  GLV  + LP +++RQILP DL M NPRYEGF KDG SY FTAKTA+ DLT P+VV LNGI GE+YQADKTRTD+TAVRGVFNN  S+L+LYE+I+V S+SGLKA+LT+ATIL KEDLLTS +PV V FPSG++ +KQMTLRQKARE
Sbjct:   66 EFEKAARRTMIVRLLRIVFPGAIVALLGVYGIAIAQKTGLVSPDALPEVALRQILPADLAMTNPRYEGFGKDGVSYKFTAKTADPDLTNPNVVTLNGISGEIYQADKTRTDVTAVRGVFNNNDSVLELYEQIDVVSESGLKAKLTRATILAKEDLLTSPEPVAVAFPSGTVHAKQMTLRQKARE 249          
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: UPI00092FDA7D (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI00092FDA7D)

HSP 1 Score: 169 bits (428), Expect = 5.070e-46
Identity = 93/184 (50.54%), Postives = 128/184 (69.57%), Query Frame = 0
Query:    1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 184
             F RA R T  VR LR + P GA A+L +Y + +  TAGLV  + +P + + +I+PD+LTM NPRYEGFNKDGG YV  A TA QDL     V+LNGI G++  A K++T++ AV+G FN + + L L   I++ ++SGLKA+L+ ATILTK++++ S +PVLVE PSG+IRS +M L  K RE
Sbjct:   25 NFVRARRHTRFVRALRFLLPSGACAVLALYLVMVLETAGLV--DGIPHVELPRIIPDNLTMDNPRYEGFNKDGGKYVVVADTAIQDLVNTEHVRLNGINGDLTDAKKSKTNLKAVQGDFNTKTNELLLSGGIDIVAESGLKAKLSSATILTKDNVIFSKEPVLVEMPSGTIRSNEMRLLNKTRE 206          
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: UPI001992903F (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI001992903F)

HSP 1 Score: 167 bits (422), Expect = 4.450e-45
Identity = 91/181 (50.28%), Postives = 125/181 (69.06%), Query Frame = 0
Query:    4 RAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 184
            RA R T +VRTLR   P  A  ++ +Y   I  T G V    +P L + +ILPD+LTM NP YEGFNKDGG YV  AKTA QDL     V+LN I G++  A+K++T++TA +GVFN + + L+L   I++ ++SGLKA+L+ ATI T E+++TS +PVLVE PSG+IRSK+M +  K+RE
Sbjct:   33 RARRHTRVVRTLRFSLPSAAAGIVVLYFAMILDTTGWVAG--IPKLELPRILPDNLTMDNPSYEGFNKDGGKYVVRAKTAIQDLVNTEFVRLNDITGDMTDANKSKTNLTAAKGVFNTKTNQLELAGGIDIVAESGLKAKLSTATIETNENIITSKEPVLVEMPSGTIRSKEMRILSKSRE 211          
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: A0A109BKN0_HYPSL (Uncharacterized protein n=2 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A109BKN0_HYPSL)

HSP 1 Score: 166 bits (420), Expect = 7.770e-45
Identity = 91/184 (49.46%), Postives = 123/184 (66.85%), Query Frame = 0
Query:    1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 184
             F+ A R T LVR LR +FPV  V +LG+Y L +   +G+V    LP L + +I+P++LTM NP YEG+  DGG Y   AKTA QD T    V+LN I G+++ A K RT +TA+ G FN +++ L L   I++ + SGLKA+L++ATILT E L+TSN+PVLVE P+G+IRS  M L  K RE
Sbjct:   30 NFKLAKRHTRLVRLLRWLFPVSIVGILGLYLLLMLDNSGMVSQ--LPRLEVPRIIPENLTMDNPSYEGYTNDGGRYTVHAKTAVQDFTNTDFVRLNTITGDLFDAKKARTRLTALEGEFNTKENQLVLSGGIDIVADSGLKAKLSRATILTNESLITSNEPVLVEMPTGTIRSNSMRLLSKTRE 211          
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: A0A6I0EL33_HYPSQ (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EL33_HYPSQ)

HSP 1 Score: 164 bits (414), Expect = 5.550e-44
Identity = 90/184 (48.91%), Postives = 123/184 (66.85%), Query Frame = 0
Query:    1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 184
             F RA R T LVR LR   P   V ++ +Y + I  T G V    LP L + +I+PD+LTM NP YEGFNKDGG YV  AKTA QDL     V+LNGI G++  A+K++T +TA  G FN + + LDL   I++ + SGLKA+L++ATILT ++++ S +PV+V+ PSG+IRS +M L  K+RE
Sbjct:   30 NFARARRHTRLVRALRWSLPGAGVGIVVLYFVMILDTTGWVAG--LPHLEVPRIIPDNLTMDNPSYEGFNKDGGKYVVRAKTAVQDLVNTQFVRLNGITGDMTDANKSKTHLTAAHGEFNTKTNQLDLSGGIDIVADSGLKAKLSRATILTNDNVIFSKEPVVVDMPSGTIRSNEMRLLNKSRE 211          
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: A0A7Y5CYC6_HYPSQ (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y5CYC6_HYPSQ)

HSP 1 Score: 162 bits (410), Expect = 1.950e-43
Identity = 87/182 (47.80%), Postives = 124/182 (68.13%), Query Frame = 0
Query:    5 AGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHV--VKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 184
            A R + LVR L+   P+  +A  G++ LS+ RT G      +  L I QILP++L M+NP YEGFNKDGG Y   A +A+QDL +  +  +KLNGI GE+  A K +T +TA RG F+++ ++L+LY+ I+VD  +G+KA LT+ATI TKE+++TS +PV V   +GSI + QMT RQKA+E
Sbjct:   34 ARRHSLLVRILKASLPLSGLAFAGLFGLSVLRTMGW--GTAITALEIPQILPENLAMQNPHYEGFNKDGGRYWVKADSAQQDLKVKALTLIKLNGITGELIDAKKLKTTLTAKRGTFDSKTNVLELYDSIDVDGDAGMKAHLTRATIDTKENIITSKEPVQVTMATGSITANQMTARQKAKE 213          
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: A0A6I3KI96_9HYPH (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KI96_9HYPH)

HSP 1 Score: 161 bits (407), Expect = 5.410e-43
Identity = 89/184 (48.37%), Postives = 122/184 (66.30%), Query Frame = 0
Query:    1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 184
             F RA R T LVR +R   P    +++ VY L I  T G V S  LP L + +I+PD+LTM NP YEGFNKDGG YV  AKTA QDL     V+LN I G++  A K++T +TA  G FN + + L+L   I++ ++SG+KA+L++ATILT ++++ S +PVLV+ PSG+IRS +M L  K RE
Sbjct:   30 NFVRARRHTLLVRAMRWSLPTAGASVIVVYFLMIFNTTGWVAS--LPKLEMPRIIPDNLTMDNPTYEGFNKDGGKYVVRAKTAVQDLVNTEFVRLNDITGDMTDAKKSKTKLTAAHGEFNTKTNKLELSGGIDIVAESGMKAKLSRATILTDDNVIFSKEPVLVDMPSGTIRSNEMRLLNKTRE 211          
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: A0A433A6M2_HYPSQ (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A433A6M2_HYPSQ)

HSP 1 Score: 159 bits (403), Expect = 1.850e-42
Identity = 85/180 (47.22%), Postives = 120/180 (66.67%), Query Frame = 0
Query:    5 AGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 184
            A R +  VRTL++  P  AVA+ G  A++I   AG+     LP L + +I+ D+L M NP Y+GFN DGG Y   A+TA+QDL     V L+GI GE+  A K +T +TAVRG+F+N+ ++L+LYE INV    GL A+LT+ATI TKE+++TS+QP  +   +G I S Q+T+RQK +E
Sbjct:   37 ATRHSRRVRTLKIALPAFAVAMTGFVAMNILGNAGV--GPVLPPLEVPKIVADNLKMHNPHYQGFNADGGHYWVKAETAQQDLKALTAVHLDGITGELTDAKKQKTYLTAVRGIFDNKSNILELYESINVTGDGGLNAKLTRATIQTKENIITSDQPSTILMSAGQITSNQLTIRQKTKE 214          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015C562C16.120e-9683.70LPS export ABC transporter periplasmic protein Lpt... [more]
UPI000A0648144.290e-8574.46LPS export ABC transporter periplasmic protein Lpt... [more]
V5SAG5_9HYPH2.280e-7569.02Organic solvent tolerance protein OstA n=2 Tax=Hyp... [more]
UPI00092FDA7D5.070e-4650.54LPS export ABC transporter periplasmic protein Lpt... [more]
UPI001992903F4.450e-4550.28LPS export ABC transporter periplasmic protein Lpt... [more]
A0A109BKN0_HYPSL7.770e-4549.46Uncharacterized protein n=2 Tax=Hyphomicrobium sul... [more]
A0A6I0EL33_HYPSQ5.550e-4448.91LPS export ABC transporter periplasmic protein Lpt... [more]
A0A7Y5CYC6_HYPSQ1.950e-4347.80LPS export ABC transporter periplasmic protein Lpt... [more]
A0A6I3KI96_9HYPH5.410e-4348.37LPS export ABC transporter periplasmic protein Lpt... [more]
A0A433A6M2_HYPSQ1.850e-4247.22LPS export ABC transporter periplasmic protein Lpt... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026265Lipopolysaccharide export system protein LptCTIGRFAMTIGR04409TIGR04409coord: 57..183
e-value: 3.9E-13
score: 47.3
IPR010664Lipopolysaccharide assembly, LptC-relatedPFAMPF06835LptCcoord: 57..182
e-value: 2.6E-12
score: 46.7
NoneNo IPR availableGENE3D2.60.450.10Lipopolysaccharide (LPS) transport protein A like domaincoord: 75..184
e-value: 1.2E-5
score: 27.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig50964contigP-wetherbeei_contig50964:5..556 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig50964.1.1mRNA_P-wetherbeei_contig50964.1.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig50964 5..556 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig50964.1.1 ID=prot_P-wetherbeei_contig50964.1.1|Name=mRNA_P-wetherbeei_contig50964.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp
EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLS
IRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVG
EVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATIL
TKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026265LptC
IPR010664LipoPS_assembly_LptC-rel