mRNA_P-wetherbeei_contig50964.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: UPI0015C562C1 (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI0015C562C1) HSP 1 Score: 301 bits (770), Expect = 6.120e-96 Identity = 154/184 (83.70%), Postives = 170/184 (92.39%), Query Frame = 1
Query: 1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 552
EFR AGRRTALVRTLR+ FP+ AVALLGVYALSI +TAGLVG ETL G+SIR+ILP+DL MKNPRYEGFNKDGGSYVFTAKTA+QDLT+P VV LN I GEVYQ DKTRTDITA RG+FNNEK+LLDLYE+INVDSQSGLKARLT+ATILTKEDLLTS +PVLVEFP+GS+RSK+MTLRQKARE
Sbjct: 28 EFRSAGRRTALVRTLRIAFPLTAVALLGVYALSIVQTAGLVGQETLSGISIRKILPEDLAMKNPRYEGFNKDGGSYVFTAKTAQQDLTIPGVVTLNDITGEVYQPDKTRTDITAKRGIFNNEKNLLDLYEQINVDSQSGLKARLTRATILTKEDLLTSEEPVLVEFPNGSVRSKRMTLRQKARE 211
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: UPI000A064814 (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000A064814) HSP 1 Score: 273 bits (698), Expect = 4.290e-85 Identity = 137/184 (74.46%), Postives = 163/184 (88.59%), Query Frame = 1
Query: 1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 552
EFR+A RRT +VRTLR+ P+ A+ LLG+Y L+IARTAGLVGSETLP +++R+ILP+DL+MKNPRYEG+NKDGGSYVF AKTA+QDL P+V+KLNGI GEVYQADKTRTDI A RG+FNN K +LDL++EINV SQSGLKA+LT+ATIL EDLL S QPV+VEFPSGS+RSK+MTLRQKARE
Sbjct: 31 EFRKARRRTIVVRTLRLACPILAIGLLGIYGLTIARTAGLVGSETLPEIAVRKILPEDLSMKNPRYEGYNKDGGSYVFMAKTAQQDLKTPNVIKLNGITGEVYQADKTRTDIAASRGIFNNTKRVLDLFDEINVVSQSGLKAKLTRATILINEDLLKSPQPVVVEFPSGSVRSKEMTLRQKARE 214
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: V5SAG5_9HYPH (Organic solvent tolerance protein OstA n=2 Tax=Hyphomicrobium TaxID=81 RepID=V5SAG5_9HYPH) HSP 1 Score: 248 bits (633), Expect = 2.280e-75 Identity = 127/184 (69.02%), Postives = 152/184 (82.61%), Query Frame = 1
Query: 1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 552
EF +A RRT +VR LR+VFP VALLGVY ++IA+ GLV + LP +++RQILP DL M NPRYEGF KDG SY FTAKTA+ DLT P+VV LNGI GE+YQADKTRTD+TAVRGVFNN S+L+LYE+I+V S+SGLKA+LT+ATIL KEDLLTS +PV V FPSG++ +KQMTLRQKARE
Sbjct: 66 EFEKAARRTMIVRLLRIVFPGAIVALLGVYGIAIAQKTGLVSPDALPEVALRQILPADLAMTNPRYEGFGKDGVSYKFTAKTADPDLTNPNVVTLNGISGEIYQADKTRTDVTAVRGVFNNNDSVLELYEQIDVVSESGLKAKLTRATILAKEDLLTSPEPVAVAFPSGTVHAKQMTLRQKARE 249
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: UPI00092FDA7D (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI00092FDA7D) HSP 1 Score: 169 bits (428), Expect = 5.070e-46 Identity = 93/184 (50.54%), Postives = 128/184 (69.57%), Query Frame = 1
Query: 1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 552
F RA R T VR LR + P GA A+L +Y + + TAGLV + +P + + +I+PD+LTM NPRYEGFNKDGG YV A TA QDL V+LNGI G++ A K++T++ AV+G FN + + L L I++ ++SGLKA+L+ ATILTK++++ S +PVLVE PSG+IRS +M L K RE
Sbjct: 25 NFVRARRHTRFVRALRFLLPSGACAVLALYLVMVLETAGLV--DGIPHVELPRIIPDNLTMDNPRYEGFNKDGGKYVVVADTAIQDLVNTEHVRLNGINGDLTDAKKSKTNLKAVQGDFNTKTNELLLSGGIDIVAESGLKAKLSSATILTKDNVIFSKEPVLVEMPSGTIRSNEMRLLNKTRE 206
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: UPI001992903F (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=UPI001992903F) HSP 1 Score: 167 bits (422), Expect = 4.450e-45 Identity = 91/181 (50.28%), Postives = 125/181 (69.06%), Query Frame = 1
Query: 10 RAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 552
RA R T +VRTLR P A ++ +Y I T G V +P L + +ILPD+LTM NP YEGFNKDGG YV AKTA QDL V+LN I G++ A+K++T++TA +GVFN + + L+L I++ ++SGLKA+L+ ATI T E+++TS +PVLVE PSG+IRSK+M + K+RE
Sbjct: 33 RARRHTRVVRTLRFSLPSAAAGIVVLYFAMILDTTGWVAG--IPKLELPRILPDNLTMDNPSYEGFNKDGGKYVVRAKTAIQDLVNTEFVRLNDITGDMTDANKSKTNLTAAKGVFNTKTNQLELAGGIDIVAESGLKAKLSTATIETNENIITSKEPVLVEMPSGTIRSKEMRILSKSRE 211
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: A0A109BKN0_HYPSL (Uncharacterized protein n=2 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A109BKN0_HYPSL) HSP 1 Score: 166 bits (420), Expect = 7.770e-45 Identity = 91/184 (49.46%), Postives = 123/184 (66.85%), Query Frame = 1
Query: 1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 552
F+ A R T LVR LR +FPV V +LG+Y L + +G+V LP L + +I+P++LTM NP YEG+ DGG Y AKTA QD T V+LN I G+++ A K RT +TA+ G FN +++ L L I++ + SGLKA+L++ATILT E L+TSN+PVLVE P+G+IRS M L K RE
Sbjct: 30 NFKLAKRHTRLVRLLRWLFPVSIVGILGLYLLLMLDNSGMVSQ--LPRLEVPRIIPENLTMDNPSYEGYTNDGGRYTVHAKTAVQDFTNTDFVRLNTITGDLFDAKKARTRLTALEGEFNTKENQLVLSGGIDIVADSGLKAKLSRATILTNESLITSNEPVLVEMPTGTIRSNSMRLLSKTRE 211
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: A0A6I0EL33_HYPSQ (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EL33_HYPSQ) HSP 1 Score: 164 bits (414), Expect = 5.550e-44 Identity = 90/184 (48.91%), Postives = 123/184 (66.85%), Query Frame = 1
Query: 1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 552
F RA R T LVR LR P V ++ +Y + I T G V LP L + +I+PD+LTM NP YEGFNKDGG YV AKTA QDL V+LNGI G++ A+K++T +TA G FN + + LDL I++ + SGLKA+L++ATILT ++++ S +PV+V+ PSG+IRS +M L K+RE
Sbjct: 30 NFARARRHTRLVRALRWSLPGAGVGIVVLYFVMILDTTGWVAG--LPHLEVPRIIPDNLTMDNPSYEGFNKDGGKYVVRAKTAVQDLVNTQFVRLNGITGDMTDANKSKTHLTAAHGEFNTKTNQLDLSGGIDIVADSGLKAKLSRATILTNDNVIFSKEPVVVDMPSGTIRSNEMRLLNKSRE 211
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: A0A7Y5CYC6_HYPSQ (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y5CYC6_HYPSQ) HSP 1 Score: 162 bits (410), Expect = 1.950e-43 Identity = 87/182 (47.80%), Postives = 124/182 (68.13%), Query Frame = 1
Query: 13 AGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHV--VKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 552
A R + LVR L+ P+ +A G++ LS+ RT G + L I QILP++L M+NP YEGFNKDGG Y A +A+QDL + + +KLNGI GE+ A K +T +TA RG F+++ ++L+LY+ I+VD +G+KA LT+ATI TKE+++TS +PV V +GSI + QMT RQKA+E
Sbjct: 34 ARRHSLLVRILKASLPLSGLAFAGLFGLSVLRTMGW--GTAITALEIPQILPENLAMQNPHYEGFNKDGGRYWVKADSAQQDLKVKALTLIKLNGITGELIDAKKLKTTLTAKRGTFDSKTNVLELYDSIDVDGDAGMKAHLTRATIDTKENIITSKEPVQVTMATGSITANQMTARQKAKE 213
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: A0A6I3KI96_9HYPH (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KI96_9HYPH) HSP 1 Score: 161 bits (407), Expect = 5.410e-43 Identity = 89/184 (48.37%), Postives = 122/184 (66.30%), Query Frame = 1
Query: 1 EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 552
F RA R T LVR +R P +++ VY L I T G V S LP L + +I+PD+LTM NP YEGFNKDGG YV AKTA QDL V+LN I G++ A K++T +TA G FN + + L+L I++ ++SG+KA+L++ATILT ++++ S +PVLV+ PSG+IRS +M L K RE
Sbjct: 30 NFVRARRHTLLVRAMRWSLPTAGASVIVVYFLMIFNTTGWVAS--LPKLEMPRIIPDNLTMDNPTYEGFNKDGGKYVVRAKTAVQDLVNTEFVRLNDITGDMTDAKKSKTKLTAAHGEFNTKTNKLELSGGIDIVAESGMKAKLSRATILTDDNVIFSKEPVLVDMPSGTIRSNEMRLLNKTRE 211
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Match: A0A433A6M2_HYPSQ (LPS export ABC transporter periplasmic protein LptC n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A433A6M2_HYPSQ) HSP 1 Score: 159 bits (403), Expect = 1.850e-42 Identity = 85/180 (47.22%), Postives = 120/180 (66.67%), Query Frame = 1
Query: 13 AGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSIRQILPDDLTMKNPRYEGFNKDGGSYVFTAKTAEQDLTLPHVVKLNGIVGEVYQADKTRTDITAVRGVFNNEKSLLDLYEEINVDSQSGLKARLTQATILTKEDLLTSNQPVLVEFPSGSIRSKQMTLRQKARE 552
A R + VRTL++ P AVA+ G A++I AG+ LP L + +I+ D+L M NP Y+GFN DGG Y A+TA+QDL V L+GI GE+ A K +T +TAVRG+F+N+ ++L+LYE INV GL A+LT+ATI TKE+++TS+QP + +G I S Q+T+RQK +E
Sbjct: 37 ATRHSRRVRTLKIALPAFAVAMTGFVAMNILGNAGV--GPVLPPLEVPKIVADNLKMHNPHYQGFNADGGHYWVKAETAQQDLKALTAVHLDGITGELTDAKKQKTYLTAVRGIFDNKSNILELYESINVTGDGGLNAKLTRATIQTKENIITSDQPSTILMSAGQITSNQLTIRQKTKE 214 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig50964.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig50964.1.1 >prot_P-wetherbeei_contig50964.1.1 ID=prot_P-wetherbeei_contig50964.1.1|Name=mRNA_P-wetherbeei_contig50964.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=184bp EFRRAGRRTALVRTLRVVFPVGAVALLGVYALSIARTAGLVGSETLPGLSback to top mRNA from alignment at P-wetherbeei_contig50964:5..556+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig50964.1.1 ID=mRNA_P-wetherbeei_contig50964.1.1|Name=mRNA_P-wetherbeei_contig50964.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig50964:5..556+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig50964:5..556+ >mRNA_P-wetherbeei_contig50964.1.1 ID=mRNA_P-wetherbeei_contig50964.1.1|Name=mRNA_P-wetherbeei_contig50964.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig50964:5..556+ (Phaeothamnion wetherbeei SAG_119_79)back to top |