prot_P-wetherbeei_contig1664.1.2 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1664.1.2
Unique Nameprot_P-wetherbeei_contig1664.1.2
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length166
Homology
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835ZHX7_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHX7_9STRA)

HSP 1 Score: 160 bits (404), Expect = 1.510e-46
Identity = 77/161 (47.83%), Postives = 107/161 (66.46%), Query Frame = 0
Query:    4 LDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPGNYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 164
            ++ + G   ETGG     WDPLG A  EK L KY+  ELK+GRVA LA+LGV+ Q F  LPDPVF+ GA+P  A + ++ ERP A+ QIFL VG+++  + +      PG+ GFGI+P + EE  +L++KE+KN RLA +A +G   QE + G+GPIE +L
Sbjct:   44 VEDLIGADTETGGI----WDPLGFAKDEKSLYKYREAELKHGRVAQLAILGVLAQTFFHLPDPVFAGGARPQEALASLIKERPEAIAQIFLAVGVVELFLLKQDPEKAPGDLGFGIYPDTQEELEELQLKELKNGRLAQVAIVGAFVQEKLTGQGPIEQLL 200          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835ZDP1_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP1_9STRA)

HSP 1 Score: 156 bits (395), Expect = 3.360e-45
Identity = 80/161 (49.69%), Postives = 105/161 (65.22%), Query Frame = 0
Query:    4 LDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPGNYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 164
            +D + G   ET G     WDP G A  +  L KY+  ELK+GRVAMLA LGV+VQ FV LPDPVF+ GAKP  A  +++  RP AL QIFL  G ++ L+ +       G+ GFG +P ++EEF  L++KE+KN RLAM+A +GM  QE + G+GPIE IL
Sbjct:   43 VDELIGADTETSGV----WDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPDPVFANGAKPQTAAWELVTSRPEALAQIFLACGAIELLVLKQDPEKPAGDLGFGAYPDTEEEFETLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQIL 199          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835Z571_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z571_9STRA)

HSP 1 Score: 155 bits (393), Expect = 6.540e-45
Identity = 79/161 (49.07%), Postives = 106/161 (65.84%), Query Frame = 0
Query:    4 LDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPGNYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 164
            ++ + G   ETGG     WDP G A  +  L KY+  ELK+GRVAMLA LGV+VQ FV LPDPVF+ GA+P  A  ++ + RP AL QIFL  G ++ L+ +      PG+ GFG +P ++EE   L++KE+KN RLAM+A +GM  QE + G+GPIE IL
Sbjct:   42 VEELIGADTETGGV----WDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPDPVFADGARPQTAAFELASSRPEALAQIFLACGAVELLVLKQDPEKAPGDLGFGAYPDTEEELEVLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQIL 198          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: W7TXE6_9STRA (Light harvesting complex protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXE6_9STRA)

HSP 1 Score: 146 bits (369), Expect = 2.600e-41
Identity = 76/166 (45.78%), Postives = 108/166 (65.06%), Query Frame = 0
Query:    1 MSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPG--NYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 164
            ++ +  + G   ETGG     WDPLGL+ +E  L+KY+  ELK+GRVAM A+LG+ VQ    LPDPVFS   +PLAA  QV  +RP A+ QI +G+G+++       E   PG  N+G    P S++EF +L++KE+KN RLAM+A MG + QE + G+GP+E +L
Sbjct:   36 VASVSDLIGADTETGGI----WDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGLYHLPDPVFSN-PRPLAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQKEDRAPGDLNFGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVL 196          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A0G4FFG9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FFG9_VITBC)

HSP 1 Score: 142 bits (359), Expect = 9.660e-40
Identity = 76/166 (45.78%), Postives = 101/166 (60.84%), Query Frame = 0
Query:    1 MSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPG---NYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENI 163
            M  +D + G   ETGG     WDPLGL+ +E  L  Y+  ELK+GRV M+AVLGVIVQ + QLPDPVF+   +PL A  QV  +RP A++QI L +G  +      S    PG   N+G    P  + +F +L+ KE+KN RLAMI   GM+ QE + G+GP+E I
Sbjct:   40 MGAVDQLAGADVETGGV----WDPLGLSQNEDALSLYRAAELKHGRVCMMAVLGVIVQTYFQLPDPVFNN-PRPLEAIVQVWQQRPEAIIQILLAIGATELYFLRQSPEDPPGSLQNFGAAFRPRDEAKFEELQRKELKNGRLAMIGISGMLVQEALTGQGPLEQI 200          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 139 bits (351), Expect = 7.210e-39
Identity = 82/167 (49.10%), Postives = 110/167 (65.87%), Query Frame = 0
Query:    1 MSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIW-EDSESSEPGNYG-FGIF--PASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENI 163
            M++ D + G   ET G     WDPL L+  +  L KY+  ELK+GRVAMLA LGV+VQ F  LPDPVFS   +PLAA SQ+LAERP A  QIFL VG  +  I  +D E+  PG+   FG F  P+ ++E+  ++++E+KN RLAM+A +GM  QE + G+GPIE +
Sbjct:   13 MAVQD-MLGADIETSGV----WDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSN-PRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQL 173          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835YR33_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR33_9STRA)

HSP 1 Score: 123 bits (308), Expect = 4.420e-32
Identity = 69/162 (42.59%), Postives = 103/162 (63.58%), Query Frame = 0
Query:    1 MSL-LDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYF-VQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPG---NYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGK 157
            MS+ +D + G   E GG     +DP G +  E  L KY+  ELK+GR++MLA LG+ VQ   + +PDPVFS+ +KP+ AF +VL+ERP A +Q+ L +  L+ +  +     EPG   N+G    PA + ++A L++KE+KN RLAM+ FMGM+ QE + G+
Sbjct:   37 MSMSVDAMLGADVEVGGV----FDPAGFSKDESKLAKYRAVELKHGRISMLACLGMWVQSAGIHMPDPVFSE-SKPIDAFFKVLSERPAAAIQVLLAITWLETVASKGDVGKEPGDVGNFGDNFKPADEADYAALQLKELKNGRLAMMGFMGMLVQEALTGQ 193          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835YT25_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT25_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.290e-29
Identity = 64/153 (41.83%), Postives = 90/153 (58.82%), Query Frame = 0
Query:   18 ECAPWDPLGLASSEK--LLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNL--IWEDSESSEPGNYGF---GIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENI 163
            E A WDPLG  +++    +  Y+  ELK+GRVAMLA LG I Q +  LPDPVFSQ A+P  A  QV AERP A+ QI L +   + +    +      PG+  +    + P+  E +  ++++E+KN RLAM+A  G   QE + G+GPIE I
Sbjct:   53 ELATWDPLGFTNNQNPDTINWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSARPWDALQQVYAERPLAVAQILLAIFACEAIGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMMAIAGFFVQENLTGQGPIEQI 205          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: D8LBT8_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBT8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.310e-27
Identity = 70/167 (41.92%), Postives = 99/167 (59.28%), Query Frame = 0
Query:    7 VFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFS--QGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWED---SESSEPGNYGFGIFPASDEEFADL----RMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 164
            + G + ETGG     +DPLGLA+ E  L + ++ ELK+GRV MLA +GV+VQ FVQ PDP  S     +PL A  QV  ERP  LL I   +G+++  I  +   S  +EPG  G   + A+  E   L    +++E+K+ RLA +   GM+AQELV  +GP+E +L
Sbjct:    1 MVGASEETGGV----FDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLG-DFWQAARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLL 162          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A6H5KVZ6_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVZ6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.050e-26
Identity = 69/166 (41.57%), Postives = 98/166 (59.04%), Query Frame = 0
Query:    7 VFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFS--QGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWED---SESSEPGNYGFGIFPASDEE---FADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 164
            + G + ETGG     +DPLGLA+ E  L + ++ ELK+GRV MLA +GV+VQ FVQ PDP  S     +PL A  QV  ERP  LL I   +G+++  I  +   S  +EPG  G     A  E+   +   +++E+K+ RLA +   GM+AQELV  +GP+E +L
Sbjct:   56 MVGASEETGGV----FDPLGLATDETSLYRRRVAELKHGRVCMLATVGVLVQSFVQFPDPDRSAFSNTRPLGALFQVWRERPVILLGIVALMGLIELTIGREDYGSSEAEPGKLGELWQTARPEDPQLWRRRQLQELKHGRLASLGITGMLAQELVTHEGPVEQLL 217          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHX7_9STRA1.510e-4647.83Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835ZDP1_9STRA3.360e-4549.69Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A835Z571_9STRA6.540e-4549.07Light harvesting complex protein n=1 Tax=Tribonema... [more]
W7TXE6_9STRA2.600e-4145.78Light harvesting complex protein n=3 Tax=Monodopsi... [more]
A0A0G4FFG9_VITBC9.660e-4045.78Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A835ZIK7_9STRA7.210e-3949.10Chlorophyll a/b-binding protein domain-containing ... [more]
A0A835YR33_9STRA4.420e-3242.59Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835YT25_9STRA1.290e-2941.83Light harvesting complex protein n=2 Tax=Tribonema... [more]
D8LBT8_ECTSI1.310e-2741.92Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5KVZ6_9PHAE1.050e-2641.57LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 20..152
e-value: 1.9E-29
score: 103.3
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 13..165
e-value: 3.5E-35
score: 123.7
NoneNo IPR availablePANTHERPTHR21649:SF89CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 5..163
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 21..164
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 5..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1664contigP-wetherbeei_contig1664:609..2523 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1664.1.2mRNA_P-wetherbeei_contig1664.1.2Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1664 354..2822 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1664.1.2 ID=prot_P-wetherbeei_contig1664.1.2|Name=mRNA_P-wetherbeei_contig1664.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAML
AVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILD
NLIWEDSESSEPGNYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIA
QELVNGKGPIENILG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln