mRNA_P-wetherbeei_contig1664.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1664.1.2
Unique NamemRNA_P-wetherbeei_contig1664.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835ZDP1_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP1_9STRA)

HSP 1 Score: 167 bits (423), Expect = 7.240e-47
Identity = 97/197 (49.24%), Postives = 128/197 (64.97%), Query Frame = 3
Query:  210 LALLAGSASAFIAP---ALPTRAVTSRASTAVRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPGNYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 791
            LA +AG ASAF+AP   A     V S +ST+++MS+ D + G   ET G     WDP G A  +  L KY+  ELK+GRVAMLA LGV+VQ FV LPDPVF+ GAKP  A  +++  RP AL QIFL  G ++ L+ +       G+ GFG +P ++EEF  L++KE+KN RLAM+A +GM  QE + G+GPIE IL
Sbjct:    9 LACVAG-ASAFVAPSSFAGSALKVASTSSTSLKMSV-DELIGADTETSGV----WDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPDPVFANGAKPQTAAWELVTSRPEALAQIFLACGAIELLVLKQDPEKPAGDLGFGAYPDTEEEFETLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQIL 199          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835ZHX7_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHX7_9STRA)

HSP 1 Score: 167 bits (423), Expect = 7.460e-47
Identity = 89/192 (46.35%), Postives = 123/192 (64.06%), Query Frame = 3
Query:  225 GSASAFIAPALPTRAVTSRASTA---VRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPGNYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 791
            GSA+AF+AP+         A  A   +RM++ D + G   ETGG     WDPLG A  EK L KY+  ELK+GRVA LA+LGV+ Q F  LPDPVF+ GA+P  A + ++ ERP A+ QIFL VG+++  + +      PG+ GFGI+P + EE  +L++KE+KN RLA +A +G   QE + G+GPIE +L
Sbjct:   14 GSAAAFVAPSSFAGTALKAAPVATGPLRMAVED-LIGADTETGGI----WDPLGFAKDEKSLYKYREAELKHGRVAQLAILGVLAQTFFHLPDPVFAGGARPQEALASLIKERPEAIAQIFLAVGVVELFLLKQDPEKAPGDLGFGIYPDTQEELEELQLKELKNGRLAQVAIVGAFVQEKLTGQGPIEQLL 200          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835Z571_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z571_9STRA)

HSP 1 Score: 163 bits (412), Expect = 3.050e-45
Identity = 91/190 (47.89%), Postives = 122/190 (64.21%), Query Frame = 3
Query:  231 ASAFIAP---ALPTRAVTSRASTAVRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPGNYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 791
            A AF+AP   A     V +  ST++RMS+ + + G   ETGG     WDP G A  +  L KY+  ELK+GRVAMLA LGV+VQ FV LPDPVF+ GA+P  A  ++ + RP AL QIFL  G ++ L+ +      PG+ GFG +P ++EE   L++KE+KN RLAM+A +GM  QE + G+GPIE IL
Sbjct:   14 ACAFVAPSSFAGSALKVATPTSTSLRMSVEE-LIGADTETGGV----WDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPDPVFADGARPQTAAFELASSRPEALAQIFLACGAVELLVLKQDPEKAPGDLGFGAYPDTEEELEVLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQIL 198          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A0G4FFG9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FFG9_VITBC)

HSP 1 Score: 150 bits (379), Expect = 2.640e-40
Identity = 89/201 (44.28%), Postives = 118/201 (58.71%), Query Frame = 3
Query:  201 VAALALLAGSASAFIAPALPTRAVTSR--ASTAVRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPG---NYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENI 788
            + A+ALL   A AF+ P     A+ SR  A  A  M  +D + G   ETGG     WDPLGL+ +E  L  Y+  ELK+GRV M+AVLGVIVQ + QLPDPVF+   +PL A  QV  +RP A++QI L +G  +      S    PG   N+G    P  + +F +L+ KE+KN RLAMI   GM+ QE + G+GP+E I
Sbjct:    5 ICAIALLVVGAHAFVPPTGFQGALRSRGAARPATTMGAVDQLAGADVETGGV----WDPLGLSQNEDALSLYRAAELKHGRVCMMAVLGVIVQTYFQLPDPVFNN-PRPLEAIVQVWQQRPEAIIQILLAIGATELYFLRQSPEDPPGSLQNFGAAFRPRDEAKFEELQRKELKNGRLAMIGISGMLVQEALTGQGPLEQI 200          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: W7TXE6_9STRA (Light harvesting complex protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXE6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.220e-40
Identity = 86/193 (44.56%), Postives = 121/193 (62.69%), Query Frame = 3
Query:  219 LAGSASAFIAPALPTRAVTSRASTAVRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPG--NYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENIL 791
            L  SA+AFI PA      +S A   + ++ +  + G   ETGG     WDPLGL+ +E  L+KY+  ELK+GRVAM A+LG+ VQ    LPDPVFS   +PLAA  QV  +RP A+ QI +G+G+++       E   PG  N+G    P S++EF +L++KE+KN RLAM+A MG + QE + G+GP+E +L
Sbjct:   10 LLSSAAAFI-PATFNTGKSSYARKNLVVASVSDLIGADTETGGI----WDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGLYHLPDPVFSN-PRPLAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQKEDRAPGDLNFGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVL 196          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 143 bits (361), Expect = 5.570e-38
Identity = 85/175 (48.57%), Postives = 114/175 (65.14%), Query Frame = 3
Query:  276 SRASTAVRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIW-EDSESSEPGNYG-FGIF--PASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENI 788
            S A+   RM++ D + G   ET G     WDPL L+  +  L KY+  ELK+GRVAMLA LGV+VQ F  LPDPVFS   +PLAA SQ+LAERP A  QIFL VG  +  I  +D E+  PG+   FG F  P+ ++E+  ++++E+KN RLAM+A +GM  QE + G+GPIE +
Sbjct:    5 SAAAAVTRMAVQD-MLGADIETSGV----WDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSN-PRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQL 173          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835YR33_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR33_9STRA)

HSP 1 Score: 136 bits (342), Expect = 7.410e-35
Identity = 81/195 (41.54%), Postives = 121/195 (62.05%), Query Frame = 3
Query:  201 VAALALLAGSASAFIAPALPTRAVTSRASTAVRMSL-LDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYF-VQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPG---NYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGK 770
            V A+ALLAGSA AF+  +    A+ +  +    MS+ +D + G   E GG     +DP G +  E  L KY+  ELK+GR++MLA LG+ VQ   + +PDPVFS+ +KP+ AF +VL+ERP A +Q+ L +  L+ +  +     EPG   N+G    PA + ++A L++KE+KN RLAM+ FMGM+ QE + G+
Sbjct:    4 VCAVALLAGSACAFVPSSFSGSALQAAVARPATMSMSVDAMLGADVEVGGV----FDPAGFSKDESKLAKYRAVELKHGRISMLACLGMWVQSAGIHMPDPVFSE-SKPIDAFFKVLSERPAAAIQVLLAITWLETVASKGDVGKEPGDVGNFGDNFKPADEADYAALQLKELKNGRLAMMGFMGMLVQEALTGQ 193          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835Z975_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z975_9STRA)

HSP 1 Score: 134 bits (336), Expect = 5.490e-34
Identity = 87/206 (42.23%), Postives = 127/206 (61.65%), Query Frame = 3
Query:  192 ANKVAALALLAGSASAFIAP-ALPTRAVTS--RASTAVRMSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAMLAVLGVIVQYF-VQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPG---NYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENI 788
            A+ + ALA +AG+ASAF+AP A    AV +  +AS+ V MS  D + G   ETGG     +DP   A  E  L KY+  ELK+GR++MLA LG+ VQ   + +PDPVFS+ +KP+ AF +VL+ERP A +Q+ L +  L+ +  +     EPG   N+G    PA + ++A L++KE+KN RLAM+  MGM+ QE + G+     +
Sbjct:    3 ASTIVALAAMAGTASAFVAPSAFNGVAVQAPVKASSTVVMSA-DAMIGADVETGGI----FDPANFAKDEGKLAKYRAVELKHGRISMLACLGMWVQSAGIHMPDPVFSE-SKPIDAFFKVLSERPAAAIQVLLAITWLETVAVKGDVGKEPGDVGNFGDNFKPADEGDYAALQLKELKNGRLAMMGIMGMLLQEALTGQSVFAQL 202          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: A0A835YT25_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT25_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.870e-31
Identity = 85/204 (41.67%), Postives = 116/204 (56.86%), Query Frame = 3
Query:  201 VAALALLAGSASAFIAPALPTRAVTSRASTAVRMSLLDGVFGGTFETGGE-ECAPWDPLGLASSEK--LLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNL--IWEDSESSEPGNYGF---GIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIENI 788
            VA LAL+AGS SAF+  A     V SR++  V M L  G   G    G + E A WDPLG  +++    +  Y+  ELK+GRVAMLA LG I Q +  LPDPVFSQ A+P  A  QV AERP A+ QI L +   + +    +      PG+  +    + P+  E +  ++++E+KN RLAM+A  G   QE + G+GPIE I
Sbjct:    6 VAGLALVAGSVSAFVQHAPLRTGVVSRSAGPV-MKLGPG---GEGLVGSDLELATWDPLGFTNNQNPDTINWYRAAELKHGRVAMLAALGEIFQSYYHLPDPVFSQSARPWDALQQVYAERPLAVAQILLAIFACEAIGQAQQAKPGQAPGDLNWDPLNLKPSDPETWEKVQLRELKNGRLAMMAIAGFFVQENLTGQGPIEQI 205          
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Match: FCP_CHAMQ (Fucoxanthin-chlorophyll a-c binding protein, chloroplastic n=1 Tax=Chattonella marina var. antiqua TaxID=859642 RepID=FCP_CHAMQ)

HSP 1 Score: 114 bits (284), Expect = 2.390e-26
Identity = 77/200 (38.50%), Postives = 111/200 (55.50%), Query Frame = 3
Query:  213 ALLAGSASAFIAPALPTRAVTSRASTAVRM-SLLDGVFGGTFETGGEECAPWDPLGLASSEK--LLKKYQIGELKNGRVAMLAVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILDNLIWEDSESSEPGNYG-------FGIFPASDEEFADLRMKEIKNARLAMIAFMGMIAQELVNGKGPIE 782
            AL+ GSASAF+APA       S  + ++++ S  +G+ G   E        +DPLG  ++     L+ Y+  ELK+GRVAMLA LG +VQ F  LPDPVFS+ AKP  A  +V  ERP A +QI L +   + +    +  ++PG            +  +++E F   +++E+KN RLAMIA   MI QE + G G IE
Sbjct:    9 ALMVGSASAFLAPAQFNSVAKSSGALSMKLGSSAEGLIGSDLEL-----PEFDPLGFTNNPAPGALEWYRAAELKHGRVAMLAALGQLVQSFYHLPDPVFSESAKPWQALVKVCNERPLAAVQIGLAIFACEAI--GQANQAKPGQAAGDLGWDPLNLRGSNEEIFERAQLRELKNGRLAMIAITAMIVQENLTGYGVIE 201          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1664.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDP1_9STRA7.240e-4749.24Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A835ZHX7_9STRA7.460e-4746.35Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835Z571_9STRA3.050e-4547.89Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A0G4FFG9_VITBC2.640e-4044.28Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
W7TXE6_9STRA3.220e-4044.56Light harvesting complex protein n=3 Tax=Monodopsi... [more]
A0A835ZIK7_9STRA5.570e-3848.57Chlorophyll a/b-binding protein domain-containing ... [more]
A0A835YR33_9STRA7.410e-3541.54Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835Z975_9STRA5.490e-3442.23Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835YT25_9STRA2.870e-3141.67Light harvesting complex protein n=2 Tax=Tribonema... [more]
FCP_CHAMQ2.390e-2638.50Fucoxanthin-chlorophyll a-c binding protein, chlor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1664contigP-wetherbeei_contig1664:354..2822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr44733
PFAMsChloroa_b-bind
Model size1052
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.7e-19
EggNOG OGs2A0A8@1|root,2RXY6@2759|Eukaryota,2XETV@2836|Bacillariophyta
Descriptionfucoxanthin chlorophyll a c protein
Cds size498
COG categoryP
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1664.1.2prot_P-wetherbeei_contig1664.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1664 609..2523 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.7866518-UTR-P-wetherbeei_contig1664:353..6081683186092.7866518-UTR-P-wetherbeei_contig1664:353..608Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1664 354..608 -
1683186092.8504648-UTR-P-wetherbeei_contig1664:2523..28221683186092.8504648-UTR-P-wetherbeei_contig1664:2523..2822Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1664 2524..2822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186092.7982438-CDS-P-wetherbeei_contig1664:608..6591683186092.7982438-CDS-P-wetherbeei_contig1664:608..659Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1664 609..659 -
1683186092.805834-CDS-P-wetherbeei_contig1664:886..9131683186092.805834-CDS-P-wetherbeei_contig1664:886..913Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1664 887..913 -
1683186092.8133104-CDS-P-wetherbeei_contig1664:1132..12701683186092.8133104-CDS-P-wetherbeei_contig1664:1132..1270Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1664 1133..1270 -
1683186092.820578-CDS-P-wetherbeei_contig1664:1475..16071683186092.820578-CDS-P-wetherbeei_contig1664:1475..1607Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1664 1476..1607 -
1683186092.8280935-CDS-P-wetherbeei_contig1664:1917..19531683186092.8280935-CDS-P-wetherbeei_contig1664:1917..1953Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1664 1918..1953 -
1683186092.8354766-CDS-P-wetherbeei_contig1664:2179..22421683186092.8354766-CDS-P-wetherbeei_contig1664:2179..2242Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1664 2180..2242 -
1683186092.8431084-CDS-P-wetherbeei_contig1664:2472..25231683186092.8431084-CDS-P-wetherbeei_contig1664:2472..2523Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1664 2473..2523 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1664.1.2

>prot_P-wetherbeei_contig1664.1.2 ID=prot_P-wetherbeei_contig1664.1.2|Name=mRNA_P-wetherbeei_contig1664.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
MSLLDGVFGGTFETGGEECAPWDPLGLASSEKLLKKYQIGELKNGRVAML
AVLGVIVQYFVQLPDPVFSQGAKPLAAFSQVLAERPTALLQIFLGVGILD
NLIWEDSESSEPGNYGFGIFPASDEEFADLRMKEIKNARLAMIAFMGMIA
QELVNGKGPIENILG*
back to top

mRNA from alignment at P-wetherbeei_contig1664:354..2822-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1664.1.2 ID=mRNA_P-wetherbeei_contig1664.1.2|Name=mRNA_P-wetherbeei_contig1664.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2469bp|location=Sequence derived from alignment at P-wetherbeei_contig1664:354..2822- (Phaeothamnion wetherbeei SAG_119_79)
GTCCCTCCTCTTTGGCTTCGCGGAACTTGCAAGCGGGTCGCCTCCCTCAC AGCTGTTTGATATCTCTTCCGCTACCGAAGAACCATGGAATGTGACGTTT GCTTGCTGGCCCGCCCCTTTCTTCCACCCGTCTGAGCGAAAAGCGCACCT CCCTTTTCTGCTTTTACATCTTATCATTGGGCTCCACACAGGCAAACAAG GTCGCTGCCCTCGCCCTGCTGGCCGGCTCCGCATCGGCGTTCATCGCCCC GGCTCTTCCTACTCGTGCCGTGACCAGCCGCGCGTCGACTGCCGTGCGCA TGTCGCTGCTGGACGGCGTCTTTGGCGGCACCTTTGAGACAGGGGGCGAG GTGAGCTTGCTGGAAATTTCCTCTCCTTCGCCCCTTTGTATGCTCTTCCT TCCTTCATGCAGCGCCTTTTCTAAATCGCTTTTGTTGCCGCCGTTTGCAT CCAGTTCCTTGCCGCTGGCCCCTCCTGACCTTGCTAATTTCCATATGTTC CCCTTCGTACGGCGCCGCCGATGTTCCTGTCACCATCGTTGCACCACTGC TTTCCACTCCCTCCCGTCCGACCTTTTCAGGAGTGCGCGCCGTGGGACCC GCTCGGGCTCGCCAGCAGCGAGAAGCTCCTTAAGAAATACCAGGCAGGTT CAGCCAGCCGGTCGACCGACTGGTCCTTCAAATCCTTCAACTTTCTTTTG GATCCTTTTCAGTTCCATGGGCAACTTGATGCTTCGTTGTTGCGCAGCTT GAGCCAAAGCGGCGGACTGCTCGCCGGCGAGACATAGGCGCAGTTTCCCT ACCATCATCTATCCTCCTCTCTCCCTCCATTTCGTTCCTCCTTCTACATT CCTCCCTTTTCCACATCAGATCGGGGAGCTGAAGAACGGGCGTGTGGCCA TGCTCGTGAGTTAAAAAGTTGGCTTCACGTTGGCGGCCGTCTAGTCGGGG CAGAAGCGTCACACATCCGTTCGGTCGCTTTCGCCACACCCAGCTTCCAC CCGCCTTTCATTCTCGACCACTCTTCGTTTCGACGGACTGTAGCTCGCAC TCTTGCCCCCTTTGCGCCGGCCAAGACTTGCCATTCCTGCTTTTTTCATT TGGGACGCTGACTCTGTTTCGCTCATCCGTCTCTCCCGTAATGCTTTCCT CTTCCGCTGCCCGTCCGCTCGCTCTCCCGTCTATCCCCCTTACCGCCCTA AAACAAATCAAACAGGCCGTTCTGGGTGTCATCGTGCAGTACTTCGTGCA GCTGCCCGATCCGGTCTTTTCTCAGGGCGCCAAGCCGCTCGCCGCCTTCT CGCAGGTCCTCGCCGAGCGTCCGACCGCCCTCCTCCAGATCTTCCTGGTG AGTGCGACCGGCCCGAGAGAGAAGGAACGCGTGAATCGGAATCGTCGCGC TGCTGCCGCCTCTTTAGTAACTGACTTTTCATGCAGAAGCTAACGTCATG CCTGCCCGCCCGTCTGTTGCGCACCCGTAACGTGCGCCCGCCGCTGCACC CTGTCACGGCCGCCCGTCGGATTTTTCTTGTATTGCATTTCTTTCTTGGC AGGGCGTGGGCATCCTCGACAACCTGATCTGGGAGGACTCGGAGTCGTCC GAGCCGGGCAACTACGGCTTCGGCATCTTCCCGGCCTCCGACGAGGAGTT CGCTGACCTCCGCATGAAGGAGATCAAGAACGCCCGCCTCGTGAGTTTTT GGCTGGCCTTCCCTGCACTTGGTCGCGGGCGGCGCTGCGGTGTCTTCCTC AGTCTGTCATCCTTCCCGCGCGCGGCGCTCTAACGAATTTTCCTCTCACC ATCGCCGCCGCCACTACCGCCGCTACCGTTTCGTCCTCGAATCTTTCCTT TTTTGTGCGTCGCCGCTCGCTACTGCGCCCAATCGTTCTGCGCCCTCCTT CCCCGGCAGGCTATGATCGCCTTCATGGGCATGATCGTGAGTCAGGCAGT CCCTCTTCGGTTCTCCTAAGTTTTATTATCTTGCGCGCTGTTTTGGGTTT ACGACATTATATCCTCTTCTCCCTTTCGCTAAGCGGGTGGATGCTGCTGT TTGACCAGTTGCTGGCACTTTGCCGACACCAGTCTCAACCGCCCCACCTT GTGGGTGACGGCGCGCTACCGCCACTAACCGCTCATTTCCCACCTTCCTT CGCCCACGACCAGGCGCAAGAACTCGTCAATGGGAAGGGGCCGATCGAGA ACATTCTCGGTTAACTGCGCTATTTTGAAAGAGCTTGTTTATTGAGCGGG CAGCGGCTGCGATCGCGACCAAGCGGTGGCAGCACGATGCGTCGCTGGGC CGCCAGGCAGGGTGAGGGAAAGGACAAAAAGAGAGGACGAGACCGATCTC CAACTGTGCAGAAATATGTGCGATGAAGCGGGGCCAGGGTCGGTGGCATG TAGGCTGGCTGCAGGGGGGAAGGTGATGGCCGCAGCGGCGCCGCCCAGGA AAAGCGAGAGCAAGGAAAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1664:354..2822-

>mRNA_P-wetherbeei_contig1664.1.2 ID=mRNA_P-wetherbeei_contig1664.1.2|Name=mRNA_P-wetherbeei_contig1664.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig1664:354..2822- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCTGCTGGACGGCGTCTTTGGCGGCACCTTTGAGACAGGGGGCGA
GGAGTGCGCGCCGTGGGACCCGCTCGGGCTCGCCAGCAGCGAGAAGCTCC
TTAAGAAATACCAGATCGGGGAGCTGAAGAACGGGCGTGTGGCCATGCTC
GCCGTTCTGGGTGTCATCGTGCAGTACTTCGTGCAGCTGCCCGATCCGGT
CTTTTCTCAGGGCGCCAAGCCGCTCGCCGCCTTCTCGCAGGTCCTCGCCG
AGCGTCCGACCGCCCTCCTCCAGATCTTCCTGGGCGTGGGCATCCTCGAC
AACCTGATCTGGGAGGACTCGGAGTCGTCCGAGCCGGGCAACTACGGCTT
CGGCATCTTCCCGGCCTCCGACGAGGAGTTCGCTGACCTCCGCATGAAGG
AGATCAAGAACGCCCGCCTCGCTATGATCGCCTTCATGGGCATGATCGCG
CAAGAACTCGTCAATGGGAAGGGGCCGATCGAGAACATTCTCGGTTAA
back to top