prot_P-wetherbeei_contig1628.1.2 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1628.1.2
Unique Nameprot_P-wetherbeei_contig1628.1.2
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length143
Homology
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A835ZG91_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG91_9STRA)

HSP 1 Score: 168 bits (425), Expect = 7.800e-50
Identity = 92/145 (63.45%), Postives = 110/145 (75.86%), Query Frame = 0
Query:    1 MGAPPGAPQFALGPLAPPTPPISALPAF-PGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEM-----DDGREAATGLRKVSQEEILEAQQQSDADSAPHRVEWEF 139
            MG PP  P     PL  P PP+ A P+F PGAASL+EQLD+ ++VVLRDGRHLVG+MRSYDQF+NIVLEDTHERHFVG LYGDIPLGLYIVRGDSVVL+GE+              L++V+ +EIL+AQQ+SD D  P +VEW+F
Sbjct:   90 MGPPPQFPXXGAMPLGRPXPPVIAPPSFFPGAASLHEQLDKVVMVVLRDGRHLVGLMRSYDQFSNIVLEDTHERHFVGALYGDIPLGLYIVRGDSVVLLGEVAAEXXXXXXXXXALLKRVTADEILQAQQESDVD--PFKVEWDF 232          
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: D8LL00_ECTSI (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL00_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.250e-47
Identity = 76/113 (67.26%), Postives = 98/113 (86.73%), Query Frame = 0
Query:   28 FPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATGLRKVSQEEILEAQQQSDADSAPH-RVEWEF 139
            FPG+ASL+EQLD+R++VVLRDGRHLVGVMRSYDQF+NIVLEDTHERHFV D++GDI LGLY+VRGD++VLMGE+D+ RE    LR+VS +EI+EAQQ++ A+     +++W F
Sbjct:   22 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEERQDAKLDWLF 134          
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A6H5JKJ0_9PHAE (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKJ0_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.550e-46
Identity = 77/113 (68.14%), Postives = 98/113 (86.73%), Query Frame = 0
Query:   28 FPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATGLRKVSQEEILEAQQQSDA-DSAPHRVEWEF 139
            FPG+ASL+EQLD+R++VVLRDGRHLVGVMRSYDQF+NIVLEDTHERHFV D++GDI LGLY+VRGD++VLMGE+D+ RE    LR+VS +EI+EAQQ++ A D    +++W F
Sbjct:  129 FPGSASLFEQLDKRVMVVLRDGRHLVGVMRSYDQFSNIVLEDTHERHFVRDIFGDISLGLYLVRGDALVLMGELDETREETPRLRRVSADEIIEAQQEASAEDRQDAKLDWLF 241          
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A4D9CWQ3_9STRA (Sm domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWQ3_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.920e-41
Identity = 84/140 (60.00%), Postives = 106/140 (75.71%), Query Frame = 0
Query:    2 GAPPGAPQFALGPLAPPTPPISALPAF-PGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATGLRKVSQEEILEAQQQSDADSAPHRVEWEFD 140
            GAPP  P + L    PP P ++ LP + PGAASL EQLDRR+LVVLRDGR+LVGV+RS+DQF+N+VLEDT+ERH V   YGD+PLGLY+VRGD+VVL+GE++  RE  + L KV+ EEILE  Q S    A  +VEW+F+
Sbjct:  218 GAPPPGPHYML----PPRPFVAVLPDYLPGAASLVEQLDRRVLVVLRDGRNLVGVLRSFDQFSNMVLEDTYERHVVDGKYGDLPLGLYLVRGDAVVLLGEVEAEREGKS-LEKVTTEEILELLQGSGEAGA--KVEWDFE 350          
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A7S2XVC4_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVC4_9STRA)

HSP 1 Score: 137 bits (344), Expect = 4.560e-39
Identity = 68/114 (59.65%), Postives = 94/114 (82.46%), Query Frame = 0
Query:   28 FPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATGL-RKVSQEEILEAQQQSDADSAPHRVEWEFD 140
            F G  SL EQLD+++LVVLRDGRHLVGV+RS+DQF+N+V+E+THERH V  ++GDIPLGLYIVRGD+VVL+GE+D+ +E+++   R+VS EEIL AQ+ ++  +   +V W+FD
Sbjct:    5 FAGGMSLVEQLDKKILVVLRDGRHLVGVLRSFDQFSNMVMENTHERHVVEGIFGDIPLGLYIVRGDNVVLLGEVDEEKESSSQHPRRVSAEEILHAQRNTEDKT---KVAWDFD 115          
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: W4GB80_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GB80_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.610e-38
Identity = 68/121 (56.20%), Postives = 91/121 (75.21%), Query Frame = 0
Query:   22 ISALPAFPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAA-TGLRKVSQEEILEAQQQSDADSAPH-RVEWEFD 140
            ++++  FPG +SL EQLD++LLVVLRDGRHLVG++RS+DQF+NIVLE T ERH VG+ Y DIPLGLYI+RG+++VLMGE+D  +EA    L + S EE+L A+ + +    P  R  W FD
Sbjct:    1 MNSMTGFPGVSSLVEQLDKQLLVVLRDGRHLVGIIRSFDQFSNIVLEGTCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAEDVNLTRKSAEEVLTAEMEQNEQGLPTVRDAWNFD 121          
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A7S2CG66_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG66_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.240e-38
Identity = 67/124 (54.03%), Postives = 93/124 (75.00%), Query Frame = 0
Query:   17 PPTPPISALPAFPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATGLRKVSQEEILEAQQQSDADSAPHRVEWEFD 140
            PP  P       PGAASL +QLD+R+L+VLRDGRHLVG++RS+DQF+N+VLEDTHERH    L  D+ LGL+IVRGD++VL+GE+D  +EA++GL     + +LEA++    +SA  +VEW+F+
Sbjct:    4 PPMEPTQMGLLLPGAASLVDQLDKRILIVLRDGRHLVGILRSFDQFSNMVLEDTHERHVANGLRSDMALGLFIVRGDNIVLLGELDPEKEASSGLIDAEPDVVLEAER----NSAFTKVEWDFE 123          
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A6G0XJC2_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XJC2_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.200e-38
Identity = 66/116 (56.90%), Postives = 88/116 (75.86%), Query Frame = 0
Query:   27 AFPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATG--LRKVSQEEILEAQQQSDADSAPHRVEWEFD 140
            AFPG  SL EQLD+++LVVLRDGRHLVG++RS+DQ++NIVLE+T ERH VG+ Y DIPLGLYI+RG+++VLMGE+D  +EAA    +RK ++E +    +Q +   A  R  W FD
Sbjct:    3 AFPGVTSLVEQLDKQMLVVLRDGRHLVGMIRSFDQYSNIVLEETCERHVVGNTYCDIPLGLYIIRGENIVLMGELDQAKEAADENLVRKTAEEVLTAEMEQQEQGQATVRDTWNFD 118          
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A485L216_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L216_9STRA)

HSP 1 Score: 134 bits (338), Expect = 4.460e-38
Identity = 69/116 (59.48%), Postives = 87/116 (75.00%), Query Frame = 0
Query:   27 AFPGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAAT-GLRKVSQEEILEAQQQSDADSAPH-RVEWEFD 140
            AFPG  SL EQ+D+++LVVLRDGRHLVG++RS+DQF+NIVLEDT ERH VG  Y DIPLGLYI+RG+++VLMGE+D  +EAA   L + S EE+L A+ +      P  R  W FD
Sbjct:    4 AFPGVTSLVEQVDKQMLVVLRDGRHLVGIIRSFDQFSNIVLEDTCERHVVGTTYCDIPLGLYIIRGENIVLMGELDQEKEAADENLTRKSPEEVLTAEMEQMEQGQPTVRDAWNFD 119          
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Match: A0A7R9YFM7_9STRA (U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFM7_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.810e-37
Identity = 70/113 (61.95%), Postives = 83/113 (73.45%), Query Frame = 0
Query:   29 PGAASLYEQLDRRLLVVLRDGRHLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGEMDDGREAATGLRKVSQEEILEAQQ-QSDADSAPHRVEWEFD 140
            PGAASL E LDRRLLVVLRDGRHLVG+MRSYDQFAN+VLE+T ER    D Y + PLGLYIVRGDSVVL+GE     EA  GL+KVS EEI E ++ +++        +W F+
Sbjct:    9 PGAASLMESLDRRLLVVLRDGRHLVGIMRSYDQFANMVLEETVEREVFQDCYAETPLGLYIVRGDSVVLLGETHQDGEARMGLQKVSLEEIAEKRKLENEETGGAGSADWNFE 121          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1628.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZG91_9STRA7.800e-5063.45U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=T... [more]
D8LL00_ECTSI1.250e-4767.26U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A6H5JKJ0_9PHAE1.550e-4668.14U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=E... [more]
A0A4D9CWQ3_9STRA4.920e-4160.00Sm domain-containing protein n=2 Tax=Monodopsidace... [more]
A0A7S2XVC4_9STRA4.560e-3959.65U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=F... [more]
W4GB80_9STRA1.610e-3856.20U6 snRNA-associated Sm-like protein LSm1 n=2 Tax=A... [more]
A0A7S2CG66_9STRA3.240e-3854.03U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=D... [more]
A0A6G0XJC2_9STRA4.200e-3856.90U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=A... [more]
A0A485L216_9STRA4.460e-3859.48U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=A... [more]
A0A7R9YFM7_9STRA1.810e-3761.95U6 snRNA-associated Sm-like protein LSm1 n=1 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 32..100
e-value: 1.6E-18
score: 77.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 34..99
e-value: 2.0E-16
score: 59.4
NoneNo IPR availableGENE3D2.30.30.100coord: 31..138
e-value: 5.5E-32
score: 112.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..142
NoneNo IPR availablePANTHERPTHR15588:SF8U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM1coord: 28..129
IPR044642U6 snRNA-associated Sm-like protein Lsm1/8PANTHERPTHR15588LSM1coord: 28..129
IPR034104Sm-like protein Lsm1CDDcd01728LSm1coord: 28..101
e-value: 1.37689E-43
score: 136.107
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 33..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1628contigP-wetherbeei_contig1628:426..1094 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1628.1.2mRNA_P-wetherbeei_contig1628.1.2Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1628 124..1197 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1628.1.2 ID=prot_P-wetherbeei_contig1628.1.2|Name=mRNA_P-wetherbeei_contig1628.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
MGAPPGAPQFALGPLAPPTPPISALPAFPGAASLYEQLDRRLLVVLRDGR
HLVGVMRSYDQFANIVLEDTHERHFVGDLYGDIPLGLYIVRGDSVVLMGE
MDDGREAATGLRKVSQEEILEAQQQSDADSAPHRVEWEFDQA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR044642PTHR15588
IPR034104Lsm1
IPR010920LSM_dom_sf