prot_P-wetherbeei_contig12202.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig12202.1.1
Unique Name	prot_P-wetherbeei_contig12202.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	229

Homology

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BLAST of mRNA_P-wetherbeei_contig12202.1.1 vs. uniprot
Match: A0A6H5KRS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS0_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 7.790e-68
Identity = 113/163 (69.33%), Postives = 141/163 (86.50%), Query Frame = 0

Query:    8 VKAQVVFYFSRENLKTDGNLVSKMNADLCIPLHVVSQLSKIKELTEDEALIAESVKDSSVCAVTPAGIKPTIRSERNTIILREIPSNTPVETVREIFTGEGMAPVKQLRSDVGDTWFVYMETEREAMATILALRDKTFDGKPVKARLKSENILRSFFPVPVAA 170
            +K QV FYFS++NL++DG LVSKMNA +C+P+ V++Q  KI++LT D ALI ESVKDS+VC VTP GIKP+I+ ERNTIILREIPS+TP E +R+IFTG+G+AP+K +RSDVGDTWFV ME+E +A+ TILALR KTF+GK +KARLKSEN+LRSFFPVP AA
Sbjct:   78 LKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSDTPQEKIRKIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALTTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAA 240

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BLAST of mRNA_P-wetherbeei_contig12202.1.1 vs. uniprot
Match: D8LL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL21_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 9.490e-68
Identity = 113/163 (69.33%), Postives = 139/163 (85.28%), Query Frame = 0

Query:    8 VKAQVVFYFSRENLKTDGNLVSKMNADLCIPLHVVSQLSKIKELTEDEALIAESVKDSSVCAVTPAGIKPTIRSERNTIILREIPSNTPVETVREIFTGEGMAPVKQLRSDVGDTWFVYMETEREAMATILALRDKTFDGKPVKARLKSENILRSFFPVPVAA 170
            +K QV FYFS++NL++DG LVSKMNA +C+P+ V++Q  KI++LT D ALI ESVKDS+VC VT  GIKP+I+ ERNTIILREIPS TP E +REIFTG+G+AP+K +RSDVGDTWFV ME+E +A+ TILALR KTF+GK +KARLKSEN+LRSFFPVP AA
Sbjct:   73 LKKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTSDGIKPSIKQERNTIILREIPSETPQEKIREIFTGDGVAPIKSIRSDVGDTWFVTMESEDDALNTILALRGKTFEGKAIKARLKSENLLRSFFPVPTAA 235

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BLAST of mRNA_P-wetherbeei_contig12202.1.1 vs. uniprot
Match: A0A7S4DKN7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKN7_HETAK)

HSP 1 Score: 211 bits (537), Expect = 2.520e-65
Identity = 103/169 (60.95%), Postives = 135/169 (79.88%), Query Frame = 0

Query:    4 IRGQVKAQVVFYFSRENLKTDGNLVSKMNADLCIPLHVVSQLSKIKELTEDEALIAESVKDSSVCAVTPAGIKPTIRSERNTIILREIPSNTPVETVREIFTGEGMAPVKQLRSDVGDTWFVYMETEREAMATILALRDKTFDGKPVKARLKSENILRSFFPVPVAAAD 172
            +R  VK Q+ FYFSR+NL+TDG LVSKMNA++ +P+ V+++ +KI+ LT +  +I  +++ S VC VT   IKP  ++ERNTIILREIPSNTP E VREIFTGEGMAP+  +RSDVGDTWFV + +E  A+A  LALR++ F+G+PVKARLKSEN+LR+F+PVP AAAD
Sbjct:   36 LREAVKKQIEFYFSRQNLQTDGFLVSKMNANMEVPITVIAEFAKIRALTREPDVIRAALEGSKVCIVTEDAIKPNFKTERNTIILREIPSNTPEEKVREIFTGEGMAPITNIRSDVGDTWFVTLGSEAAAVAACLALRERAFEGRPVKARLKSENLLRAFYPVPQAAAD 204

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BLAST of mRNA_P-wetherbeei_contig12202.1.1 vs. uniprot
Match: A0A836CHL1_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL1_9STRA)

HSP 1 Score: 200 bits (508), Expect = 6.120e-61
Identity = 99/166 (59.64%), Postives = 130/166 (78.31%), Query Frame = 0

Query:    8 VKAQVVFYFSRENLKTDGNLVSKMNADLCIPLHVVSQLSKIKELTEDEALIAESVKDSSVCAVTPAGIKPTIRSERNTIILREIPSNTP-------VETVREIFTGEGMAPVKQLRSDVGDTWFVYMETEREAMATILALRDKTFDGKPVKARLKSENILRSFFPV 166
            ++ QV FYFS+ NL++DG LVS+M+A  C+P+ V++Q +K++ LT DE  IA +V +SSVC VTP GI+P +++ER+TIILREIPS+TP          VRE+F GEGMAP++ +RSDVG TWFV   +E +AMATILALR +TF+GKPVKARLK EN+LRSFFPV
Sbjct:   57 LRQQVEFYFSKANLQSDGFLVSRMDASGCVPISVIAQFAKVRALTTDEGAIAAAVANSSVCTVTPQGIRPNLKAERHTIILREIPSDTPPAKASCCCTCVRELFAGEGMAPIRGVRSDVGATWFVTCASEADAMATILALRSRTFEGKPVKARLKGENLLRSFFPV 222

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BLAST of mRNA_P-wetherbeei_contig12202.1.1 vs. uniprot
Match: A0A0W8DNS3_PHYNI (Ammonium Transporter (Amt) Family n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DNS3_PHYNI)

HSP 1 Score: 182 bits (463), Expect = 9.840e-53
Identity = 93/166 (56.02%), Postives = 126/166 (75.90%), Query Frame = 0

Query:    2 ADIRGQVKAQVVFYFSRENLKTDGNLVSKMNADLCIPLHVVSQLSKIKELTEDEALIAESVKDSSVCAVTPA--GIKPTIRSERNTIILREIPSNTPVETVREIFTGEGMAPVKQLRSDVGDTWFVYMETEREAMATILALRDKTFDGKPVKARLKSENILRSFFP 165
            A+++  +K QV FYFSR NL  D  LVS+MN+ + +P+ V+   SKIK+LT+D+AL+ ++V+DS+VC++  +   IKP I+SER TIILREIPS+T  E V  IF  EG   V  +RSDVGDTWFV M +E EA++T+LALR KTF+G P+KARLKSEN+L+SF+P
Sbjct:   12 AELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAIF--EGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVLKSFYP 175

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BLAST of mRNA_P-wetherbeei_contig12202.1.1 vs. uniprot
Match: A0A6G0W682_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W682_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.790e-51
Identity = 99/170 (58.24%), Postives = 123/170 (72.35%), Query Frame = 0

Query:    4 IRGQVKAQVVFYFSRENLKTDGNLVSKMNADLCIPLHVVSQLSKIKELTEDEALIAESVKDSSVCAVTPAG--IKPTIRSERNTIILREIPSNTPVETVREIFTGEGMAPVKQLRSDVGDTWFVYMETEREAMATILALRDKTFDGKPVKARLKSENILRSFFPVPVAAA 171
            ++  VK QV FYFS+ NL  D  LVS+MNA + +PL V+   SKIK+LTED AL+ E++KDS VC+++P G  IKP I+SERNTIILREIPS T  + V  IF G G   V  +RSDVGDTWFV M +E  A+ T+LALR K+F+  P+KARLKSENILRSF P   +AA
Sbjct:   11 LKDAVKNQVEFYFSKANLANDSFLVSQMNAQMYVPLDVILGFSKIKQLTEDAALVVEAIKDSKVCSLSPEGDAIKPNIKSERNTIILREIPSATEPKVVEAIFDGCGT--VTSVRSDVGDTWFVTMASEEVAVNTLLALRSKSFNDAPIKARLKSENILRSFIPTDTSAA 178

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BLAST of mRNA_P-wetherbeei_contig12202.1.1 vs. uniprot
Match: G4YGZ8_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4YGZ8_PHYSP)

HSP 1 Score: 182 bits (461), Expect = 2.190e-50
Identity = 94/166 (56.63%), Postives = 124/166 (74.70%), Query Frame = 0

Query:    2 ADIRGQVKAQVVFYFSRENLKTDGNLVSKMNADLCIPLHVVSQLSKIKELTEDEALIAESVKDSSVCAVTPA--GIKPTIRSERNTIILREIPSNTPVETVREIFTGEGMAPVKQLRSDVGDTWFVYMETEREAMATILALRDKTFDGKPVKARLKSENILRSFFP 165
            A+++  +K QV FYFSR NL  D  LVS+MN+ + +P+ V+   SKIK+LT+D AL+ E+V+DS++C++  A   IKP I+SER TIILREIPS+T  E V  IF G G   V  +RSDVGDTWFV M TE EA++T+LALR KTF+G  +KARLKSEN+L+SF+P
Sbjct:   28 AELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDAALLVEAVQDSTICSLNSAKDAIKPNIKSERTTIILREIPSSTKPEEVEAIFDGCGK--VASVRSDVGDTWFVTMNTEAEAVSTLLALRSKTFNGAAIKARLKSENVLKSFYP 191

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BLAST of mRNA_P-wetherbeei_contig12202.1.1 vs. uniprot
Match: A0A0W8C538_PHYNI (La-related protein 4 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C538_PHYNI)

HSP 1 Score: 182 bits (463), Expect = 1.210e-49
Identity = 93/166 (56.02%), Postives = 126/166 (75.90%), Query Frame = 0

Query:    2 ADIRGQVKAQVVFYFSRENLKTDGNLVSKMNADLCIPLHVVSQLSKIKELTEDEALIAESVKDSSVCAVTPA--GIKPTIRSERNTIILREIPSNTPVETVREIFTGEGMAPVKQLRSDVGDTWFVYMETEREAMATILALRDKTFDGKPVKARLKSENILRSFFP 165
            A+++  +K QV FYFSR NL  D  LVS+MN+ + +P+ V+   SKIK+LT+D+AL+ ++V+DS+VC++  +   IKP I+SER TIILREIPS+T  E V  IF  EG   V  +RSDVGDTWFV M +E EA++T+LALR KTF+G P+KARLKSEN+L+SF+P
Sbjct:  267 AELKEAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVGAIF--EGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAPIKARLKSENVLKSFYP 430

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BLAST of mRNA_P-wetherbeei_contig12202.1.1 vs. uniprot
Match: A0A2P4XI52_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XI52_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.270e-49
Identity = 91/166 (54.82%), Postives = 124/166 (74.70%), Query Frame = 0

Query:    2 ADIRGQVKAQVVFYFSRENLKTDGNLVSKMNADLCIPLHVVSQLSKIKELTEDEALIAESVKDSSVCAVTPA--GIKPTIRSERNTIILREIPSNTPVETVREIFTGEGMAPVKQLRSDVGDTWFVYMETEREAMATILALRDKTFDGKPVKARLKSENILRSFFP 165
            A+++  +K QV FYFSR NL  D  LVS+MN+ + +P+ V+   SKIK+LT++ AL+ E+V+DS++C++  +   IKP I+SER TIILREIPS+T  E V  IF  EG   V  +RSDVGDTWFV M +E EA++T+LALR KTF+G  +KARLKSEN+L+SF+P
Sbjct:   12 AELKQAIKRQVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDNTALLVEAVQDSTICSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEVEAIF--EGCGKVASVRSDVGDTWFVTMNSESEAVSTLLALRSKTFNGAAIKARLKSENVLKSFYP 175

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BLAST of mRNA_P-wetherbeei_contig12202.1.1 vs. uniprot
Match: H3GMU1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMU1_PHYRM)

HSP 1 Score: 179 bits (455), Expect = 1.410e-49
Identity = 91/166 (54.82%), Postives = 125/166 (75.30%), Query Frame = 0

Query:    2 ADIRGQVKAQVVFYFSRENLKTDGNLVSKMNADLCIPLHVVSQLSKIKELTEDEALIAESVKDSSVCAVTPA--GIKPTIRSERNTIILREIPSNTPVETVREIFTGEGMAPVKQLRSDVGDTWFVYMETEREAMATILALRDKTFDGKPVKARLKSENILRSFFP 165
            A+++  +K+QV FYFSR NL  D  LVS+MN+ + +P+ ++   SKIK+LT++ AL+ E+++DS+VC++  +   IKP I+SER TIILREIPS+T  E V  IF  EG   V  +RSDVGDTWFV M TE EA++T+LALR KTF+G  +KARLKSEN+L+SF+P
Sbjct:   12 AELKEAIKSQVEFYFSRANLANDAYLVSQMNSQMYVPVEIIINFSKIKQLTDNTALLVEAMQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTQPEEVEAIF--EGCGKVASVRSDVGDTWFVTMNTESEAVSTLLALRSKTFNGAAIKARLKSENVLKSFYP 175

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig12202.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig12202.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KRS0_9PHAE	7.790e-68	69.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LL21_ECTSI	9.490e-68	69.33	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A7S4DKN7_HETAK	2.520e-65	60.95	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A836CHL1_9STRA	6.120e-61	59.64	HTH La-type RNA-binding domain-containing protein ...	[more]
A0A0W8DNS3_PHYNI	9.840e-53	56.02	Ammonium Transporter (Amt) Family n=1 Tax=Phytopht...	[more]
A0A6G0W682_9STRA	1.790e-51	58.24	HTH La-type RNA-binding domain-containing protein ...	[more]
G4YGZ8_PHYSP	2.190e-50	56.63	Uncharacterized protein n=5 Tax=Phytophthora TaxID...	[more]
A0A0W8C538_PHYNI	1.210e-49	56.02	La-related protein 4 n=4 Tax=Phytophthora TaxID=47...	[more]
A0A2P4XI52_9STRA	1.270e-49	54.82	Uncharacterized protein n=1 Tax=Phytophthora palmi...	[more]
H3GMU1_PHYRM	1.410e-49	54.82	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 2..82 e-value: 1.8E-7 score: 36.4
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 8..63 e-value: 3.5E-12 score: 46.1
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 1..87 score: 14.944806
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 82..162 e-value: 4.7E-5 score: 25.4
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 2..81 e-value: 4.4E-15 score: 57.3
IPR045180	La domain containing protein	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 3..170
None	No IPR available	PANTHER	PTHR22792:SF131	LA-RELATED PROTEIN LARP4B	coord: 3..170
None	No IPR available	CDD	cd12430	RRM_LARP4_5_like	coord: 84..157 e-value: 1.64446E-26 score: 95.862
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 78..162
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 3..76

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig12202	contig	P-wetherbeei_contig12202:871..2028 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig12202.1.1	mRNA_P-wetherbeei_contig12202.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig12202 871..2028 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig12202.1.1 ID=prot_P-wetherbeei_contig12202.1.1|Name=mRNA_P-wetherbeei_contig12202.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=229bp
AADIRGQVKAQVVFYFSRENLKTDGNLVSKMNADLCIPLHVVSQLSKIKE
LTEDEALIAESVKDSSVCAVTPAGIKPTIRSERNTIILREIPSNTPVETV
REIFTGEGMAPVKQLRSDVGDTWFVYMETEREAMATILALRDKTFDGKPV
KARLKSENILRSFFPVPVAAADPAAAAAAAAAASAASADAYRMGPGAGQM
PLGPGGVGVVGGAGGGYMMGPMSPVLGMN

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006630	La_HTH
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR036388	WH-like_DNA-bd_sf
IPR045180	La_dom_prot
IPR035979	RBD_domain_sf
IPR036390	WH_DNA-bd_sf