mRNA_P-wetherbeei_contig9960.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9960.1.1
Unique NamemRNA_P-wetherbeei_contig9960.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9960.1.1 vs. uniprot
Match: D8LKU4_ECTSI (Formin-like 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKU4_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 7.130e-11
Identity = 54/149 (36.24%), Postives = 79/149 (53.02%), Query Frame = 1
Query:   25 LMSVAQADNIAIVLRALRRVGP----EQLGLALADWNSFPADELQLLHRCLPTDAELKVAAAFSGAVEELSPAERFLCAVAFGGVVAPERRLAALLLAEQFDGQLAR-IKAGLVTVMAAASQARGSARLRVILGRVLAIGNRLNAGTHK 456
            L+ V + +N+AI L+A RRVG      +L   L        ++LQ L  CLPT  EL+   AFSG    L  AE F  A+       P  +++A+L + QF G +A   ++ + T+  A  +A  S RL  +L +VL IGN LN GT++
Sbjct: 1130 LLDVNRGNNVAIGLKAFRRVGDVSELARLVSGLDPKEVLTTEDLQRLEGCLPTAQELRTVMAFSGPAAALGSAETFFRALR--DTPRPASKVSAVLFSRQFLGSVAGDAESRVETLRMACEEAMESDRLAAVLEKVLDIGNLLNEGTYQ 1276          
BLAST of mRNA_P-wetherbeei_contig9960.1.1 vs. uniprot
Match: A0A6G1CJE2_9ORYZ (Formin-like protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1CJE2_9ORYZ)

HSP 1 Score: 68.6 bits (166), Expect = 1.380e-10
Identity = 46/143 (32.17%), Postives = 81/143 (56.64%), Query Frame = 1
Query:   25 LMSVAQADNIAIVLRALRRVGPEQLGLALA-DWNSFPADELQLLHRCLPTDAELKVAAAFSGAVEELSPAERFLCAVAFGGVVAPERRLAALLLAEQFDGQLARIKAGLVTVMAAASQARGSARLRVILGRVLAIGNRLNAGT 450
            L+ + +A+N  I+L  ++   P+ +  ALA D +   AD+L+ L +  PT  E+++   +SG  E L   E+F   +     V  + R+ A  +  QF  Q+  ++  L+TV +A  + RGS +L+VI+ ++L +GN+LN GT
Sbjct:   58 LIDIRRANNTEIMLTKIKMPLPDMMSAALALDDSVLDADQLENLIKFCPTKEEMELLKNYSGDKETLGKCEQFFLELMKVPRVESKFRIFAFKI--QFQSQIRDVRKNLLTVSSACEELRGSEKLKVIMEKILFLGNKLNQGT 198          
BLAST of mRNA_P-wetherbeei_contig9960.1.1 vs. uniprot
Match: B8AR82_ORYSI (Formin-like protein n=1 Tax=Oryza sativa subsp. indica TaxID=39946 RepID=B8AR82_ORYSI)

HSP 1 Score: 66.6 bits (161), Expect = 7.820e-10
Identity = 45/143 (31.47%), Postives = 81/143 (56.64%), Query Frame = 1
Query:   25 LMSVAQADNIAIVLRALRRVGPEQLGLALA-DWNSFPADELQLLHRCLPTDAELKVAAAFSGAVEELSPAERFLCAVAFGGVVAPERRLAALLLAEQFDGQLARIKAGLVTVMAAASQARGSARLRVILGRVLAIGNRLNAGT 450
            L+ + +A+N  I+L  ++   P+ +  ALA D +   AD+L+ L +  PT  E+++   ++G  E L   E+F   +     V  + R+ A  +  QF  Q+  ++  L+TV +A  + RGS +L+VI+ ++L +GN+LN GT
Sbjct:  438 LIDLRRANNTEIMLTKIKMPLPDMMSAALALDDSVLDADQLENLIKFCPTKEEMELLKNYTGDKETLGKCEQFFLELMKVPRVESKFRIFAFKI--QFQSQIRDVRKNLLTVSSACEELRGSEKLKVIMEKILFLGNKLNQGT 578          
BLAST of mRNA_P-wetherbeei_contig9960.1.1 vs. uniprot
Match: FH12_ORYSJ (Formin-like protein 12 n=4 Tax=Oryza TaxID=4527 RepID=FH12_ORYSJ)

HSP 1 Score: 66.6 bits (161), Expect = 8.400e-10
Identity = 45/143 (31.47%), Postives = 81/143 (56.64%), Query Frame = 1
Query:   25 LMSVAQADNIAIVLRALRRVGPEQLGLALA-DWNSFPADELQLLHRCLPTDAELKVAAAFSGAVEELSPAERFLCAVAFGGVVAPERRLAALLLAEQFDGQLARIKAGLVTVMAAASQARGSARLRVILGRVLAIGNRLNAGT 450
            L+ + +A+N  I+L  ++   P+ +  ALA D +   AD+L+ L +  PT  E+++   ++G  E L   E+F   +     V  + R+ A  +  QF  Q+  ++  L+TV +A  + RGS +L+VI+ ++L +GN+LN GT
Sbjct: 1326 LIDLRRANNTEIMLTKIKMPLPDMMSAALALDDSVLDADQLENLIKFCPTKEEMELLKNYTGDKETLGKCEQFFLELMKVPRVESKFRIFAFKI--QFQSQIRDVRKNLLTVSSACEELRGSEKLKVIMEKILFLGNKLNQGT 1466          
BLAST of mRNA_P-wetherbeei_contig9960.1.1 vs. uniprot
Match: A0A0E0GY40_ORYNI (Formin-like protein n=5 Tax=Oryza TaxID=4527 RepID=A0A0E0GY40_ORYNI)

HSP 1 Score: 66.6 bits (161), Expect = 8.430e-10
Identity = 45/143 (31.47%), Postives = 81/143 (56.64%), Query Frame = 1
Query:   25 LMSVAQADNIAIVLRALRRVGPEQLGLALA-DWNSFPADELQLLHRCLPTDAELKVAAAFSGAVEELSPAERFLCAVAFGGVVAPERRLAALLLAEQFDGQLARIKAGLVTVMAAASQARGSARLRVILGRVLAIGNRLNAGT 450
            L+ + +A+N  I+L  ++   P+ +  ALA D +   AD+L+ L +  PT  E+++   ++G  E L   E+F   +     V  + R+ A  +  QF  Q+  ++  L+TV +A  + RGS +L+VI+ ++L +GN+LN GT
Sbjct: 1488 LIDLRRANNTEIMLTKIKMPLPDMMSAALALDDSVLDADQLENLIKFCPTKEEMELLKNYTGDKETLGKCEQFFLELMKVPRVESKFRIFAFKI--QFQSQIRDVRKNLLTVSSACEELRGSEKLKVIMEKILFLGNKLNQGT 1628          
BLAST of mRNA_P-wetherbeei_contig9960.1.1 vs. uniprot
Match: A0A8J5WKQ0_ZIZPA (FH2 domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WKQ0_ZIZPA)

HSP 1 Score: 63.5 bits (153), Expect = 8.260e-9
Identity = 44/143 (30.77%), Postives = 77/143 (53.85%), Query Frame = 1
Query:   25 LMSVAQADNIAIVLRALRRVGPEQLGLALA-DWNSFPADELQLLHRCLPTDAELKVAAAFSGAVEELSPAERFLCAVAFGGVVAPERRLAALLLAEQFDGQLARIKAGLVTVMAAASQARGSARLRVILGRVLAIGNRLNAGT 450
            L+ + +A+N  I+L  ++   P+ +  ALA D +   AD+++ L +  PT  E+ +   +SG  E L   E+F   +    V   E + +      QF  Q+  ++  L+TV +A  + RGS +L+VI+ ++L +GN LN GT
Sbjct:  118 LIDMRRANNTEIMLTKIKMPLPDMMSAALALDDSVLDADQVENLIKFCPTKEEMDLLKNYSGDKETLGKCEQFFLELM--KVPRIESKFSIFSFKIQFQSQIRDVRKNLLTVSSACEELRGSEKLKVIMQKILFLGNTLNQGT 258          
BLAST of mRNA_P-wetherbeei_contig9960.1.1 vs. uniprot
Match: M4F7M6_BRARP (Formin-like protein n=9 Tax=Brassica TaxID=3705 RepID=M4F7M6_BRARP)

HSP 1 Score: 60.1 bits (144), Expect = 1.460e-7
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   40 QADNIAIVLRALRRVGPEQLGLALADWNSFPADELQLLHRCLPTDAELKVAAAFSGAVEELSPAERFLCAVAFGGVVAPERRLAALLLAEQFDGQLARIKAGLVTVMAAASQARGSARLRVILGRVLAIGNRLNAGTHK 456
            +A N++I+LRAL  V  E++  A+ + N  P + LQ L +  PT  E      +SG V  L PAERFL  +    +    +R+ +LL       +++ IK  L T+  A  + R S     +L  VL  GNR+N GT +
Sbjct:  428 KAQNLSILLRALN-VTTEEVVEAIKEGNELPVELLQTLLKMAPTTEEELKLRLYSGDVNLLGPAERFLKILV--DIPFAFKRIESLLFMISLQEEVSGIKESLSTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFR 563          
BLAST of mRNA_P-wetherbeei_contig9960.1.1 vs. uniprot
Match: A0A6J0NB15_RAPSA (Formin-like protein n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0NB15_RAPSA)

HSP 1 Score: 59.7 bits (143), Expect = 1.990e-7
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 1
Query:   40 QADNIAIVLRALRRVGPEQLGLALADWNSFPADELQLLHRCLPTDAELKVAAAFSGAVEELSPAERFLCAVAFGGVVAPERRLAALLLAEQFDGQLARIKAGLVTVMAAASQARGSARLRVILGRVLAIGNRLNAGTHK 456
            +A N++I+LRAL  V  E++  A+ + N  P + LQ L +  PT  E      +SG V  L PAERFL  +    +    +R+ +LL       +++ IK  L T+  A  + R S     +L  VL  GNR+N GT +
Sbjct:  445 KAQNLSILLRALN-VTTEEVVDAIKEGNELPVELLQTLLKMAPTTEEELKLRLYSGDVNLLGPAERFLKILV--DIPFAFKRIESLLFMISLQEEVSGIKESLSTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFR 580          
BLAST of mRNA_P-wetherbeei_contig9960.1.1 vs. uniprot
Match: J3LW79_ORYBR (Formin-like protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LW79_ORYBR)

HSP 1 Score: 59.7 bits (143), Expect = 2.100e-7
Identity = 45/153 (29.41%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   25 LMSVAQADNIAIVLRALRRVGPEQLGLALA-DWNSFPADELQLLHRCLPTDAELKVAAA----------FSGAVEELSPAERFLCAVAFGGVVAPERRLAALLLAEQFDGQLARIKAGLVTVMAAASQARGSARLRVILGRVLAIGNRLNAGT 450
            L+ + +A+N  I+L  ++   P+ +  ALA D +   AD+L+ L +  PT  E+++  +          +SG  E L   E+F   +     V  + R+ A  +  QF  Q+  ++  L+ V +A  + RGS +L+VI+ ++L +GN+LN GT
Sbjct: 1029 LIDIRRANNTEIMLTKIKMPLPDMMSAALALDDSVLDADQLENLIKFCPTKEEMELLKSNYVTRFFYQNYSGDKETLGKCEQFFLELMKVPRVESKFRIFAFKI--QFQSQIRDVRKNLLAVSSACEELRGSEKLKVIMEKILFLGNKLNQGT 1179          
BLAST of mRNA_P-wetherbeei_contig9960.1.1 vs. uniprot
Match: A0A6D2HMQ9_9BRAS (Formin-like protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HMQ9_9BRAS)

HSP 1 Score: 58.9 bits (141), Expect = 3.700e-7
Identity = 45/144 (31.25%), Postives = 73/144 (50.69%), Query Frame = 1
Query:   25 LMSVAQADNIAIVLRALRRVGPEQLGLALADWNSFPADELQLLHRCLPTDAELKVAAAFSGAVEELSPAERFLCAVAFGGVVAPERRLAALLLAEQFDGQLARIKAGLVTVMAAASQARGSARLRVILGRVLAIGNRLNAGTHK 456
            ++   +A N++I+LRAL  V  E++  A+ + N  P + LQ L +  PT  E      +SG +  L PAERFL  +    +    +R+ +LL       +++ +K  L T+  A  + R S     +L  VL  GNR+N GT +
Sbjct:  484 IIDTRKAQNLSILLRALN-VTTEEVVDAIKEGNELPVELLQTLLKMAPTQEEELKLRLYSGDLNLLGPAERFLKILV--DIPFAFKRIESLLFMISLQEEVSGLKEALSTLEVACKKLRNSRLFLKLLEAVLKTGNRMNVGTFR 624          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9960.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D8LKU4_ECTSI7.130e-1136.24Formin-like 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A6G1CJE2_9ORYZ1.380e-1032.17Formin-like protein n=1 Tax=Oryza meyeriana var. g... [more]
B8AR82_ORYSI7.820e-1031.47Formin-like protein n=1 Tax=Oryza sativa subsp. in... [more]
FH12_ORYSJ8.400e-1031.47Formin-like protein 12 n=4 Tax=Oryza TaxID=4527 Re... [more]
A0A0E0GY40_ORYNI8.430e-1031.47Formin-like protein n=5 Tax=Oryza TaxID=4527 RepID... [more]
A0A8J5WKQ0_ZIZPA8.260e-930.77FH2 domain-containing protein n=1 Tax=Zizania palu... [more]
M4F7M6_BRARP1.460e-733.81Formin-like protein n=9 Tax=Brassica TaxID=3705 Re... [more]
A0A6J0NB15_RAPSA1.990e-733.81Formin-like protein n=1 Tax=Raphanus sativus TaxID... [more]
J3LW79_ORYBR2.100e-729.41Formin-like protein n=1 Tax=Oryza brachyantha TaxI... [more]
A0A6D2HMQ9_9BRAS3.700e-731.25Formin-like protein n=1 Tax=Microthlaspi erraticum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9960contigP-wetherbeei_contig9960:133..699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog554065.XP_005844931.1
PFAMsFH2,PTEN_C2
Model size477
Max annot lvl33090|Viridiplantae
KEGG koko:K02184
KEGG Pathwayko04320,map04320
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.17e-13
EggNOG OGsKOG1922@1|root,KOG1922@2759|Eukaryota,37M0R@33090|Viridiplantae
DescriptionBelongs to the formin-like family
Cds size450
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.9610586-CDS-P-wetherbeei_contig9960:132..4781683187118.9610586-CDS-P-wetherbeei_contig9960:132..478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9960 133..478 -
1683187118.9710658-CDS-P-wetherbeei_contig9960:568..6721683187118.9710658-CDS-P-wetherbeei_contig9960:568..672Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9960 569..672 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187118.9791567-UTR-P-wetherbeei_contig9960:672..6991683187118.9791567-UTR-P-wetherbeei_contig9960:672..699Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9960 673..699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9960.1.1prot_P-wetherbeei_contig9960.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9960 133..672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9960.1.1

>prot_P-wetherbeei_contig9960.1.1 ID=prot_P-wetherbeei_contig9960.1.1|Name=mRNA_P-wetherbeei_contig9960.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
MSVAQADNIAIVLRALRRVGPEQLGLALADWNSFPADELQLLHRCLPTDA
ELKVAAAFSGAVEELSPAERFLCAVAFGGVVAPERRLAALLLAEQFDGQL
ARIKAGLVTVMAAASQARGSARLRVILGRVLAIGNRLNAGTHKVRNKMG*
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mRNA from alignment at P-wetherbeei_contig9960:133..699-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9960.1.1 ID=mRNA_P-wetherbeei_contig9960.1.1|Name=mRNA_P-wetherbeei_contig9960.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig9960:133..699- (Phaeothamnion wetherbeei SAG_119_79)
AGGAAGCGGCCGGCTGCCCCGGTGCTGATGTCCGTGGCGCAGGCCGACAA CATCGCCATCGTCCTCCGCGCGCTGCGGCGGGTGGGGCCGGAGCAGCTGG GCCTGGCGCTTGCCGACTGGAACTCCTTTCCGTCCGCCGCTGCTGCCGCT GTCACTGATGCAGGCGCCGCCTCTGGCGTCGAAGCCGCCGACACCGCCGC TGGTGCAACCGACCGGCTGAGCGCCGACGAGCTGCAGCTGCTTCATAGAT GCCTGCCCACAGACGCCGAACTGAAGGTCGCCGCCGCGTTTTCCGGAGCG GTTGAGGAGCTCAGCCCCGCGGAGCGCTTTCTATGCGCCGTGGCGTTCGG CGGCGTGGTGGCGCCGGAGCGGCGGCTGGCGGCACTGCTGCTGGCGGAAC AATTCGACGGGCAGCTGGCGCGCATCAAGGCCGGGCTCGTGACTGTCATG GCGGCGGCGTCGCAGGCGCGCGGCAGCGCCCGCCTGCGGGTGATTTTGGG GCGGGTGCTCGCCATCGGCAATCGGCTCAATGCGGGGACGCATAAGGTGA GAAACAAGATGGGATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9960:133..699-

>mRNA_P-wetherbeei_contig9960.1.1 ID=mRNA_P-wetherbeei_contig9960.1.1|Name=mRNA_P-wetherbeei_contig9960.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig9960:133..699- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGTGGCGCAGGCCGACAACATCGCCATCGTCCTCCGCGCGCTGCG
GCGGGTGGGGCCGGAGCAGCTGGGCCTGGCGCTTGCCGACTGGAACTCCT
TTCCCGCCGACGAGCTGCAGCTGCTTCATAGATGCCTGCCCACAGACGCC
GAACTGAAGGTCGCCGCCGCGTTTTCCGGAGCGGTTGAGGAGCTCAGCCC
CGCGGAGCGCTTTCTATGCGCCGTGGCGTTCGGCGGCGTGGTGGCGCCGG
AGCGGCGGCTGGCGGCACTGCTGCTGGCGGAACAATTCGACGGGCAGCTG
GCGCGCATCAAGGCCGGGCTCGTGACTGTCATGGCGGCGGCGTCGCAGGC
GCGCGGCAGCGCCCGCCTGCGGGTGATTTTGGGGCGGGTGCTCGCCATCG
GCAATCGGCTCAATGCGGGGACGCATAAGGTGAGAAACAAGATGGGATAG
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