mRNA_P-wetherbeei_contig9913.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9913.1.1
Unique NamemRNA_P-wetherbeei_contig9913.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9913.1.1 vs. uniprot
Match: A0A2D2AH38_9PHAE (Prolycopene isomerase-like1 n=1 Tax=Sargassum integerrimum TaxID=1159339 RepID=A0A2D2AH38_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 5.810e-46
Identity = 81/124 (65.32%), Postives = 100/124 (80.65%), Query Frame = 1
Query:    1 ESEAMKRRRAEPLWEALEKIIPDIRARTELELIGSPLTHERFVRRHRGSYGPGYKAGQEAFPGPKTPLKGLLHCGDSTLPGIGVPAVAASGMNAANTAVSVWQHLLFLREMEGKGLVKTAFDGF 372
            E E +K+ RAE +W+ALEKIIPD+R RTE+EL+ +PLTHE F RR RGSYGPG++AGQ  FPG  TPLKGLLHCGDSTLPGIG+PAVAASGMNAA+T   VW+ L  L +M+ +G+V + F+ F
Sbjct:  380 EYEKLKKERAECMWKALEKIIPDVRRRTEVELVATPLTHEFFNRRFRGSYGPGWRAGQAEFPGCITPLKGLLHCGDSTLPGIGLPAVAASGMNAASTLTPVWKQLGLLWDMKRRGMVDSKFNDF 503          
BLAST of mRNA_P-wetherbeei_contig9913.1.1 vs. uniprot
Match: A0A835Z9G8_9STRA (Amine oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G8_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.360e-45
Identity = 80/121 (66.12%), Postives = 95/121 (78.51%), Query Frame = 1
Query:    1 ESEAMKRRRAEPLWEALEKIIPDIRARTELELIGSPLTHERFVRRHRGSYGPGYKAGQEAFPGPKTPLKGLLHCGDSTLPGIGVPAVAASGMNAANTAVSVWQHLLFLREMEGKGLVKTAF 363
            E E +K +R + LW ALE+IIPDIRAR E+ L  SPLTHE F RRHRGSYGPG++AG+  FPG  TP+K LL CGDSTLPG+GVPAVAASGM+AANT V VWQHL F++EM+ KG +   F
Sbjct:  412 EYEELKEQRTQVLWNALERIIPDIRARAEVTLPASPLTHEMFNRRHRGSYGPGWRAGEGTFPGCTTPIKDLLRCGDSTLPGLGVPAVAASGMHAANTLVPVWQHLKFVKEMQSKGFIVDRF 532          
BLAST of mRNA_P-wetherbeei_contig9913.1.1 vs. uniprot
Match: A0A2D2AH28_9PHAE (Prolycopene isomerase-like1 n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A2D2AH28_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 4.590e-44
Identity = 75/124 (60.48%), Postives = 101/124 (81.45%), Query Frame = 1
Query:    1 ESEAMKRRRAEPLWEALEKIIPDIRARTELELIGSPLTHERFVRRHRGSYGPGYKAGQEAFPGPKTPLKGLLHCGDSTLPGIGVPAVAASGMNAANTAVSVWQHLLFLREMEGKGLVKTAFDGF 372
            E EA+K+ RAE +W+ALE+IIPD+R RTE+EL+ +PLTHE F RR +GSYGPG++AG+  FPG  TPLK LLHCGDSTLPG+G+PAVAASGM+AA+T   VW+ L  L +M+ +G++++ F+ F
Sbjct:  380 EYEALKKERAEGMWKALERIIPDVRKRTEVELVATPLTHEFFNRRFKGSYGPGWRAGEAEFPGCVTPLKSLLHCGDSTLPGLGLPAVAASGMSAASTITPVWKQLGLLWDMQRRGMIESKFNDF 503          
BLAST of mRNA_P-wetherbeei_contig9913.1.1 vs. uniprot
Match: A0A6P0TLA6_9CYAN (Carotene isomerase (Fragment) n=1 Tax=Cyanothece sp. SIO2G6 TaxID=2607797 RepID=A0A6P0TLA6_9CYAN)

HSP 1 Score: 140 bits (354), Expect = 1.000e-40
Identity = 64/111 (57.66%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    7 EAMKRRRAEPLWEALEKIIPDIRARTELELIGSPLTHERFVRRHRGSYGPGYKAGQEAFPGPKTPLKGLLHCGDSTLPGIGVPAVAASGMNAANTAVSVWQHLLFLREMEG 339
            E++K++RAE +W+ALE+IIPD+R+R  + L+G+PLTHERF+RRH+G+YGP ++AG++ FPGP TPL G   CGDST PGIG+PAVA SGM  ANT   + +HL  +R + G
Sbjct:   21 ESLKKQRAEVMWQALERIIPDVRSRCWVNLVGTPLTHERFLRRHQGTYGPAFRAGKQLFPGPNTPLPGFWCCGDSTFPGIGLPAVATSGMIVANTIAPINKHLDLIRSLSG 131          
BLAST of mRNA_P-wetherbeei_contig9913.1.1 vs. uniprot
Match: D8U6T4_VOLCA (FAD_binding_2 domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U6T4_VOLCA)

HSP 1 Score: 150 bits (380), Expect = 1.240e-40
Identity = 74/109 (67.89%), Postives = 88/109 (80.73%), Query Frame = 1
Query:   10 AMKRRRAEPLWEALEKIIPDIRARTELELIGSPLTHERFVRRHRGSYGPGYKA-GQEAFPGPKTPLKGLLHCGDSTLPGIGVPAVAASGMNAANTAVSVWQHLLFLREM 333
            A+K  RA+PLWEALE+ IPDIR+RTEL L+GSPLTHERF+RRHRGSYGPG  A G +++PGPKTP+ GL  CGDS +PGIGVPA AASGM AAN+   VW HL  + E+
Sbjct:  428 ALKEERAQPLWEALERFIPDIRSRTELTLVGSPLTHERFLRRHRGSYGPGISASGGQSWPGPKTPIPGLSVCGDSCMPGIGVPAAAASGMIAANSLAPVWSHLNMMDEL 536          
BLAST of mRNA_P-wetherbeei_contig9913.1.1 vs. uniprot
Match: A0A8J4LSU1_9CHLO (Amino_oxidase domain-containing protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4LSU1_9CHLO)

HSP 1 Score: 151 bits (382), Expect = 1.360e-40
Identity = 74/106 (69.81%), Postives = 86/106 (81.13%), Query Frame = 1
Query:   10 AMKRRRAEPLWEALEKIIPDIRARTELELIGSPLTHERFVRRHRGSYGPGYKA-GQEAFPGPKTPLKGLLHCGDSTLPGIGVPAVAASGMNAANTAVSVWQHLLFL 324
            A+K  RA+PLWEALE++IPDIR R EL L+GSPLTHERFVRRHRGSYGPG  A G+E++PGPKTP+ GL  CGDS +PGIGVPA AASGM AAN+   VW HL  +
Sbjct:  491 ALKEERAQPLWEALERVIPDIRRRAELTLVGSPLTHERFVRRHRGSYGPGISASGKESWPGPKTPIPGLSVCGDSCMPGIGVPAAAASGMIAANSLAPVWSHLAMM 596          
BLAST of mRNA_P-wetherbeei_contig9913.1.1 vs. uniprot
Match: A0A832M237_9CYAN (Carotene isomerase n=1 Tax=Oscillatoriales cyanobacterium SpSt-402 TaxID=2282168 RepID=A0A832M237_9CYAN)

HSP 1 Score: 146 bits (369), Expect = 2.190e-40
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 1
Query:   13 MKRRRAEPLWEALEKIIPDIRARTELELIGSPLTHERFVRRHRGSYGPGYKAGQEAFPGPKTPLKGLLHCGDSTLPGIGVPAVAASGMNAANTAVSVWQHLLFLREM 333
            +K+ RA  +W+ALE++IPD+R+R E+ L+G+PLTHERF+RRHRGSYGP  +AG+  FPG KTPL GLL CGDST PGIG+PAVAASGM AANT   V QHL  L+++
Sbjct:  246 LKQERAAVMWQALERVIPDVRSRCEITLVGTPLTHERFLRRHRGSYGPALRAGESLFPGAKTPLPGLLLCGDSTFPGIGLPAVAASGMIAANTLAPVSQHLAMLKDL 352          
BLAST of mRNA_P-wetherbeei_contig9913.1.1 vs. uniprot
Match: A0A150GIP4_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GIP4_GONPE)

HSP 1 Score: 148 bits (374), Expect = 6.080e-40
Identity = 74/112 (66.07%), Postives = 86/112 (76.79%), Query Frame = 1
Query:    1 ESEAMKRRRAEPLWEALEKIIPDIRARTELELIGSPLTHERFVRRHRGSYGPGYKA-GQEAFPGPKTPLKGLLHCGDSTLPGIGVPAVAASGMNAANTAVSVWQHLLFLREM 333
            E  A K  RA+PLW ALE+ IPDIR RTEL+L+GSPLTHERFVRRHRGSYGPG  A G + +PGP+TP+ GL  CGDS +PGIGVPA AASGM AAN+   VW HL  + E+
Sbjct:  388 EYRAFKEERAQPLWRALERFIPDIRERTELKLVGSPLTHERFVRRHRGSYGPGISAAGGQGWPGPRTPVPGLSVCGDSCMPGIGVPAAAASGMIAANSLAPVWSHLAMMGEL 499          
BLAST of mRNA_P-wetherbeei_contig9913.1.1 vs. uniprot
Match: L8LSJ1_9CHRO (Phytoene dehydrogenase-like oxidoreductase n=1 Tax=Gloeocapsa sp. PCC 73106 TaxID=102232 RepID=L8LSJ1_9CHRO)

HSP 1 Score: 148 bits (373), Expect = 8.260e-40
Identity = 72/107 (67.29%), Postives = 89/107 (83.18%), Query Frame = 1
Query:   13 MKRRRAEPLWEALEKIIPDIRARTELELIGSPLTHERFVRRHRGSYGPGYKAGQEAFPGPKTPLKGLLHCGDSTLPGIGVPAVAASGMNAANTAVSVWQHLLFLREM 333
            +K+ R+E +W+ALEKIIPDIRAR E+ LIG+PLTH RF+RR+RGSYGP  KAG+E+FPGP TP+ GLL CGDST PGIG+PAVAASGM AAN+   V +HL  LR++
Sbjct:  402 LKQERSEVMWQALEKIIPDIRARCEVTLIGTPLTHARFLRRYRGSYGPSLKAGKESFPGPYTPVSGLLCCGDSTFPGIGIPAVAASGMIAANSLAPVTKHLALLRDI 508          
BLAST of mRNA_P-wetherbeei_contig9913.1.1 vs. uniprot
Match: A0A2K3DFE7_CHLRE (Uncharacterized protein n=4 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DFE7_CHLRE)

HSP 1 Score: 149 bits (375), Expect = 1.650e-39
Identity = 75/106 (70.75%), Postives = 85/106 (80.19%), Query Frame = 1
Query:    1 ESEAMKRRRAEPLWEALEKIIPDIRARTELELIGSPLTHERFVRRHRGSYGPGYKA-GQEAFPGPKTPLKGLLHCGDSTLPGIGVPAVAASGMNAANTAVSVWQHL 315
            E +A+K  RAEPLWEALE+ IPDIR RTEL+L+GSPLTH+RFVRRHRGSYGPG  A G   +PGPKTP+ GL  CGDS +PGIGVPA AASGM AAN+   VW HL
Sbjct:  513 EYKALKEERAEPLWEALERFIPDIRDRTELKLVGSPLTHQRFVRRHRGSYGPGISAAGGAGWPGPKTPVPGLTVCGDSCMPGIGVPAAAASGMIAANSLAPVWAHL 618          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9913.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D2AH38_9PHAE5.810e-4665.32Prolycopene isomerase-like1 n=1 Tax=Sargassum inte... [more]
A0A835Z9G8_9STRA1.360e-4566.12Amine oxidase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A2D2AH28_9PHAE4.590e-4460.48Prolycopene isomerase-like1 n=2 Tax=Scytosiphonace... [more]
A0A6P0TLA6_9CYAN1.000e-4057.66Carotene isomerase (Fragment) n=1 Tax=Cyanothece s... [more]
D8U6T4_VOLCA1.240e-4067.89FAD_binding_2 domain-containing protein n=1 Tax=Vo... [more]
A0A8J4LSU1_9CHLO1.360e-4069.81Amino_oxidase domain-containing protein n=2 Tax=Vo... [more]
A0A832M237_9CYAN2.190e-4064.49Carotene isomerase n=1 Tax=Oscillatoriales cyanoba... [more]
A0A150GIP4_GONPE6.080e-4066.07Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
L8LSJ1_9CHRO8.260e-4067.29Phytoene dehydrogenase-like oxidoreductase n=1 Tax... [more]
A0A2K3DFE7_CHLRE1.650e-3970.75Uncharacterized protein n=4 Tax=Chlamydomonas TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9913contigP-wetherbeei_contig9913:2..376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3067.XP_002954344.1
PFAMsAmino_oxidase,NAD_binding_8
Model size375
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.41e-41
EggNOG OGsCOG1233@1|root,KOG4254@2759|Eukaryota,37N1G@33090|Viridiplantae,34H66@3041|Chlorophyta
Ec32 ortholog descriptioncarotenoid isomerase-like protein
Ec32 orthologEc-03_001460.2
DescriptionFlavin containing amine oxidoreductase
Cds size363
COG categoryH
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187116.607747-UTR-P-wetherbeei_contig9913:1..131683187116.607747-UTR-P-wetherbeei_contig9913:1..13Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig9913 2..13 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187116.618301-CDS-P-wetherbeei_contig9913:13..3761683187116.618301-CDS-P-wetherbeei_contig9913:13..376Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9913 14..376 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9913.1.1prot_P-wetherbeei_contig9913.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9913 14..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9913.1.1

>prot_P-wetherbeei_contig9913.1.1 ID=prot_P-wetherbeei_contig9913.1.1|Name=mRNA_P-wetherbeei_contig9913.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MKRRRAEPLWEALEKIIPDIRARTELELIGSPLTHERFVRRHRGSYGPGY
KAGQEAFPGPKTPLKGLLHCGDSTLPGIGVPAVAASGMNAANTAVSVWQH
LLFLREMEGKGLVKTAFDGF*
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mRNA from alignment at P-wetherbeei_contig9913:2..376+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9913.1.1 ID=mRNA_P-wetherbeei_contig9913.1.1|Name=mRNA_P-wetherbeei_contig9913.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig9913:2..376+ (Phaeothamnion wetherbeei SAG_119_79)
GAGTCCGAAGCAATGAAGCGCCGCCGTGCCGAGCCGCTGTGGGAGGCCCT CGAGAAGATCATCCCGGACATTAGAGCCCGGACGGAGCTGGAGCTCATCG GGAGCCCGCTGACGCACGAGCGGTTCGTGCGGCGCCACCGAGGATCGTAC GGCCCCGGCTACAAGGCCGGCCAGGAGGCATTTCCGGGGCCGAAGACGCC ACTGAAGGGGCTGCTGCACTGCGGGGATTCGACGCTGCCCGGCATTGGCG TCCCGGCGGTGGCGGCCTCGGGGATGAACGCGGCAAACACCGCCGTGTCC GTCTGGCAGCACTTGCTATTTCTGCGTGAAATGGAGGGAAAAGGGCTGGT CAAGACAGCATTTGACGGGTTCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9913:2..376+

>mRNA_P-wetherbeei_contig9913.1.1 ID=mRNA_P-wetherbeei_contig9913.1.1|Name=mRNA_P-wetherbeei_contig9913.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig9913:2..376+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCGCCGCCGTGCCGAGCCGCTGTGGGAGGCCCTCGAGAAGATCAT
CCCGGACATTAGAGCCCGGACGGAGCTGGAGCTCATCGGGAGCCCGCTGA
CGCACGAGCGGTTCGTGCGGCGCCACCGAGGATCGTACGGCCCCGGCTAC
AAGGCCGGCCAGGAGGCATTTCCGGGGCCGAAGACGCCACTGAAGGGGCT
GCTGCACTGCGGGGATTCGACGCTGCCCGGCATTGGCGTCCCGGCGGTGG
CGGCCTCGGGGATGAACGCGGCAAACACCGCCGTGTCCGTCTGGCAGCAC
TTGCTATTTCTGCGTGAAATGGAGGGAAAAGGGCTGGTCAAGACAGCATT
TGACGGGTTCTAA
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