mRNA_P-wetherbeei_contig9906.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9906.2.1
Unique NamemRNA_P-wetherbeei_contig9906.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A353LN58_9PROT (Translation initiation factor IF-3 n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LN58_9PROT)

HSP 1 Score: 224 bits (571), Expect = 1.470e-72
Identity = 112/142 (78.87%), Postives = 126/142 (88.73%), Query Frame = 1
Query:   43 RRPMSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468
            RRP +A PSR+GPRVN+ IDVP VRLID EG+QVGVV+   A+ AA  AGLDLVEVSPNVDPPVCK+LDYGRFKYQAQKKANEARKKQK V+IKEIKMRP ID+HDY VKM+A+ RFFE GDKVKVTIRFRGRE++HQ+LGM
Sbjct:    3 RRPAAAPPSRKGPRVNDFIDVPEVRLIDAEGKQVGVVSIDEALSAAKAAGLDLVEVSPNVDPPVCKILDYGRFKYQAQKKANEARKKQKTVDIKEIKMRPNIDVHDYDVKMRAMNRFFEAGDKVKVTIRFRGREMAHQDLGM 144          
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: IF3_PARL1 (Translation initiation factor IF-3 n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=IF3_PARL1)

HSP 1 Score: 211 bits (537), Expect = 1.870e-67
Identity = 105/139 (75.54%), Postives = 119/139 (85.61%), Query Frame = 1
Query:   52 MSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468
            M A P+REGPR+N+ ID P V LID EGE+ GV+ T  AI+ A +AGLDLVEVSPN  PPVCKLLDYG+FKYQAQKKANEARKKQK VE+KEIKMRP ID HDY VKM+A+ RFFEEGDKVKVT+RFRGRE++HQELGM
Sbjct:    1 MQAPPTREGPRINDMIDEPTVLLIDAEGEKRGVIPTDEAIRMAEEAGLDLVEVSPNAKPPVCKLLDYGKFKYQAQKKANEARKKQKTVEVKEIKMRPNIDTHDYEVKMRAMLRFFEEGDKVKVTLRFRGREMAHQELGM 139          
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A3N1LGU4_9PROT (Translation initiation factor IF-3 n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1LGU4_9PROT)

HSP 1 Score: 210 bits (535), Expect = 7.950e-67
Identity = 102/156 (65.38%), Postives = 127/156 (81.41%), Query Frame = 1
Query:    1 SGRNLENNREVYTIRRPMSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468
            +G +  ++R  +  R P   TPSR+GPRVN EI VP VRL+D  GE VGVVTT  AI  A +AGLDLVEV+PN DPPVCK+LD+G+FKY+ QKK NEARKKQKI+E+KEIK+RP ID HDY VKM+++Q+F EEGDKVKVT+RFRGRE++HQ+LG+
Sbjct:    7 AGLHCHDHRRRFIARPPFEPTPSRDGPRVNNEIRVPRVRLVDERGEMVGVVTTPEAITMAEEAGLDLVEVAPNADPPVCKILDFGKFKYEEQKKKNEARKKQKIIEVKEIKLRPGIDDHDYDVKMRSMQKFIEEGDKVKVTLRFRGREMAHQDLGL 162          
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A0N1LM39_9PROT (Translation initiation factor IF-3 n=9 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0N1LM39_9PROT)

HSP 1 Score: 209 bits (531), Expect = 1.860e-66
Identity = 99/135 (73.33%), Postives = 121/135 (89.63%), Query Frame = 1
Query:   64 PSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468
            P R+GPR+N EI+V +VRL+D EGE VGVV+ R A+ AA DAGLDLVEVSPN DPPVCK+LDYG++KY+AQKKANEARKKQKI+E+KEIK+RP ID HDY +KMKA++RF EEGDKVKVT+RFRGRE++HQ++GM
Sbjct:   11 PQRDGPRINREINVRSVRLVDAEGEMVGVVSLRDALIAAEDAGLDLVEVSPNADPPVCKILDYGKYKYEAQKKANEARKKQKIIEVKEIKLRPNIDEHDYEIKMKAMRRFLEEGDKVKVTMRFRGREMAHQDIGM 145          
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A3D5URD5_9HYPH (Translation initiation factor IF-3 n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A3D5URD5_9HYPH)

HSP 1 Score: 208 bits (529), Expect = 3.280e-66
Identity = 102/138 (73.91%), Postives = 119/138 (86.23%), Query Frame = 1
Query:   52 MSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELG 465
            M A P++EGPRVN+ ID P V LID EGE+ GV+ T  AI+ A +AGLDLVEVSPN  PPVCKLLDYG+FKYQAQKKANEARKKQK VE+KEIKMRP ID+HDY VKM+++ RFFEEGDKVKVT+RFRGRE++HQ+LG
Sbjct:    1 MQAPPTKEGPRVNDMIDEPTVLLIDAEGEKRGVIPTDEAIRMAEEAGLDLVEVSPNAKPPVCKLLDYGKFKYQAQKKANEARKKQKTVEVKEIKMRPNIDVHDYDVKMRSMLRFFEEGDKVKVTLRFRGREMAHQDLG 138          
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A545U187_9PROT (Translation initiation factor IF-3 n=2 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545U187_9PROT)

HSP 1 Score: 208 bits (529), Expect = 3.620e-66
Identity = 100/142 (70.42%), Postives = 119/142 (83.80%), Query Frame = 1
Query:   43 RRPMSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468
            R P+  TPSR+GPRVNE+I VP VRL+D  GEQVGVV+   A+Q A  AGLDLVE+SPN DPPVCK+LDYGRF+Y+AQKK NEARKKQK++++KEIKMRP ID HDY VKM+A  RF  EGDKVKVT+RFRGRE+ HQ+LG+
Sbjct:    3 RPPVDLTPSRDGPRVNEQIGVPTVRLVDENGEQVGVVSKSDALQRAFAAGLDLVEISPNADPPVCKILDYGRFRYEAQKKKNEARKKQKVIDVKEIKMRPNIDSHDYDVKMRAANRFIGEGDKVKVTMRFRGREMVHQDLGL 144          
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A095UCU7_9HYPH (Translation initiation factor IF-3 n=7 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A095UCU7_9HYPH)

HSP 1 Score: 208 bits (529), Expect = 5.350e-66
Identity = 105/153 (68.63%), Postives = 123/153 (80.39%), Query Frame = 1
Query:   13 LENNREVYTIRRPMSA-TPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468
              NN+E  TIRRP  A  P +EGPR N EI +P V+LID EG+ +GVV T  A++ A +AGLDLVE+SPN DPPVCK+LD G+ KY  QKKA EARKKQKIVE+KEIKMRP ID HDY VKMKA+ RFFEEGDKVKVT++FRGRE++HQELGM
Sbjct:    4 FRNNQENTTIRRPFKADAPVKEGPRANREIRIPKVQLIDAEGQNLGVVPTDQALRMAEEAGLDLVEISPNNDPPVCKILDLGKLKYANQKKAAEARKKQKIVEVKEIKMRPNIDTHDYEVKMKAINRFFEEGDKVKVTLKFRGREMAHQELGM 156          
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A2M7GRF9_9PROT (Translation initiation factor IF-3 n=9 Tax=Rhodospirillales TaxID=204441 RepID=A0A2M7GRF9_9PROT)

HSP 1 Score: 207 bits (527), Expect = 6.400e-66
Identity = 96/135 (71.11%), Postives = 120/135 (88.89%), Query Frame = 1
Query:   64 PSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468
            PS++GPR+NE+IDV  VR++D +GE VGV++T+ AI+ A + GLDLVEVSPN DPPVCK+LDYG+FKY+AQKKANEARKKQK++E+KEIKMRP ID HDY  KMKAV++F E GDKVK+TIRFRGRE++HQ+LGM
Sbjct:    6 PSKDGPRINEDIDVAQVRVVDADGEMVGVLSTKEAIEMAFEVGLDLVEVSPNADPPVCKILDYGKFKYEAQKKANEARKKQKVIEVKEIKMRPGIDEHDYQTKMKAVRKFLENGDKVKMTIRFRGREMAHQDLGM 140          
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A2D6JW27_9PROT (Translation initiation factor IF-3 n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D6JW27_9PROT)

HSP 1 Score: 207 bits (527), Expect = 7.290e-66
Identity = 95/143 (66.43%), Postives = 123/143 (86.01%), Query Frame = 1
Query:   40 IRRPMSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468
            +RRP +  P+REGPRVNE I+   +R+++ +GE VGV++    I+ A +AGLDLVEVSPN DPPVCK+LDYG++KY+AQKKANEARKKQK++++KEIKMRP ID HDY VKM++V+RF +EGDKVK+TIRFRGRE++HQELGM
Sbjct:    2 VRRPFNQAPTREGPRVNEHIEAEKIRVVNADGEMVGVISKEEGIEIAFEAGLDLVEVSPNADPPVCKVLDYGKYKYEAQKKANEARKKQKVIDVKEIKMRPGIDEHDYQVKMRSVRRFLDEGDKVKMTIRFRGREMAHQELGM 144          
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A6N6VMI6_9HYPH (Translation initiation factor IF-3 n=2 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VMI6_9HYPH)

HSP 1 Score: 207 bits (526), Expect = 1.040e-65
Identity = 103/142 (72.54%), Postives = 121/142 (85.21%), Query Frame = 1
Query:   43 RRPMSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468
            RRP+ A P+REGPR+NE ID   V LID EGE+ GV+ T  A++ A +AGLDLVEVSPN  PPVCKLLD+G+FK+QAQKKANEARKKQK VE+KEIKMRP ID HDY VKMK++ RFF+EGDKVKVT+RFRGRE++HQELGM
Sbjct:    3 RRPVQAPPTREGPRINEMIDESTVLLIDAEGEKRGVIPTVEAMRMAEEAGLDLVEVSPNSKPPVCKLLDFGKFKFQAQKKANEARKKQKTVEVKEIKMRPNIDTHDYDVKMKSMLRFFDEGDKVKVTLRFRGREMAHQELGM 144          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A353LN58_9PROT1.470e-7278.87Translation initiation factor IF-3 n=2 Tax=Alphapr... [more]
IF3_PARL11.870e-6775.54Translation initiation factor IF-3 n=6 Tax=Alphapr... [more]
A0A3N1LGU4_9PROT7.950e-6765.38Translation initiation factor IF-3 n=1 Tax=Stella ... [more]
A0A0N1LM39_9PROT1.860e-6673.33Translation initiation factor IF-3 n=9 Tax=Alphapr... [more]
A0A3D5URD5_9HYPH3.280e-6673.91Translation initiation factor IF-3 n=1 Tax=Rhodobi... [more]
A0A545U187_9PROT3.620e-6670.42Translation initiation factor IF-3 n=2 Tax=Denitro... [more]
A0A095UCU7_9HYPH5.350e-6668.63Translation initiation factor IF-3 n=7 Tax=Rhizobi... [more]
A0A2M7GRF9_9PROT6.400e-6671.11Translation initiation factor IF-3 n=9 Tax=Rhodosp... [more]
A0A2D6JW27_9PROT7.290e-6666.43Translation initiation factor IF-3 n=2 Tax=Alphapr... [more]
A0A6N6VMI6_9HYPH1.040e-6572.54Translation initiation factor IF-3 n=2 Tax=Parviba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9906contigP-wetherbeei_contig9906:1979..2446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog402881.Plav_0207
Preferred nameinfC
PFAMsIF3_C,IF3_N
Model size468
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02520
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
Exons1
Evalue3.06e-68
EggNOG OGsCOG0290@1|root,COG0290@2|Bacteria,1RDD2@1224|Proteobacteria,2U58Z@28211|Alphaproteobacteria,1JP7Q@119043|Rhodobiaceae
DescriptionIF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
Cds size468
COG categoryJ
BRITEko00000,ko03012,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187116.0949574-CDS-P-wetherbeei_contig9906:1978..24461683187116.0949574-CDS-P-wetherbeei_contig9906:1978..2446Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9906 1979..2446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9906.2.1prot_P-wetherbeei_contig9906.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9906 1979..2446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9906.2.1

>prot_P-wetherbeei_contig9906.2.1 ID=prot_P-wetherbeei_contig9906.2.1|Name=mRNA_P-wetherbeei_contig9906.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
SGRNLENNREVYTIRRPMSATPSREGPRVNEEIDVPNVRLIDGEGEQVGV
VTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARK
KQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELS
HQELGM
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mRNA from alignment at P-wetherbeei_contig9906:1979..2446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9906.2.1 ID=mRNA_P-wetherbeei_contig9906.2.1|Name=mRNA_P-wetherbeei_contig9906.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig9906:1979..2446+ (Phaeothamnion wetherbeei SAG_119_79)
TCTGGCCGCAACTTAGAAAACAATCGAGAGGTTTACACCATACGTCGACC AATGTCCGCGACGCCGTCCCGCGAGGGCCCGCGCGTAAATGAAGAAATAG ATGTGCCGAATGTCCGGCTGATTGATGGCGAAGGCGAGCAGGTGGGGGTT GTCACCACCCGTGCGGCCATCCAGGCGGCAATGGATGCGGGCCTGGATCT GGTAGAGGTGTCGCCCAACGTCGATCCCCCGGTGTGCAAGCTTCTGGATT ATGGCCGCTTCAAATATCAGGCCCAGAAAAAGGCCAATGAAGCGCGCAAA AAACAGAAGATCGTCGAAATAAAAGAAATCAAGATGCGGCCCACCATCGA CATCCATGATTATGGCGTGAAGATGAAGGCGGTGCAGCGCTTTTTCGAAG AAGGCGACAAGGTCAAGGTCACCATCCGTTTCCGGGGCCGGGAATTATCC CACCAGGAACTGGGCATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9906:1979..2446+

>mRNA_P-wetherbeei_contig9906.2.1 ID=mRNA_P-wetherbeei_contig9906.2.1|Name=mRNA_P-wetherbeei_contig9906.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig9906:1979..2446+ (Phaeothamnion wetherbeei SAG_119_79)
TCTGGCCGCAACTTAGAAAACAATCGAGAGGTTTACACCATACGTCGACC
AATGTCCGCGACGCCGTCCCGCGAGGGCCCGCGCGTAAATGAAGAAATAG
ATGTGCCGAATGTCCGGCTGATTGATGGCGAAGGCGAGCAGGTGGGGGTT
GTCACCACCCGTGCGGCCATCCAGGCGGCAATGGATGCGGGCCTGGATCT
GGTAGAGGTGTCGCCCAACGTCGATCCCCCGGTGTGCAAGCTTCTGGATT
ATGGCCGCTTCAAATATCAGGCCCAGAAAAAGGCCAATGAAGCGCGCAAA
AAACAGAAGATCGTCGAAATAAAAGAAATCAAGATGCGGCCCACCATCGA
CATCCATGATTATGGCGTGAAGATGAAGGCGGTGCAGCGCTTTTTCGAAG
AAGGCGACAAGGTCAAGGTCACCATCCGTTTCCGGGGCCGGGAATTATCC
CACCAGGAACTGGGCATG
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