mRNA_P-wetherbeei_contig9906.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A353LN58_9PROT (Translation initiation factor IF-3 n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LN58_9PROT) HSP 1 Score: 224 bits (571), Expect = 1.470e-72 Identity = 112/142 (78.87%), Postives = 126/142 (88.73%), Query Frame = 1 Query: 43 RRPMSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468 RRP +A PSR+GPRVN+ IDVP VRLID EG+QVGVV+ A+ AA AGLDLVEVSPNVDPPVCK+LDYGRFKYQAQKKANEARKKQK V+IKEIKMRP ID+HDY VKM+A+ RFFE GDKVKVTIRFRGRE++HQ+LGM Sbjct: 3 RRPAAAPPSRKGPRVNDFIDVPEVRLIDAEGKQVGVVSIDEALSAAKAAGLDLVEVSPNVDPPVCKILDYGRFKYQAQKKANEARKKQKTVDIKEIKMRPNIDVHDYDVKMRAMNRFFEAGDKVKVTIRFRGREMAHQDLGM 144
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: IF3_PARL1 (Translation initiation factor IF-3 n=6 Tax=Alphaproteobacteria TaxID=28211 RepID=IF3_PARL1) HSP 1 Score: 211 bits (537), Expect = 1.870e-67 Identity = 105/139 (75.54%), Postives = 119/139 (85.61%), Query Frame = 1 Query: 52 MSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468 M A P+REGPR+N+ ID P V LID EGE+ GV+ T AI+ A +AGLDLVEVSPN PPVCKLLDYG+FKYQAQKKANEARKKQK VE+KEIKMRP ID HDY VKM+A+ RFFEEGDKVKVT+RFRGRE++HQELGM Sbjct: 1 MQAPPTREGPRINDMIDEPTVLLIDAEGEKRGVIPTDEAIRMAEEAGLDLVEVSPNAKPPVCKLLDYGKFKYQAQKKANEARKKQKTVEVKEIKMRPNIDTHDYEVKMRAMLRFFEEGDKVKVTLRFRGREMAHQELGM 139
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A3N1LGU4_9PROT (Translation initiation factor IF-3 n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1LGU4_9PROT) HSP 1 Score: 210 bits (535), Expect = 7.950e-67 Identity = 102/156 (65.38%), Postives = 127/156 (81.41%), Query Frame = 1 Query: 1 SGRNLENNREVYTIRRPMSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468 +G + ++R + R P TPSR+GPRVN EI VP VRL+D GE VGVVTT AI A +AGLDLVEV+PN DPPVCK+LD+G+FKY+ QKK NEARKKQKI+E+KEIK+RP ID HDY VKM+++Q+F EEGDKVKVT+RFRGRE++HQ+LG+ Sbjct: 7 AGLHCHDHRRRFIARPPFEPTPSRDGPRVNNEIRVPRVRLVDERGEMVGVVTTPEAITMAEEAGLDLVEVAPNADPPVCKILDFGKFKYEEQKKKNEARKKQKIIEVKEIKLRPGIDDHDYDVKMRSMQKFIEEGDKVKVTLRFRGREMAHQDLGL 162
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A0N1LM39_9PROT (Translation initiation factor IF-3 n=9 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A0N1LM39_9PROT) HSP 1 Score: 209 bits (531), Expect = 1.860e-66 Identity = 99/135 (73.33%), Postives = 121/135 (89.63%), Query Frame = 1 Query: 64 PSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468 P R+GPR+N EI+V +VRL+D EGE VGVV+ R A+ AA DAGLDLVEVSPN DPPVCK+LDYG++KY+AQKKANEARKKQKI+E+KEIK+RP ID HDY +KMKA++RF EEGDKVKVT+RFRGRE++HQ++GM Sbjct: 11 PQRDGPRINREINVRSVRLVDAEGEMVGVVSLRDALIAAEDAGLDLVEVSPNADPPVCKILDYGKYKYEAQKKANEARKKQKIIEVKEIKLRPNIDEHDYEIKMKAMRRFLEEGDKVKVTMRFRGREMAHQDIGM 145
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A3D5URD5_9HYPH (Translation initiation factor IF-3 n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A3D5URD5_9HYPH) HSP 1 Score: 208 bits (529), Expect = 3.280e-66 Identity = 102/138 (73.91%), Postives = 119/138 (86.23%), Query Frame = 1 Query: 52 MSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELG 465 M A P++EGPRVN+ ID P V LID EGE+ GV+ T AI+ A +AGLDLVEVSPN PPVCKLLDYG+FKYQAQKKANEARKKQK VE+KEIKMRP ID+HDY VKM+++ RFFEEGDKVKVT+RFRGRE++HQ+LG Sbjct: 1 MQAPPTKEGPRVNDMIDEPTVLLIDAEGEKRGVIPTDEAIRMAEEAGLDLVEVSPNAKPPVCKLLDYGKFKYQAQKKANEARKKQKTVEVKEIKMRPNIDVHDYDVKMRSMLRFFEEGDKVKVTLRFRGREMAHQDLG 138
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A545U187_9PROT (Translation initiation factor IF-3 n=2 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545U187_9PROT) HSP 1 Score: 208 bits (529), Expect = 3.620e-66 Identity = 100/142 (70.42%), Postives = 119/142 (83.80%), Query Frame = 1 Query: 43 RRPMSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468 R P+ TPSR+GPRVNE+I VP VRL+D GEQVGVV+ A+Q A AGLDLVE+SPN DPPVCK+LDYGRF+Y+AQKK NEARKKQK++++KEIKMRP ID HDY VKM+A RF EGDKVKVT+RFRGRE+ HQ+LG+ Sbjct: 3 RPPVDLTPSRDGPRVNEQIGVPTVRLVDENGEQVGVVSKSDALQRAFAAGLDLVEISPNADPPVCKILDYGRFRYEAQKKKNEARKKQKVIDVKEIKMRPNIDSHDYDVKMRAANRFIGEGDKVKVTMRFRGREMVHQDLGL 144
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A095UCU7_9HYPH (Translation initiation factor IF-3 n=7 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A095UCU7_9HYPH) HSP 1 Score: 208 bits (529), Expect = 5.350e-66 Identity = 105/153 (68.63%), Postives = 123/153 (80.39%), Query Frame = 1 Query: 13 LENNREVYTIRRPMSA-TPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468 NN+E TIRRP A P +EGPR N EI +P V+LID EG+ +GVV T A++ A +AGLDLVE+SPN DPPVCK+LD G+ KY QKKA EARKKQKIVE+KEIKMRP ID HDY VKMKA+ RFFEEGDKVKVT++FRGRE++HQELGM Sbjct: 4 FRNNQENTTIRRPFKADAPVKEGPRANREIRIPKVQLIDAEGQNLGVVPTDQALRMAEEAGLDLVEISPNNDPPVCKILDLGKLKYANQKKAAEARKKQKIVEVKEIKMRPNIDTHDYEVKMKAINRFFEEGDKVKVTLKFRGREMAHQELGM 156
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A2M7GRF9_9PROT (Translation initiation factor IF-3 n=9 Tax=Rhodospirillales TaxID=204441 RepID=A0A2M7GRF9_9PROT) HSP 1 Score: 207 bits (527), Expect = 6.400e-66 Identity = 96/135 (71.11%), Postives = 120/135 (88.89%), Query Frame = 1 Query: 64 PSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468 PS++GPR+NE+IDV VR++D +GE VGV++T+ AI+ A + GLDLVEVSPN DPPVCK+LDYG+FKY+AQKKANEARKKQK++E+KEIKMRP ID HDY KMKAV++F E GDKVK+TIRFRGRE++HQ+LGM Sbjct: 6 PSKDGPRINEDIDVAQVRVVDADGEMVGVLSTKEAIEMAFEVGLDLVEVSPNADPPVCKILDYGKFKYEAQKKANEARKKQKVIEVKEIKMRPGIDEHDYQTKMKAVRKFLENGDKVKMTIRFRGREMAHQDLGM 140
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A2D6JW27_9PROT (Translation initiation factor IF-3 n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2D6JW27_9PROT) HSP 1 Score: 207 bits (527), Expect = 7.290e-66 Identity = 95/143 (66.43%), Postives = 123/143 (86.01%), Query Frame = 1 Query: 40 IRRPMSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468 +RRP + P+REGPRVNE I+ +R+++ +GE VGV++ I+ A +AGLDLVEVSPN DPPVCK+LDYG++KY+AQKKANEARKKQK++++KEIKMRP ID HDY VKM++V+RF +EGDKVK+TIRFRGRE++HQELGM Sbjct: 2 VRRPFNQAPTREGPRVNEHIEAEKIRVVNADGEMVGVISKEEGIEIAFEAGLDLVEVSPNADPPVCKVLDYGKYKYEAQKKANEARKKQKVIDVKEIKMRPGIDEHDYQVKMRSVRRFLDEGDKVKMTIRFRGREMAHQELGM 144
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Match: A0A6N6VMI6_9HYPH (Translation initiation factor IF-3 n=2 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VMI6_9HYPH) HSP 1 Score: 207 bits (526), Expect = 1.040e-65 Identity = 103/142 (72.54%), Postives = 121/142 (85.21%), Query Frame = 1 Query: 43 RRPMSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVVTTRAAIQAAMDAGLDLVEVSPNVDPPVCKLLDYGRFKYQAQKKANEARKKQKIVEIKEIKMRPTIDIHDYGVKMKAVQRFFEEGDKVKVTIRFRGRELSHQELGM 468 RRP+ A P+REGPR+NE ID V LID EGE+ GV+ T A++ A +AGLDLVEVSPN PPVCKLLD+G+FK+QAQKKANEARKKQK VE+KEIKMRP ID HDY VKMK++ RFF+EGDKVKVT+RFRGRE++HQELGM Sbjct: 3 RRPVQAPPTREGPRINEMIDESTVLLIDAEGEKRGVIPTVEAMRMAEEAGLDLVEVSPNSKPPVCKLLDFGKFKFQAQKKANEARKKQKTVEVKEIKMRPNIDTHDYDVKMKSMLRFFDEGDKVKVTLRFRGREMAHQELGM 144 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9906.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig9906.2.1 >prot_P-wetherbeei_contig9906.2.1 ID=prot_P-wetherbeei_contig9906.2.1|Name=mRNA_P-wetherbeei_contig9906.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp SGRNLENNREVYTIRRPMSATPSREGPRVNEEIDVPNVRLIDGEGEQVGVback to top mRNA from alignment at P-wetherbeei_contig9906:1979..2446+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig9906.2.1 ID=mRNA_P-wetherbeei_contig9906.2.1|Name=mRNA_P-wetherbeei_contig9906.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig9906:1979..2446+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig9906:1979..2446+ >mRNA_P-wetherbeei_contig9906.2.1 ID=mRNA_P-wetherbeei_contig9906.2.1|Name=mRNA_P-wetherbeei_contig9906.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig9906:1979..2446+ (Phaeothamnion wetherbeei SAG_119_79)back to top |