mRNA_P-wetherbeei_contig9789.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9789.3.1
Unique NamemRNA_P-wetherbeei_contig9789.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9789.3.1 vs. uniprot
Match: UPI001BCABC09 (hypothetical protein n=1 Tax=Ancylobacter lacus TaxID=2579970 RepID=UPI001BCABC09)

HSP 1 Score: 50.8 bits (120), Expect = 1.920e-7
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 ETTRRQRYRSRAIALGLGALVVIFYVATLVRLGPNALRKDL 123
            E  RRQR RS AIA+ LGAL V+FYV T+V+LGPN L + L
Sbjct:   18 EQKRRQRSRSIAIAVVLGALCVLFYVVTIVKLGPNVLNRPL 58
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BLAST of mRNA_P-wetherbeei_contig9789.3.1 vs. uniprot
Match: UPI00182F55DD (Uncharacterized protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI00182F55DD)

HSP 1 Score: 49.7 bits (117), Expect = 5.380e-7
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 ETTRRQRYRSRAIALGLGALVVIFYVATLVRLGPNALRKDL 123
            E  RRQR RS AIA+ LGALVV+FY  T+V+LGP  L + L
Sbjct:   17 EQKRRQRARSVAIAVALGALVVLFYAITIVKLGPGVLNRPL 57
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BLAST of mRNA_P-wetherbeei_contig9789.3.1 vs. uniprot
Match: A0A562T1P8_9HYPH (Uncharacterized protein n=1 Tax=Roseibium hamelinense TaxID=150831 RepID=A0A562T1P8_9HYPH)

HSP 1 Score: 48.5 bits (114), Expect = 1.410e-6
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 ETTRRQRYRSRAIALGLGALVVIFYVATLVRLGPNALRKDL 123
            E T+R+R RS AIA  LGALVV+FYV T+V++GP  + + L
Sbjct:   13 EQTKRRRSRSIAIAFALGALVVLFYVVTIVKMGPEIMNRAL 53
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BLAST of mRNA_P-wetherbeei_contig9789.3.1 vs. uniprot
Match: UPI0004945AB4 (hypothetical protein n=1 Tax=Bosea sp. 117 TaxID=1125973 RepID=UPI0004945AB4)

HSP 1 Score: 48.5 bits (114), Expect = 1.650e-6
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 ETTRRQRYRSRAIALGLGALVVIFYVATLVRLGPNALRKDL 123
            E  RR+R RS AIAL LGAL V+FYV T+V+LGP  L + L
Sbjct:   20 EQKRRRRARSLAIALVLGALCVLFYVVTIVKLGPGVLNRPL 60
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BLAST of mRNA_P-wetherbeei_contig9789.3.1 vs. uniprot
Match: A0A7W2BT31_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7W2BT31_9HYPH)

HSP 1 Score: 48.1 bits (113), Expect = 2.400e-6
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 ETTRRQRYRSRAIALGLGALVVIFYVATLVRLGPNALRKDL 123
            E  RR+R RS AIA  LG LVV+FYV T+V+LGPN L + L
Sbjct:   21 EQRRRRRARSIAIAAVLGFLVVLFYVVTIVKLGPNVLNRPL 61
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BLAST of mRNA_P-wetherbeei_contig9789.3.1 vs. uniprot
Match: UPI001BCC127B (hypothetical protein n=1 Tax=Chelatococcus sp. YT9 TaxID=2835635 RepID=UPI001BCC127B)

HSP 1 Score: 48.1 bits (113), Expect = 4.020e-6
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    7 TRRQRYRSRAIALGLGALVVIFYVATLVRLGPNALRKDL 123
            TRR+R R+ AIAL LGALV++FYV TL RLG N + + L
Sbjct:   46 TRRRRTRNIAIALTLGALVILFYVMTLARLGSNVMNRPL 84
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BLAST of mRNA_P-wetherbeei_contig9789.3.1 vs. uniprot
Match: UPI001FF6C23F (hypothetical protein n=1 Tax=Ancylobacter sp. 6x-1 TaxID=2579147 RepID=UPI001FF6C23F)

HSP 1 Score: 47.4 bits (111), Expect = 4.730e-6
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 ETTRRQRYRSRAIALGLGALVVIFYVATLVRLGPNALRKDL 123
            E  RR+R RS AIAL LG L ++FY+ T+V+LGPN L + L
Sbjct:   20 EQKRRRRSRSVAIALVLGGLCLLFYIVTIVKLGPNVLNRPL 60
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BLAST of mRNA_P-wetherbeei_contig9789.3.1 vs. uniprot
Match: B0UFS1_METS4 (Conserved protein CoxF n=1 Tax=Methylobacterium sp. (strain 4-46) TaxID=426117 RepID=B0UFS1_METS4)

HSP 1 Score: 46.2 bits (108), Expect = 1.090e-5
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    1 ETTRRQRYRSRAIALGLGALVVIFYVATLVRLGPNALRKDL 123
            E  RR+R RS AIAL L ALV IFYV T+ +LGP  L + L
Sbjct:   10 EEARRRRKRSLAIALTLAALVAIFYVLTIAKLGPQVLNRPL 50
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BLAST of mRNA_P-wetherbeei_contig9789.3.1 vs. uniprot
Match: A0A1M7AT32_9HYPH (Uncharacterized protein n=2 Tax=Roseibium TaxID=150830 RepID=A0A1M7AT32_9HYPH)

HSP 1 Score: 46.2 bits (108), Expect = 1.160e-5
Identity = 22/41 (53.66%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 ETTRRQRYRSRAIALGLGALVVIFYVATLVRLGPNALRKDL 123
            E  +R+R RS AIAL LGALV++FYV T+V++GP  + + L
Sbjct:   13 EQAKRRRARSVAIALTLGALVLLFYVVTIVKMGPQIMSRPL 53
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BLAST of mRNA_P-wetherbeei_contig9789.3.1 vs. uniprot
Match: UPI0014042491 (hypothetical protein n=1 Tax=Labrenzia sp. 011 TaxID=2171494 RepID=UPI0014042491)

HSP 1 Score: 46.2 bits (108), Expect = 1.160e-5
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 ETTRRQRYRSRAIALGLGALVVIFYVATLVRLGPNALRKDL 123
            E  R++R RS AIA+ LGALVV+FYV T+V+LGP  + + L
Sbjct:   13 EQKRKRRARSIAIAVVLGALVVLFYVVTIVKLGPGVIDRPL 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9789.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BCABC091.920e-763.41hypothetical protein n=1 Tax=Ancylobacter lacus Ta... [more]
UPI00182F55DD5.380e-760.98Uncharacterized protein n=1 Tax=Rhodoplanes sp. Ta... [more]
A0A562T1P8_9HYPH1.410e-656.10Uncharacterized protein n=1 Tax=Roseibium hameline... [more]
UPI0004945AB41.650e-660.98hypothetical protein n=1 Tax=Bosea sp. 117 TaxID=1... [more]
A0A7W2BT31_9HYPH2.400e-660.98Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
UPI001BCC127B4.020e-661.54hypothetical protein n=1 Tax=Chelatococcus sp. YT9... [more]
UPI001FF6C23F4.730e-656.10hypothetical protein n=1 Tax=Ancylobacter sp. 6x-1... [more]
B0UFS1_METS41.090e-558.54Conserved protein CoxF n=1 Tax=Methylobacterium sp... [more]
A0A1M7AT32_9HYPH1.160e-553.66Uncharacterized protein n=2 Tax=Roseibium TaxID=15... [more]
UPI00140424911.160e-556.10hypothetical protein n=1 Tax=Labrenzia sp. 011 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9789contigP-wetherbeei_contig9789:1893..2015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1125973.JNLC01000014_gene2649
Preferred namecoxF
Model size123
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorysignal anchor
Exons1
Evalue3.17e-07
EggNOG OGs2EGEY@1|root,33A6Y@2|Bacteria,1N80G@1224|Proteobacteria,2UFIT@28211|Alphaproteobacteria,3K0X9@41294|Bradyrhizobiaceae
Cds size123
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187110.2740135-CDS-P-wetherbeei_contig9789:1892..20151683187110.2740135-CDS-P-wetherbeei_contig9789:1892..2015Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9789 1893..2015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9789.3.1prot_P-wetherbeei_contig9789.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9789 1893..2015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9789.3.1

>prot_P-wetherbeei_contig9789.3.1 ID=prot_P-wetherbeei_contig9789.3.1|Name=mRNA_P-wetherbeei_contig9789.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
ETTRRQRYRSRAIALGLGALVVIFYVATLVRLGPNALRKDL
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mRNA from alignment at P-wetherbeei_contig9789:1893..2015-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9789.3.1 ID=mRNA_P-wetherbeei_contig9789.3.1|Name=mRNA_P-wetherbeei_contig9789.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig9789:1893..2015- (Phaeothamnion wetherbeei SAG_119_79)
GAAACGACCCGGCGGCAGCGCTACCGCTCGCGTGCGATCGCGCTGGGTCT
CGGCGCCCTCGTCGTGATTTTCTACGTCGCAACCCTCGTGCGGCTTGGTC
CCAACGCCTTGCGCAAGGACTTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9789:1893..2015-

>mRNA_P-wetherbeei_contig9789.3.1 ID=mRNA_P-wetherbeei_contig9789.3.1|Name=mRNA_P-wetherbeei_contig9789.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig9789:1893..2015- (Phaeothamnion wetherbeei SAG_119_79)
GAAACGACCCGGCGGCAGCGCTACCGCTCGCGTGCGATCGCGCTGGGTCT
CGGCGCCCTCGTCGTGATTTTCTACGTCGCAACCCTCGTGCGGCTTGGTC
CCAACGCCTTGCGCAAGGACTTG
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