mRNA_P-wetherbeei_contig9760.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9760.1.1
Unique NamemRNA_P-wetherbeei_contig9760.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig9760.1.1 vs. uniprot
Match: A0A812SEL5_9DINO (Ari-2 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812SEL5_9DINO)

HSP 1 Score: 66.6 bits (161), Expect = 8.480e-12
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:    1 GVKRCPSCSVWIEKDGGCSHMSCSACRGEFCWRCRSRWSG 120
            GV++CP+C V I K+GGCSHM+C+ CR EFCW+C   WSG
Sbjct:  264 GVRKCPNCHVPILKNGGCSHMTCTRCRHEFCWQCGGAWSG 303          
BLAST of mRNA_P-wetherbeei_contig9760.1.1 vs. uniprot
Match: A0A067BQQ6_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BQQ6_SAPPC)

HSP 1 Score: 66.6 bits (161), Expect = 9.780e-12
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    1 GVKRCPSCSVWIEKDGGCSHMSCSACRGEFCWRCRSRWS 117
            G +RCP CS  IEKDGGCSH+ C+ C  +FCWRCR +W+
Sbjct:  374 GAQRCPCCSTTIEKDGGCSHIKCTYCHYDFCWRCRVKWA 412          
BLAST of mRNA_P-wetherbeei_contig9760.1.1 vs. uniprot
Match: T0Q9M7_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q9M7_SAPDV)

HSP 1 Score: 66.2 bits (160), Expect = 1.340e-11
Identity = 24/38 (63.16%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    4 VKRCPSCSVWIEKDGGCSHMSCSACRGEFCWRCRSRWS 117
             +RCP CS  IEKDGGCSHM C+ C  +FCWRCR +W+
Sbjct:  459 AQRCPQCSTTIEKDGGCSHMKCTYCHYDFCWRCRIKWA 496          
BLAST of mRNA_P-wetherbeei_contig9760.1.1 vs. uniprot
Match: A0A067BRD1_SAPPC (RING-type domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BRD1_SAPPC)

HSP 1 Score: 64.7 bits (156), Expect = 1.660e-11
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1
Query:    4 VKRCPSCSVWIEKDGGCSHMSCSACRGEFCWRCRSRWS 117
             +RCP CS  IEKDGGCSH+ C+ C  +FCWRCR +W+
Sbjct:  150 AQRCPQCSTTIEKDGGCSHIKCTYCHYDFCWRCRVKWA 187          
BLAST of mRNA_P-wetherbeei_contig9760.1.1 vs. uniprot
Match: A0A2T7NVN1_POMCA (RBR-type E3 ubiquitin transferase n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7NVN1_POMCA)

HSP 1 Score: 64.3 bits (155), Expect = 6.370e-11
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    4 VKRCPSCSVWIEKDGGCSHMSCSACRGEFCWRCRSRW 114
            VKRCP C+  IEK+GGCSHM+C+ C  EFCW C+S W
Sbjct:  803 VKRCPQCAYPIEKNGGCSHMTCTRCHKEFCWTCKSDW 839          
BLAST of mRNA_P-wetherbeei_contig9760.1.1 vs. uniprot
Match: A0A6P8HWK5_ACTTE (RBR-type E3 ubiquitin transferase n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HWK5_ACTTE)

HSP 1 Score: 63.2 bits (152), Expect = 1.630e-10
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1
Query:    4 VKRCPSCSVWIEKDGGCSHMSCSACRGEFCWRCRSRWS 117
            V+RCP C   IEKDGGC HM+C+ CRG+FCW C   W+
Sbjct:  505 VRRCPKCKYPIEKDGGCQHMTCAKCRGDFCWICLGVWN 542          
BLAST of mRNA_P-wetherbeei_contig9760.1.1 vs. uniprot
Match: A0A3Q2CPR7_CYPVA (RBR-type E3 ubiquitin transferase n=2 Tax=Cyprinodon variegatus TaxID=28743 RepID=A0A3Q2CPR7_CYPVA)

HSP 1 Score: 58.5 bits (140), Expect = 2.330e-10
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 1
Query:    4 VKRCPSCSVWIEKDGGCSHMSCSACRGEFCWRCRSRWS 117
             K+CPSC V +E++GGC HM CS CR E+CW C   W+
Sbjct:   24 TKKCPSCLVPVERNGGCMHMQCSVCRAEWCWLCGVLWN 61          
BLAST of mRNA_P-wetherbeei_contig9760.1.1 vs. uniprot
Match: A0A0J1BCM2_9TREE (RBR-type E3 ubiquitin transferase n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J1BCM2_9TREE)

HSP 1 Score: 62.4 bits (150), Expect = 3.050e-10
Identity = 23/38 (60.53%), Postives = 26/38 (68.42%), Query Frame = 1
Query:    4 VKRCPSCSVWIEKDGGCSHMSCSACRGEFCWRCRSRWS 117
             K CP C   IEK+GGC+HM+C  CRGEFCW C   WS
Sbjct:  294 TKECPKCQSTIEKNGGCNHMTCKKCRGEFCWVCMGPWS 331          
BLAST of mRNA_P-wetherbeei_contig9760.1.1 vs. uniprot
Match: A0A024U130_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U130_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.690e-10
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 1
Query:    4 VKRCPSCSVWIEKDGGCSHMSCSACRGEFCWRCRSRW 114
            VK CP C  +IEK+GGC+HM+C+ CR EFCW C  +W
Sbjct:  377 VKSCPRCKRFIEKNGGCNHMTCTQCRFEFCWSCMDKW 413          
BLAST of mRNA_P-wetherbeei_contig9760.1.1 vs. uniprot
Match: UPI001C05E3F4 (E3 ubiquitin-protein ligase parkin n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C05E3F4)

HSP 1 Score: 61.6 bits (148), Expect = 5.700e-10
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1
Query:    4 VKRCPSCSVWIEKDGGCSHMSCSACRGEFCWRCRSRWS 117
             KRCP CSV +E++GGC HM CS C+ E+CW CR  W+
Sbjct:  409 TKRCPQCSVPVERNGGCMHMQCSLCKAEWCWLCRVPWN 446          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9760.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A812SEL5_9DINO8.480e-1262.50Ari-2 protein n=1 Tax=Symbiodinium sp. CCMP2592 Ta... [more]
A0A067BQQ6_SAPPC9.780e-1261.54Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
T0Q9M7_SAPDV1.340e-1163.16Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A067BRD1_SAPPC1.660e-1160.53RING-type domain-containing protein n=1 Tax=Saprol... [more]
A0A2T7NVN1_POMCA6.370e-1164.86RBR-type E3 ubiquitin transferase n=1 Tax=Pomacea ... [more]
A0A6P8HWK5_ACTTE1.630e-1060.53RBR-type E3 ubiquitin transferase n=1 Tax=Actinia ... [more]
A0A3Q2CPR7_CYPVA2.330e-1055.26RBR-type E3 ubiquitin transferase n=2 Tax=Cyprinod... [more]
A0A0J1BCM2_9TREE3.050e-1060.53RBR-type E3 ubiquitin transferase n=1 Tax=Cutaneot... [more]
A0A024U130_9STRA5.690e-1059.46Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
UPI001C05E3F45.700e-1057.89E3 ubiquitin-protein ligase parkin n=1 Tax=Melanot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9760contigP-wetherbeei_contig9760:355..477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog112098.XP_008616317.1
PFAMsIBR
Model size123
Max annot lvl2759|Eukaryota
KEGG koko:K11968,ko:K17973
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.2e-12
EggNOG OGsKOG1815@1|root,KOG1815@2759|Eukaryota
EC2.3.2.31
Descriptionubiquitin conjugating enzyme binding
Cds size123
COG categoryO
BRITEko00000,ko01000,ko03029,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187108.9152699-CDS-P-wetherbeei_contig9760:354..4771683187108.9152699-CDS-P-wetherbeei_contig9760:354..477Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9760 355..477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9760.1.1prot_P-wetherbeei_contig9760.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9760 355..477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9760.1.1

>prot_P-wetherbeei_contig9760.1.1 ID=prot_P-wetherbeei_contig9760.1.1|Name=mRNA_P-wetherbeei_contig9760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
GVKRCPSCSVWIEKDGGCSHMSCSACRGEFCWRCRSRWSGG
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mRNA from alignment at P-wetherbeei_contig9760:355..477-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9760.1.1 ID=mRNA_P-wetherbeei_contig9760.1.1|Name=mRNA_P-wetherbeei_contig9760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig9760:355..477- (Phaeothamnion wetherbeei SAG_119_79)
GGCGTCAAGCGCTGCCCGTCCTGCTCCGTCTGGATCGAGAAGGACGGCGG CTGCAGCCACATGTCGTGCTCCGCCTGCCGAGGCGAGTTCTGCTGGCGTT GCCGCTCCAGGTGGTCGGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9760:355..477-

>mRNA_P-wetherbeei_contig9760.1.1 ID=mRNA_P-wetherbeei_contig9760.1.1|Name=mRNA_P-wetherbeei_contig9760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig9760:355..477- (Phaeothamnion wetherbeei SAG_119_79)
GGCGTCAAGCGCTGCCCGTCCTGCTCCGTCTGGATCGAGAAGGACGGCGG
CTGCAGCCACATGTCGTGCTCCGCCTGCCGAGGCGAGTTCTGCTGGCGTT
GCCGCTCCAGGTGGTCGGGCGGC
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