mRNA_P-wetherbeei_contig9732.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig9732.1.1
Unique NamemRNA_P-wetherbeei_contig9732.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig9732.1.1 vs. uniprot
Match: A0A2V0NY40_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NY40_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 4.530e-6
Identity = 35/71 (49.30%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    1 AAGAGRLEVLQWGKRQGFRFSKWSCADAAAGGHLDVLRWLRGEECGCEWGEETTWMAAMNGHLAVVQWARA 213
            AA  G L VL+W   Q        CA AAAGG L+ L  L     GCEW + T   AA +GHLAV+QWARA
Sbjct:  111 AAFHGDLAVLRWALPQRDDAGTLYCAAAAAGGQLEAL--LCARALGCEWWDSTCAAAARHGHLAVLQWARA 179
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BLAST of mRNA_P-wetherbeei_contig9732.1.1 vs. uniprot
Match: A0A2V0PEX5_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PEX5_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 1.530e-5
Identity = 34/71 (47.89%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:    1 AAGAGRLEVLQWGKRQGFRFSKWSCADAAAGGHLDVLRWLRGEECGCEWGEETTWMAAMNGHLAVVQWARA 213
            AA  G L VL+W   Q        C  AAAGG L+ L+  R    GC WG +T   AA  GHLAV+QWARA
Sbjct:   97 AAFHGDLAVLRWALPQVDNAHTLCCGAAAAGGQLEALQCAR--TLGCAWGAQTCRAAARCGHLAVLQWARA 165
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BLAST of mRNA_P-wetherbeei_contig9732.1.1 vs. uniprot
Match: A0A2V0P1G7_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P1G7_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 2.260e-5
Identity = 34/71 (47.89%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:    1 AAGAGRLEVLQWGKRQGFRFSKWSCADAAAGGHLDVLRWLRGEECGCEWGEETTWMAAMNGHLAVVQWARA 213
            AA  G L VL+W   Q        C  AAAGG L+ L+  R    GCEW E T  +AA  GHLAV++WARA
Sbjct:  110 AAFHGDLAVLRWALPQLDGDGTLYCNAAAAGGQLEALQCAR--TLGCEWDEATCAVAAQGGHLAVLRWARA 178
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BLAST of mRNA_P-wetherbeei_contig9732.1.1 vs. uniprot
Match: A0A2V0NYS1_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NYS1_9CHLO)

HSP 1 Score: 55.1 bits (131), Expect = 3.130e-5
Identity = 34/71 (47.89%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:    1 AAGAGRLEVLQWGKRQGFRFSKWSCADAAAGGHLDVLRWLRGEECGCEWGEETTWMAAMNGHLAVVQWARA 213
            AA  G L  L W   +    +   C  AAAGG L+ LR  R    GC WGE+T   AA  GHLAV+QWARA
Sbjct:   96 AAFHGDLAALGWTLPRLDDSATLYCEAAAAGGQLEALRCARA--LGCAWGEDTCSFAAGGGHLAVLQWARA 164
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BLAST of mRNA_P-wetherbeei_contig9732.1.1 vs. uniprot
Match: A0A7S3FLX4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FLX4_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 3.580e-5
Identity = 22/53 (41.51%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:    1 AAGAGRLEVLQWGKRQGFRFSKWSCADAAAGGHLDVLRWLRGEECGCEWGEET 159
            A   G +EV ++ + +G+ F   +C  AA GGHL+ L+WLRG++  C W E T
Sbjct:   32 AGHGGSVEVFEYIRGKGYGFDVMACYMAALGGHLEALKWLRGQDPPCRWDEHT 84
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig9732.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V0NY40_9CHLO4.530e-649.30Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A2V0PEX5_9CHLO1.530e-547.89Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A2V0P1G7_9CHLO2.260e-547.89Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A2V0NYS1_9CHLO3.130e-547.89Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A7S3FLX4_9CHLO3.580e-541.51Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig9732contigP-wetherbeei_contig9732:1539..2306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog38833.XP_003062400.1
Model size768
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.00021
EggNOG OGs2EXDR@1|root,2SZ34@2759|Eukaryota,382JK@33090|Viridiplantae
Cds size768
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187107.4309046-CDS-P-wetherbeei_contig9732:1538..23061683187107.4309046-CDS-P-wetherbeei_contig9732:1538..2306Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig9732 1539..2306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig9732.1.1prot_P-wetherbeei_contig9732.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig9732 1539..2306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig9732.1.1

>prot_P-wetherbeei_contig9732.1.1 ID=prot_P-wetherbeei_contig9732.1.1|Name=mRNA_P-wetherbeei_contig9732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=256bp
AAGAGRLEVLQWGKRQGFRFSKWSCADAAAGGHLDVLRWLRGEECGCEWG
EETTWMAAMNGHLAVVQWARANGCQWSEQASWCAAANGHLHVLQYLRANN
CPWDAWTPIISAENGHMNVLNWAILNGAPVDVQVCQMAARRGDLRMLRWA
RDHGCPWSELTMAAAAENGHLDVLIWLRRHGCPVDEYAAANAASHGHLEV
LQWVVANGFPWDKECCSRARKWAKRGGDRRLLAWIHANNSPCGHRPGHEE
ESGEL*
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mRNA from alignment at P-wetherbeei_contig9732:1539..2306-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig9732.1.1 ID=mRNA_P-wetherbeei_contig9732.1.1|Name=mRNA_P-wetherbeei_contig9732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig9732:1539..2306- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGGCGCTGGCCGCCTCGAAGTCCTGCAATGGGGGAAGCGGCAAGG
CTTTCGATTTTCAAAGTGGAGCTGCGCGGACGCCGCCGCCGGCGGCCACC
TCGACGTCCTCCGCTGGCTCCGGGGCGAGGAGTGCGGCTGCGAGTGGGGC
GAAGAAACGACGTGGATGGCTGCAATGAACGGCCACCTCGCCGTCGTCCA
ATGGGCCCGGGCTAACGGCTGCCAGTGGTCCGAGCAAGCGAGCTGGTGCG
CCGCGGCAAACGGCCATCTCCACGTCCTCCAGTATCTGCGCGCCAACAAC
TGCCCTTGGGACGCTTGGACGCCGATCATCTCGGCCGAGAATGGACACAT
GAACGTCTTGAATTGGGCCATCCTCAACGGCGCGCCCGTGGACGTGCAAG
TGTGCCAGATGGCGGCGCGGCGCGGCGACCTGCGCATGCTCCGCTGGGCC
CGCGACCACGGCTGCCCGTGGAGCGAGCTGACAATGGCAGCGGCCGCAGA
GAATGGACATCTTGACGTCTTGATCTGGCTGCGGCGGCACGGCTGCCCCG
TCGACGAATACGCAGCAGCCAACGCTGCGTCGCACGGCCACCTGGAGGTT
CTTCAGTGGGTCGTTGCCAACGGGTTTCCTTGGGACAAGGAGTGCTGTTC
GAGGGCGCGGAAGTGGGCCAAGCGCGGCGGCGACCGCCGTTTGCTGGCGT
GGATCCACGCCAACAACTCGCCCTGCGGGCATCGCCCTGGGCATGAGGAA
GAAAGCGGTGAGCTCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig9732:1539..2306-

>mRNA_P-wetherbeei_contig9732.1.1 ID=mRNA_P-wetherbeei_contig9732.1.1|Name=mRNA_P-wetherbeei_contig9732.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig9732:1539..2306- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGGCGCTGGCCGCCTCGAAGTCCTGCAATGGGGGAAGCGGCAAGG
CTTTCGATTTTCAAAGTGGAGCTGCGCGGACGCCGCCGCCGGCGGCCACC
TCGACGTCCTCCGCTGGCTCCGGGGCGAGGAGTGCGGCTGCGAGTGGGGC
GAAGAAACGACGTGGATGGCTGCAATGAACGGCCACCTCGCCGTCGTCCA
ATGGGCCCGGGCTAACGGCTGCCAGTGGTCCGAGCAAGCGAGCTGGTGCG
CCGCGGCAAACGGCCATCTCCACGTCCTCCAGTATCTGCGCGCCAACAAC
TGCCCTTGGGACGCTTGGACGCCGATCATCTCGGCCGAGAATGGACACAT
GAACGTCTTGAATTGGGCCATCCTCAACGGCGCGCCCGTGGACGTGCAAG
TGTGCCAGATGGCGGCGCGGCGCGGCGACCTGCGCATGCTCCGCTGGGCC
CGCGACCACGGCTGCCCGTGGAGCGAGCTGACAATGGCAGCGGCCGCAGA
GAATGGACATCTTGACGTCTTGATCTGGCTGCGGCGGCACGGCTGCCCCG
TCGACGAATACGCAGCAGCCAACGCTGCGTCGCACGGCCACCTGGAGGTT
CTTCAGTGGGTCGTTGCCAACGGGTTTCCTTGGGACAAGGAGTGCTGTTC
GAGGGCGCGGAAGTGGGCCAAGCGCGGCGGCGACCGCCGTTTGCTGGCGT
GGATCCACGCCAACAACTCGCCCTGCGGGCATCGCCCTGGGCATGAGGAA
GAAAGCGGTGAGCTCTAG
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