mRNA_P-wetherbeei_contig888.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig888.5.1
Unique NamemRNA_P-wetherbeei_contig888.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: D8LJI3_ECTSI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 2.820e-48
Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 1
Query:   28 MATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEE 279
            MA RLLPLELIDKCIGSRLWIIMKG+KELVGTLRGFDDYVNMVLDDVTE+E+DADGTKR++ LDQILLNGNNVA+LVPGG+PE+
Sbjct:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQILLNGNNVAMLVPGGSPED 84          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.460e-43
Identity = 67/83 (80.72%), Postives = 80/83 (96.39%), Query Frame = 1
Query:   28 MATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPE 276
            MA RL+PLELIDKCIGS+LWIIMKG+KELVGTLRGFDDYVNMVL+DVTE+E+DA+G +R+V L+QILLNGNNVA+LVPGG+P+
Sbjct:    1 MAGRLMPLELIDKCIGSKLWIIMKGDKELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQILLNGNNVALLVPGGSPD 83          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A067CXC5_SAPPC (U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC)

HSP 1 Score: 142 bits (358), Expect = 3.990e-42
Identity = 67/83 (80.72%), Postives = 77/83 (92.77%), Query Frame = 1
Query:   37 RLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEED 285
            RLLPLELIDKCIGSR+WIIMKG+KE VGTLRGFDDYVNMVLDDVTE+E+  +G KRKVH+DQ+LLNGNNV +LVPGG+PE E+
Sbjct:    5 RLLPLELIDKCIGSRMWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQVLLNGNNVCLLVPGGSPEGEE 86          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A024UWN5_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWN5_9STRA)

HSP 1 Score: 139 bits (349), Expect = 9.110e-41
Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 1
Query:   28 MAT--RLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEEDS 288
            MAT  RLLPLELIDKCIGSR+WIIMKG+KE VGTLRGFDDYVNMVLDDV E+EI  +G KRKV +DQ+LLNGNNV +LVPGG PEEE++
Sbjct:    1 MATQRRLLPLELIDKCIGSRIWIIMKGDKEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKVKVDQVLLNGNNVCLLVPGGNPEEENA 88          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A7S2SPY3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPY3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.400e-39
Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 1
Query:    4 GQRKGWRAMATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEE 282
            G+R+    M+ + LPL +IDKCIGSRLW+IMKG+KELVGTLRGFDDYVNMVLDDVTE+EI  +G KR   L+QILLNGNN+A+LVPGG PE++
Sbjct:   16 GEREASGKMSGKKLPLAIIDKCIGSRLWVIMKGDKELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRATRLEQILLNGNNIALLVPGGDPEQQ 107          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: K3W4W8_GLOUD (U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD)

HSP 1 Score: 134 bits (337), Expect = 5.620e-39
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 1
Query:   34 TRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEE 282
            +RLLPLELIDKCIGSRLWIIMKG+KE +GTLRGFDDYVNMVLDDVTE+EI  +G KR++ LDQ+LLNGNN+ +LVPGG P  E
Sbjct:    4 SRLLPLELIDKCIGSRLWIIMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQVLLNGNNICLLVPGGFPTTE 85          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A8K1CS49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS49_PYTOL)

HSP 1 Score: 132 bits (332), Expect = 3.250e-38
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 1
Query:   31 ATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEE 279
            A RLLPLELIDKCIGS++WIIMKG+KE VGTLRGFDDYVNMVLDDVTEFEI  +G K++V L+Q+LLNGNNV +LVPGG P +
Sbjct:    3 AGRLLPLELIDKCIGSQIWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEFEITPEG-KKEVKLEQVLLNGNNVCLLVPGGFPSD 84          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A024G4D3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4D3_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.250e-38
Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 1
Query:   37 RLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEE 279
            R+LPLELIDKCIGSRLWI+M+G+KE VGTLRGFDDYVNMVLDDVTEFE+   G KR+  LDQ+LLNGNNV +L+PGG PE+
Sbjct:    5 RVLPLELIDKCIGSRLWIVMQGDKEFVGTLRGFDDYVNMVLDDVTEFELTPSG-KRQTELDQVLLNGNNVCMLIPGGMPED 84          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A7S4M2I3_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2I3_9EUKA)

HSP 1 Score: 132 bits (332), Expect = 5.380e-38
Identity = 63/86 (73.26%), Postives = 76/86 (88.37%), Query Frame = 1
Query:   22 RAMATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEE 279
            R   +++LPLELIDKCIGS++W+IM+G+KE+VGTLRGFDDYVNMVL+DVTE+EI ADG KR   LDQILLNGNNVA+LVPGG P +
Sbjct:   17 RDTMSQVLPLELIDKCIGSKMWVIMRGDKEIVGTLRGFDDYVNMVLEDVTEYEITADG-KRTTKLDQILLNGNNVALLVPGGDPSQ 101          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: W2LTZ1_PHYPR (U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=Phytophthora TaxID=4783 RepID=W2LTZ1_PHYPR)

HSP 1 Score: 131 bits (330), Expect = 1.260e-37
Identity = 62/79 (78.48%), Postives = 72/79 (91.14%), Query Frame = 1
Query:   37 RLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAP 273
            R+LPLELIDKCIGS+LWI+MKG+KE +GTLRGFDDYVNMVLDDVTE+EI  +G KR+V LDQ+LLNGNNV +LVPGG P
Sbjct:   27 RILPLELIDKCIGSKLWIVMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQVLLNGNNVCLLVPGGFP 104          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI3_ECTSI2.820e-4888.10U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=E... [more]
A0A835ZDD9_9STRA1.460e-4380.72U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
A0A067CXC5_SAPPC3.990e-4280.72U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=S... [more]
A0A024UWN5_9STRA9.110e-4178.65U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=A... [more]
A0A7S2SPY3_9STRA4.400e-3969.89U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=R... [more]
K3W4W8_GLOUD5.620e-3977.11U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=... [more]
A0A8K1CS49_PYTOL3.250e-3877.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024G4D3_9STRA3.250e-3876.54U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=A... [more]
A0A7S4M2I3_9EUKA5.380e-3873.26U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
W2LTZ1_PHYPR1.260e-3778.48U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig888contigP-wetherbeei_contig888:7009..7341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJI3
Preferred nameLSM5
PFAMsLSM
Model size333
Max annot lvl2759|Eukaryota
KEGG koko:K12624
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008380,GO:0009056,GO:0009057,GO:0009414,GO:0009415,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0022613,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0033993,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0042221,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0046982,GO:0046983,GO:0048519,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097305,GO:0097525,GO:0097526,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1990726,GO:1990904
Exons1
Evalue3.98e-49
EggNOG OGsCOG1958@1|root,KOG1775@2759|Eukaryota
Ec32 ortholog descriptionSm-like protein LSm5
Ec32 orthologEc-17_002110.1
Descriptionnuclear-transcribed mRNA catabolic process
Cds size270
COG categoryK
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187064.230228-UTR-P-wetherbeei_contig888:7008..70351683187064.230228-UTR-P-wetherbeei_contig888:7008..7035Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig888 7009..7035 +
1683187064.2626958-UTR-P-wetherbeei_contig888:7305..73411683187064.2626958-UTR-P-wetherbeei_contig888:7305..7341Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig888 7306..7341 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187064.2401361-CDS-P-wetherbeei_contig888:7035..73051683187064.2401361-CDS-P-wetherbeei_contig888:7035..7305Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig888 7036..7305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig888.5.1prot_P-wetherbeei_contig888.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig888 7036..7305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig888.5.1

>prot_P-wetherbeei_contig888.5.1 ID=prot_P-wetherbeei_contig888.5.1|Name=mRNA_P-wetherbeei_contig888.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEF
EIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEEDSTG*
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mRNA from alignment at P-wetherbeei_contig888:7009..7341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig888.5.1 ID=mRNA_P-wetherbeei_contig888.5.1|Name=mRNA_P-wetherbeei_contig888.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig888:7009..7341+ (Phaeothamnion wetherbeei SAG_119_79)
TGGGGACAGAGAAAAGGCTGGAGAGCGATGGCGACGCGACTGCTCCCGCT CGAACTGATTGATAAGTGTATCGGATCCCGCCTCTGGATCATCATGAAGG GCGAGAAGGAGCTCGTGGGGACGCTGCGCGGATTCGACGACTATGTCAAT ATGGTGCTGGACGACGTGACGGAGTTCGAGATTGACGCCGACGGCACAAA GCGGAAGGTGCACCTCGATCAAATCCTTTTGAACGGGAACAACGTCGCGA TTCTCGTGCCAGGAGGAGCACCCGAGGAAGAGGATTCAACAGGATGAAAA CAAGATGAAGTTAAGCAATACATTAAATCCCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig888:7009..7341+

>mRNA_P-wetherbeei_contig888.5.1 ID=mRNA_P-wetherbeei_contig888.5.1|Name=mRNA_P-wetherbeei_contig888.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig888:7009..7341+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACGCGACTGCTCCCGCTCGAACTGATTGATAAGTGTATCGGATC
CCGCCTCTGGATCATCATGAAGGGCGAGAAGGAGCTCGTGGGGACGCTGC
GCGGATTCGACGACTATGTCAATATGGTGCTGGACGACGTGACGGAGTTC
GAGATTGACGCCGACGGCACAAAGCGGAAGGTGCACCTCGATCAAATCCT
TTTGAACGGGAACAACGTCGCGATTCTCGTGCCAGGAGGAGCACCCGAGG
AAGAGGATTCAACAGGATGA
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