prot_P-wetherbeei_contig888.5.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig888.5.1
Unique Nameprot_P-wetherbeei_contig888.5.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length90
Homology
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: D8LJI3_ECTSI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 2.430e-48
Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 0
Query:    1 MATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEE 84
            MA RLLPLELIDKCIGSRLWIIMKG+KELVGTLRGFDDYVNMVLDDVTE+E+DADGTKR++ LDQILLNGNNVA+LVPGG+PE+
Sbjct:    1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQILLNGNNVAMLVPGGSPED 84          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA)

HSP 1 Score: 144 bits (364), Expect = 1.790e-43
Identity = 67/83 (80.72%), Postives = 80/83 (96.39%), Query Frame = 0
Query:    1 MATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPE 83
            MA RL+PLELIDKCIGS+LWIIMKG+KELVGTLRGFDDYVNMVL+DVTE+E+DA+G +R+V L+QILLNGNNVA+LVPGG+P+
Sbjct:    1 MAGRLMPLELIDKCIGSKLWIIMKGDKELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQILLNGNNVALLVPGGSPD 83          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A067CXC5_SAPPC (U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC)

HSP 1 Score: 141 bits (356), Expect = 3.450e-42
Identity = 67/83 (80.72%), Postives = 77/83 (92.77%), Query Frame = 0
Query:    4 RLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEED 86
            RLLPLELIDKCIGSR+WIIMKG+KE VGTLRGFDDYVNMVLDDVTE+E+  +G KRKVH+DQ+LLNGNNV +LVPGG+PE E+
Sbjct:    5 RLLPLELIDKCIGSRMWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQVLLNGNNVCLLVPGGSPEGEE 86          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A024UWN5_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWN5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 7.910e-41
Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 0
Query:    1 MAT--RLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEEDS 87
            MAT  RLLPLELIDKCIGSR+WIIMKG+KE VGTLRGFDDYVNMVLDDV E+EI  +G KRKV +DQ+LLNGNNV +LVPGG PEEE++
Sbjct:    1 MATQRRLLPLELIDKCIGSRIWIIMKGDKEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKVKVDQVLLNGNNVCLLVPGGNPEEENA 88          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: K3W4W8_GLOUD (U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD)

HSP 1 Score: 133 bits (335), Expect = 4.890e-39
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 0
Query:    3 TRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEE 85
            +RLLPLELIDKCIGSRLWIIMKG+KE +GTLRGFDDYVNMVLDDVTE+EI  +G KR++ LDQ+LLNGNN+ +LVPGG P  E
Sbjct:    4 SRLLPLELIDKCIGSRLWIIMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQVLLNGNNICLLVPGGFPTTE 85          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A8K1CS49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS49_PYTOL)

HSP 1 Score: 131 bits (330), Expect = 2.830e-38
Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 0
Query:    2 ATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEE 84
            A RLLPLELIDKCIGS++WIIMKG+KE VGTLRGFDDYVNMVLDDVTEFEI  +G K++V L+Q+LLNGNNV +LVPGG P +
Sbjct:    3 AGRLLPLELIDKCIGSQIWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEFEITPEG-KKEVKLEQVLLNGNNVCLLVPGGFPSD 84          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A024G4D3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4D3_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.830e-38
Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 0
Query:    4 RLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEE 84
            R+LPLELIDKCIGSRLWI+M+G+KE VGTLRGFDDYVNMVLDDVTEFE+   G KR+  LDQ+LLNGNNV +L+PGG PE+
Sbjct:    5 RVLPLELIDKCIGSRLWIVMQGDKEFVGTLRGFDDYVNMVLDDVTEFELTPSG-KRQTELDQVLLNGNNVCMLIPGGMPED 84          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A7S2SPY3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPY3_9STRA)

HSP 1 Score: 131 bits (330), Expect = 6.340e-38
Identity = 63/85 (74.12%), Postives = 75/85 (88.24%), Query Frame = 0
Query:    1 MATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEE 85
            M+ + LPL +IDKCIGSRLW+IMKG+KELVGTLRGFDDYVNMVLDDVTE+EI  +G KR   L+QILLNGNN+A+LVPGG PE++
Sbjct:   24 MSGKKLPLAIIDKCIGSRLWVIMKGDKELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRATRLEQILLNGNNIALLVPGGDPEQQ 107          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A7S4M2I3_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2I3_9EUKA)

HSP 1 Score: 131 bits (329), Expect = 6.660e-38
Identity = 62/82 (75.61%), Postives = 75/82 (91.46%), Query Frame = 0
Query:    3 TRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEE 84
            +++LPLELIDKCIGS++W+IM+G+KE+VGTLRGFDDYVNMVL+DVTE+EI ADG KR   LDQILLNGNNVA+LVPGG P +
Sbjct:   21 SQVLPLELIDKCIGSKMWVIMRGDKEIVGTLRGFDDYVNMVLEDVTEYEITADG-KRTTKLDQILLNGNNVALLVPGGDPSQ 101          
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: W2LTZ1_PHYPR (U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=Phytophthora TaxID=4783 RepID=W2LTZ1_PHYPR)

HSP 1 Score: 130 bits (327), Expect = 1.560e-37
Identity = 62/79 (78.48%), Postives = 72/79 (91.14%), Query Frame = 0
Query:    4 RLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAP 82
            R+LPLELIDKCIGS+LWI+MKG+KE +GTLRGFDDYVNMVLDDVTE+EI  +G KR+V LDQ+LLNGNNV +LVPGG P
Sbjct:   27 RILPLELIDKCIGSKLWIVMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQVLLNGNNVCLLVPGGFP 104          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJI3_ECTSI2.430e-4888.10U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=E... [more]
A0A835ZDD9_9STRA1.790e-4380.72U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=T... [more]
A0A067CXC5_SAPPC3.450e-4280.72U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=S... [more]
A0A024UWN5_9STRA7.910e-4178.65U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=A... [more]
K3W4W8_GLOUD4.890e-3977.11U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=... [more]
A0A8K1CS49_PYTOL2.830e-3877.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024G4D3_9STRA2.830e-3876.54U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=A... [more]
A0A7S2SPY3_9STRA6.340e-3874.12U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=R... [more]
A0A7S4M2I3_9EUKA6.660e-3875.61U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=P... [more]
W2LTZ1_PHYPR1.560e-3778.48U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..78
e-value: 2.9E-22
score: 90.0
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..78
e-value: 9.5E-21
score: 73.3
NoneNo IPR availableGENE3D2.30.30.100coord: 6..83
e-value: 1.1E-26
score: 94.4
NoneNo IPR availablePANTHERPTHR20971:SF0U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5coord: 3..83
IPR033871Sm-like protein LSm5PANTHERPTHR20971U6 SNRNA-ASSOCIATED PROTEINcoord: 3..83
IPR033871Sm-like protein LSm5CDDcd01732LSm5coord: 5..80
e-value: 5.91384E-46
score: 140.072
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 6..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig888contigP-wetherbeei_contig888:7036..7305 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig888.5.1mRNA_P-wetherbeei_contig888.5.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig888 7009..7341 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig888.5.1 ID=prot_P-wetherbeei_contig888.5.1|Name=mRNA_P-wetherbeei_contig888.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
MATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEF
EIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEEDSTG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR033871LSm5
IPR010920LSM_dom_sf