mRNA_P-wetherbeei_contig888.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: D8LJI3_ECTSI (U6 snRNA-associated Sm-like protein LSm5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJI3_ECTSI) HSP 1 Score: 157 bits (398), Expect = 2.820e-48 Identity = 74/84 (88.10%), Postives = 82/84 (97.62%), Query Frame = 1
Query: 28 MATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEE 279
MA RLLPLELIDKCIGSRLWIIMKG+KELVGTLRGFDDYVNMVLDDVTE+E+DADGTKR++ LDQILLNGNNVA+LVPGG+PE+
Sbjct: 1 MAARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQLDQILLNGNNVAMLVPGGSPED 84
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A835ZDD9_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD9_9STRA) HSP 1 Score: 145 bits (367), Expect = 1.460e-43 Identity = 67/83 (80.72%), Postives = 80/83 (96.39%), Query Frame = 1
Query: 28 MATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPE 276
MA RL+PLELIDKCIGS+LWIIMKG+KELVGTLRGFDDYVNMVL+DVTE+E+DA+G +R+V L+QILLNGNNVA+LVPGG+P+
Sbjct: 1 MAGRLMPLELIDKCIGSKLWIIMKGDKELVGTLRGFDDYVNMVLEDVTEYEVDAEGVRREVKLEQILLNGNNVALLVPGGSPD 83
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A067CXC5_SAPPC (U6 snRNA-associated Sm-like protein LSm5 n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CXC5_SAPPC) HSP 1 Score: 142 bits (358), Expect = 3.990e-42 Identity = 67/83 (80.72%), Postives = 77/83 (92.77%), Query Frame = 1
Query: 37 RLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEED 285
RLLPLELIDKCIGSR+WIIMKG+KE VGTLRGFDDYVNMVLDDVTE+E+ +G KRKVH+DQ+LLNGNNV +LVPGG+PE E+
Sbjct: 5 RLLPLELIDKCIGSRMWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEYEVTPEG-KRKVHVDQVLLNGNNVCLLVPGGSPEGEE 86
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A024UWN5_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UWN5_9STRA) HSP 1 Score: 139 bits (349), Expect = 9.110e-41 Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 1
Query: 28 MAT--RLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEEDS 288
MAT RLLPLELIDKCIGSR+WIIMKG+KE VGTLRGFDDYVNMVLDDV E+EI +G KRKV +DQ+LLNGNNV +LVPGG PEEE++
Sbjct: 1 MATQRRLLPLELIDKCIGSRIWIIMKGDKEFVGTLRGFDDYVNMVLDDVIEYEITPEG-KRKVKVDQVLLNGNNVCLLVPGGNPEEENA 88
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A7S2SPY3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPY3_9STRA) HSP 1 Score: 135 bits (340), Expect = 4.400e-39 Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 1
Query: 4 GQRKGWRAMATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEE 282
G+R+ M+ + LPL +IDKCIGSRLW+IMKG+KELVGTLRGFDDYVNMVLDDVTE+EI +G KR L+QILLNGNN+A+LVPGG PE++
Sbjct: 16 GEREASGKMSGKKLPLAIIDKCIGSRLWVIMKGDKELVGTLRGFDDYVNMVLDDVTEYEITPEG-KRATRLEQILLNGNNIALLVPGGDPEQQ 107
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: K3W4W8_GLOUD (U6 snRNA-associated Sm-like protein LSm5 n=13 Tax=Oomycota TaxID=4762 RepID=K3W4W8_GLOUD) HSP 1 Score: 134 bits (337), Expect = 5.620e-39 Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 1
Query: 34 TRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEEE 282
+RLLPLELIDKCIGSRLWIIMKG+KE +GTLRGFDDYVNMVLDDVTE+EI +G KR++ LDQ+LLNGNN+ +LVPGG P E
Sbjct: 4 SRLLPLELIDKCIGSRLWIIMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREIKLDQVLLNGNNICLLVPGGFPTTE 85
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A8K1CS49_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS49_PYTOL) HSP 1 Score: 132 bits (332), Expect = 3.250e-38 Identity = 64/83 (77.11%), Postives = 74/83 (89.16%), Query Frame = 1
Query: 31 ATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEE 279
A RLLPLELIDKCIGS++WIIMKG+KE VGTLRGFDDYVNMVLDDVTEFEI +G K++V L+Q+LLNGNNV +LVPGG P +
Sbjct: 3 AGRLLPLELIDKCIGSQIWIIMKGDKEFVGTLRGFDDYVNMVLDDVTEFEITPEG-KKEVKLEQVLLNGNNVCLLVPGGFPSD 84
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A024G4D3_9STRA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4D3_9STRA) HSP 1 Score: 132 bits (332), Expect = 3.250e-38 Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = 1
Query: 37 RLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEE 279
R+LPLELIDKCIGSRLWI+M+G+KE VGTLRGFDDYVNMVLDDVTEFE+ G KR+ LDQ+LLNGNNV +L+PGG PE+
Sbjct: 5 RVLPLELIDKCIGSRLWIVMQGDKEFVGTLRGFDDYVNMVLDDVTEFELTPSG-KRQTELDQVLLNGNNVCMLIPGGMPED 84
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: A0A7S4M2I3_9EUKA (U6 snRNA-associated Sm-like protein LSm5 n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M2I3_9EUKA) HSP 1 Score: 132 bits (332), Expect = 5.380e-38 Identity = 63/86 (73.26%), Postives = 76/86 (88.37%), Query Frame = 1
Query: 22 RAMATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAPEE 279
R +++LPLELIDKCIGS++W+IM+G+KE+VGTLRGFDDYVNMVL+DVTE+EI ADG KR LDQILLNGNNVA+LVPGG P +
Sbjct: 17 RDTMSQVLPLELIDKCIGSKMWVIMRGDKEIVGTLRGFDDYVNMVLEDVTEYEITADG-KRTTKLDQILLNGNNVALLVPGGDPSQ 101
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Match: W2LTZ1_PHYPR (U6 snRNA-associated Sm-like protein LSm5 n=9 Tax=Phytophthora TaxID=4783 RepID=W2LTZ1_PHYPR) HSP 1 Score: 131 bits (330), Expect = 1.260e-37 Identity = 62/79 (78.48%), Postives = 72/79 (91.14%), Query Frame = 1
Query: 37 RLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFEIDADGTKRKVHLDQILLNGNNVAILVPGGAP 273
R+LPLELIDKCIGS+LWI+MKG+KE +GTLRGFDDYVNMVLDDVTE+EI +G KR+V LDQ+LLNGNNV +LVPGG P
Sbjct: 27 RILPLELIDKCIGSKLWIVMKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEG-KREVKLDQVLLNGNNVCLLVPGGFP 104 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig888.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig888.5.1 >prot_P-wetherbeei_contig888.5.1 ID=prot_P-wetherbeei_contig888.5.1|Name=mRNA_P-wetherbeei_contig888.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp MATRLLPLELIDKCIGSRLWIIMKGEKELVGTLRGFDDYVNMVLDDVTEFback to top mRNA from alignment at P-wetherbeei_contig888:7009..7341+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig888.5.1 ID=mRNA_P-wetherbeei_contig888.5.1|Name=mRNA_P-wetherbeei_contig888.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=333bp|location=Sequence derived from alignment at P-wetherbeei_contig888:7009..7341+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig888:7009..7341+ >mRNA_P-wetherbeei_contig888.5.1 ID=mRNA_P-wetherbeei_contig888.5.1|Name=mRNA_P-wetherbeei_contig888.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig888:7009..7341+ (Phaeothamnion wetherbeei SAG_119_79)back to top |