mRNA_P-wetherbeei_contig8852.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig8852.2.1
Unique NamemRNA_P-wetherbeei_contig8852.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig8852.2.1 vs. uniprot
Match: A0A2V0PJ83_9CHLO (Peptidase S59 domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PJ83_9CHLO)

HSP 1 Score: 62.8 bits (151), Expect = 1.100e-6
Identity = 44/91 (48.35%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:  715 SAGTKALMNVVTAMPAYQNRSLEELRWEDYQRA-KGVGPPPQPL------PQQQPTASLFGSAPRAGGGLFGAPAPAPAAFGA-APASAFG 963
            SAG     N +TA+PAY N+S+EELRWEDYQ   K     P P       P  QP    FG++P      FGA APA   FGA APAS FG
Sbjct:  233 SAGAAVYYNTITALPAYANKSVEELRWEDYQAGVKNASAAPAPAGGGFGTPASQPAFGGFGASPAP---AFGAAAPAANPFGAPAPASPFG 320
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BLAST of mRNA_P-wetherbeei_contig8852.2.1 vs. uniprot
Match: A0A6A0A546_HAELA (Nuclear pore complex NUP98A isoform X1 isoform B n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A546_HAELA)

HSP 1 Score: 61.2 bits (147), Expect = 1.530e-6
Identity = 45/91 (49.45%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:  745 VTAMPAYQNRSLEELRWEDYQ---RAKGVGPPPQPLPQQQPTASLFGSAPRAGGGLFGAPAPAP---AAFGAAPAS----AFGTTATGAGG 987
            +TAMPAY ++S+EELRWEDYQ   ++   GP P P      T   FGSAP A  G FGA AP P   + FGA PA+    AFG  +T A G
Sbjct:   41 ITAMPAYLSKSMEELRWEDYQQGVKSAAAGPAPAPASPFGSTPGAFGSAP-ATTGAFGAAAPNPFGASVFGAQPATTSPPAFGAASTPAFG 130
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BLAST of mRNA_P-wetherbeei_contig8852.2.1 vs. uniprot
Match: A0A3Q3E3G4_9LABR (Nuclear pore complex protein Nup98-Nup96 n=1 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3E3G4_9LABR)

HSP 1 Score: 60.1 bits (144), Expect = 7.610e-6
Identity = 73/199 (36.68%), Postives = 89/199 (44.72%), Query Frame = 1 
Query:  433 AFGAPAPXXXGLFGTGGATSTFGRTTTGSLFGQPAPAPSASPFGQATQQGSSLFGXXXXXXXXXGFATGXXXXXXXXXXXXXXXXXAPPV--HTQDSAGTKALMNV----VTAMPAYQNRSLEELRWEDYQRAKGVGPPPQPLPQQQPTASLFGSAPR---AGGGLFGAPAPAPA--------AFGAAPASAFGTTATG 978
            AF A  P   G FGT         T++G LFG  + A +A+PFG      +SLFG         GF+                    PP    T   AG    +N     +TAM  Y+N+SLEELR EDYQ  +  GP     P   PT S+FG+AP    A  GLFGA AP  +         FGA PA+ FG TA G
Sbjct:  101 AFSANKPTSFGSFGT--------STSSGGLFGATSTA-TANPFGGT----ASLFGGA-------GFSA--------TQQPGTTVKFNPPTGSDTMVKAGVTTNINTKHQCITAMKEYENKSLEELRLEDYQAGR-KGPT---TPMAAPTGSMFGAAPATSSAATGLFGATAPNTSFSFGPNKSTFGATPAAGFGATAGG 267
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BLAST of mRNA_P-wetherbeei_contig8852.2.1 vs. uniprot
Match: A0A3Q3KX26_9LABR (Nuclear pore complex protein Nup98-Nup96 n=5 Tax=Labrus bergylta TaxID=56723 RepID=A0A3Q3KX26_9LABR)

HSP 1 Score: 60.1 bits (144), Expect = 7.660e-6
Identity = 73/199 (36.68%), Postives = 89/199 (44.72%), Query Frame = 1 
Query:  433 AFGAPAPXXXGLFGTGGATSTFGRTTTGSLFGQPAPAPSASPFGQATQQGSSLFGXXXXXXXXXGFATGXXXXXXXXXXXXXXXXXAPPV--HTQDSAGTKALMNV----VTAMPAYQNRSLEELRWEDYQRAKGVGPPPQPLPQQQPTASLFGSAPR---AGGGLFGAPAPAPA--------AFGAAPASAFGTTATG 978
            AF A  P   G FGT         T++G LFG  + A +A+PFG      +SLFG         GF+                    PP    T   AG    +N     +TAM  Y+N+SLEELR EDYQ  +  GP     P   PT S+FG+AP    A  GLFGA AP  +         FGA PA+ FG TA G
Sbjct:  120 AFSANKPTSFGSFGT--------STSSGGLFGATSTA-TANPFGGT----ASLFGGA-------GFSA--------TQQPGTTVKFNPPTGSDTMVKAGVTTNINTKHQCITAMKEYENKSLEELRLEDYQAGR-KGPT---TPMAAPTGSMFGAAPATSSAATGLFGATAPNTSFSFGPNKSTFGATPAAGFGATAGG 286
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BLAST of mRNA_P-wetherbeei_contig8852.2.1 vs. uniprot
Match: A0A671V005_SPAAU (Nuclear pore complex protein Nup98-Nup96 n=6 Tax=Sparus aurata TaxID=8175 RepID=A0A671V005_SPAAU)

HSP 1 Score: 58.9 bits (141), Expect = 1.760e-5
Identity = 77/200 (38.50%), Postives = 90/200 (45.00%), Query Frame = 1 
Query:  433 AFGAPAPXXXGLFGTGGATSTFGRTTTGSLFGQPAPAPSASPFGQATQQGSSLFGXXXXXXXXXGFATGXXXXXXXXXXXXXXXXXAPPV--HTQDSAGTKALMNV----VTAMPAYQNRSLEELRWEDYQRAKGVGPPPQPLPQQQPTASLFGSAPRAGG---GLFGAPAP--------APAAFGAAPASAFGT-TATG 978
            AFGA  P   G FGT         T++G LFG  A   +++PFG AT    SLFG         GF+                    PP    T   AG    +N     +TAM  Y+N+SLEELR EDYQ  +  GP     P    T SLFGSAP       GLFGA AP          + FGAAPA+A G  TATG
Sbjct:  111 AFGANKPTSFGSFGT--------STSSGGLFG--ATNTASNPFGGAT----SLFGGS-------GFSAAQQPGTTVKFN--------PPTGSDTMVKAGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGR-KGPT---NPMAAATGSLFGSAPATSSTATGLFGAAAPNSSFSFGQTKSTFGAAPAAAGGFGTATG 277
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BLAST of mRNA_P-wetherbeei_contig8852.2.1 vs. uniprot
Match: A0A8J9RNK2_9CHLO (Nuclear pore complex protein Nup98-Nup96 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RNK2_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 5.290e-5
Identity = 40/87 (45.98%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:  700 VHTQDSAGTKALM--NVVTAMPAYQNRSLEELRWEDYQRA----KGVGPPPQPLPQQQPTA-SLFGSAPRA----GGGLFGAPAPAP 927
            V +  S G K  +  N ++AMP YQN+  EELRWEDYQ       G  P  QP P  QP A S+FG AP+A    G   FG+ +PAP
Sbjct:  198 VDSSTSGGQKQTIFFNSISAMPQYQNKCPEELRWEDYQAGVKGNTGAAPAAQPGPFGQPAAPSIFGKAPQASSPFGQTTFGSTSPAP 284
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BLAST of mRNA_P-wetherbeei_contig8852.2.1 vs. uniprot
Match: A0A4Z2FC61_9TELE (Nuclear pore complex protein Nup98-Nup96 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2FC61_9TELE)

HSP 1 Score: 57.0 bits (136), Expect = 6.230e-5
Identity = 75/204 (36.76%), Postives = 85/204 (41.67%), Query Frame = 1 
Query:  427 SLAFGAPAPXXXGLFGTGGATSTFGRTTTGSLFGQPAPAPSASPFGQATQQGSSLFGXXXXXXXXXGFATGXXXXXXXXXXXXXXXXXAPPVHTQD--SAGTKALMNV----VTAMPAYQNRSLEELRWEDYQRAKGVGPPPQPLPQQQPTASLFGSAP---RAGGGLFGAPAPAP--------AAFGAAPASAFGTTATGAGG 987
            S AFGA  P   G FGT         TT G LFG      S +PFG A    +SLFG         GF                     PP  T     AG    +N     +TAM  Y+N+SLEELR EDYQ  +  GP     P   PT S+FG+A     A  GLFGA AP            FGAA  +A G  A  AGG
Sbjct:  108 SNAFGAQKPTTFGSFGT--------STTAGGLFGXXXXXXS-NPFGGAAAGVASLFGGS-------GFTAAQQQPGTTVKFN-------PPTGTDTMVKAGVTTSINTKHQCITAMKEYENKSLEELRMEDYQAGR-KGPA---NPMAAPTGSMFGAAAVTSSAATGLFGAAAPNTNFSFGQNKTTFGAAAPAAAGFGAAAAGG 284
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BLAST of mRNA_P-wetherbeei_contig8852.2.1 vs. uniprot
Match: UPI00187CF99C (nuclear pore complex protein Nup98-Nup96 isoform X1 n=5 Tax=Acanthopagrus latus TaxID=8177 RepID=UPI00187CF99C)

HSP 1 Score: 56.6 bits (135), Expect = 9.230e-5
Identity = 76/200 (38.00%), Postives = 89/200 (44.50%), Query Frame = 1 
Query:  433 AFGAPAPXXXGLFGTGGATSTFGRTTTGSLFGQPAPAPSASPFGQATQQGSSLFGXXXXXXXXXGFATGXXXXXXXXXXXXXXXXXAPPV--HTQDSAGTKALMNV----VTAMPAYQNRSLEELRWEDYQRAKGVGPPPQPLPQQQPTASLFGSAPRAGG---GLFGAPAPAPA--------AFGAAPASAFGT-TATG 978
            AFGA  P   G FGT         T++G LFG  A   +++PFG AT    SLFG         GF+                    PP    T   AG    +N     +TAM  Y+N+SLEELR EDYQ  +  GP     P    T SLFGSAP       GLFGA AP  +         FGAAPA+  G  TATG
Sbjct:  111 AFGANKPTSFGSFGT--------STSSGGLFG--ATNTASNPFGGAT----SLFGGS-------GFSAAQQPGTTVKFN--------PPTGSDTMVKAGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGR-KGPT---NPMAAATGSLFGSAPATSSTATGLFGAAAPNSSFSFGQNKTTFGAAPAATGGFGTATG 277
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig8852.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V0PJ83_9CHLO1.100e-648.35Peptidase S59 domain-containing protein n=1 Tax=Ra... [more]
A0A6A0A546_HAELA1.530e-649.45Nuclear pore complex NUP98A isoform X1 isoform B n... [more]
A0A3Q3E3G4_9LABR7.610e-636.68Nuclear pore complex protein Nup98-Nup96 n=1 Tax=L... [more]
A0A3Q3KX26_9LABR7.660e-636.68Nuclear pore complex protein Nup98-Nup96 n=5 Tax=L... [more]
A0A671V005_SPAAU1.760e-538.50Nuclear pore complex protein Nup98-Nup96 n=6 Tax=S... [more]
A0A8J9RNK2_9CHLO5.290e-545.98Nuclear pore complex protein Nup98-Nup96 n=1 Tax=C... [more]
A0A4Z2FC61_9TELE6.230e-536.76Nuclear pore complex protein Nup98-Nup96 n=1 Tax=L... [more]
UPI00187CF99C9.230e-538.00nuclear pore complex protein Nup98-Nup96 isoform X... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig8852contigP-wetherbeei_contig8852:492..2045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1359
Hectar predicted targeting categoryother localisation
Exons2
Cds size1359
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683187062.8859854-CDS-P-wetherbeei_contig8852:491..11871683187062.8859854-CDS-P-wetherbeei_contig8852:491..1187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8852 492..1187 +
1683187062.8985887-CDS-P-wetherbeei_contig8852:1382..20451683187062.8985887-CDS-P-wetherbeei_contig8852:1382..2045Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig8852 1383..2045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig8852.2.1prot_P-wetherbeei_contig8852.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig8852 492..2045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig8852.2.1

>prot_P-wetherbeei_contig8852.2.1 ID=prot_P-wetherbeei_contig8852.2.1|Name=mRNA_P-wetherbeei_contig8852.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=453bp
FGQPQQQQQQGAGGAFGGGSTFGGGGGTGGGLFGSGGTTAAPFGGGGGTS
AFGGTGTSTAPTSGFGGFGTTTASNTTATAGFGGGFGTTPSTAAGGGSGG
LFGQPVAPAPVAGFGGFGAAPAPSPFSGTAGASAFGGGGAGGSLAFGAPA
PAGSGLFGTGGATSTFGRTTTGSLFGQPAPAPSASPFGQATQQGSSLFGG
GGGGAAGGGFATGGFGGFGTSSGFTTGAFGAPPVHTQDSAGTKALMNVVT
AMPAYQNRSLEELRWEDYQRAKGVGPPPQPLPQQQPTASLFGSAPRAGGG
LFGAPAPAPAAFGAAPASAFGTTATGAGGAAGGFGGFGSASRGLFGAPAP
AQAPFGFGGTPAGGTTAAGTGTTFGGFGTTGVGGGGGGGLFGSTAAGSTF
GGFGQPQQQQQQQQRPGGTFGFGAPAPAPASTFGTSNGGLFGGGGGGQVG
AFG
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mRNA from alignment at P-wetherbeei_contig8852:492..2045+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig8852.2.1 ID=mRNA_P-wetherbeei_contig8852.2.1|Name=mRNA_P-wetherbeei_contig8852.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1554bp|location=Sequence derived from alignment at P-wetherbeei_contig8852:492..2045+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGGTCAACCCCAGCAGCAACAGCAACAAGGGGCCGGAGGCGCATTTGG
CGGAGGCAGCACATTTGGCGGTGGCGGCGGCACTGGCGGCGGCTTGTTTG
GTAGCGGCGGGACGACCGCAGCGCCATTTGGGGGCGGCGGCGGGACTTCA
GCTTTTGGCGGCACCGGCACGAGCACGGCCCCGACATCGGGCTTTGGGGG
CTTTGGCACCACCACCGCGAGCAACACGACGGCGACTGCAGGCTTTGGAG
GCGGCTTCGGCACGACCCCATCGACGGCGGCGGGCGGCGGCAGCGGCGGC
CTCTTTGGCCAGCCCGTGGCGCCAGCGCCGGTGGCCGGCTTTGGCGGCTT
CGGCGCGGCTCCGGCGCCGAGCCCCTTCAGCGGTACAGCGGGCGCCTCCG
CTTTCGGCGGCGGCGGCGCTGGCGGCTCCCTCGCTTTCGGTGCCCCGGCG
CCGGCCGGCAGTGGCCTCTTTGGGACGGGCGGCGCGACGTCCACCTTTGG
CCGCACCACGACCGGAAGCCTCTTTGGGCAGCCCGCGCCGGCGCCCAGCG
CCTCGCCCTTTGGCCAGGCGACGCAGCAGGGCTCTTCGCTCTTTGGCGGC
GGAGGCGGCGGCGCGGCGGGCGGCGGGTTTGCCACCGGCGGCTTTGGCGG
CTTCGGCACGTCGAGCGGCTTCACCACCGGCGCGTTCGGTGCGCCGGTTG
CCGTGCCCGCCCCGTCGCCGTTTGGCGGCAGCAGCACCGGGATCTTTGGC
GCGCCCGCGCCAGCGCCGGGTGCGTTCGGCACGACCGCAACCGGCGGCTT
TGGCTTCGGCGGCGCGCAGCCCTCCGCGCTGCAGCAGGGCGGGGCTGGCT
TCGGCACGGGCCAGAACACGCAGGCAGCGCCGCTGTTCCAGCCAGTGCAC
ACGCAGGATTCGGCGGGCACAAAGGCCCTCATGAATGTCGTCACGGCCAT
GCCAGCGTATCAGAACCGCTCCCTCGAGGAGCTCCGCTGGGAGGACTACC
AGCGCGCCAAGGGCGTCGGCCCGCCCCCGCAGCCGCTGCCACAGCAGCAG
CCGACGGCGTCGCTTTTCGGGTCGGCTCCTCGCGCCGGTGGCGGCCTGTT
TGGCGCGCCGGCGCCGGCACCGGCCGCGTTCGGCGCGGCACCCGCGTCAG
CGTTCGGCACGACCGCCACAGGCGCCGGCGGCGCCGCCGGCGGGTTCGGA
GGATTTGGTAGTGCCTCGCGGGGTCTGTTTGGAGCGCCCGCGCCGGCACA
GGCGCCGTTTGGCTTCGGCGGCACGCCCGCCGGCGGGACAACGGCGGCCG
GGACGGGGACGACGTTCGGCGGCTTTGGCACGACAGGTGTGGGCGGCGGT
GGCGGCGGCGGACTCTTCGGATCCACCGCTGCCGGATCGACTTTTGGTGG
GTTCGGCCAGCCCCAGCAGCAGCAGCAGCAGCAGCAGCGTCCTGGTGGGA
CTTTCGGCTTCGGCGCGCCGGCCCCAGCCCCCGCATCGACGTTTGGTACA
TCCAATGGCGGCCTCTTCGGCGGCGGCGGCGGTGGCCAGGTGGGCGCCTT
TGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig8852:492..2045+

>mRNA_P-wetherbeei_contig8852.2.1 ID=mRNA_P-wetherbeei_contig8852.2.1|Name=mRNA_P-wetherbeei_contig8852.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1359bp|location=Sequence derived from alignment at P-wetherbeei_contig8852:492..2045+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGGTCAACCCCAGCAGCAACAGCAACAAGGGGCCGGAGGCGCATTTGG
CGGAGGCAGCACATTTGGCGGTGGCGGCGGCACTGGCGGCGGCTTGTTTG
GTAGCGGCGGGACGACCGCAGCGCCATTTGGGGGCGGCGGCGGGACTTCA
GCTTTTGGCGGCACCGGCACGAGCACGGCCCCGACATCGGGCTTTGGGGG
CTTTGGCACCACCACCGCGAGCAACACGACGGCGACTGCAGGCTTTGGAG
GCGGCTTCGGCACGACCCCATCGACGGCGGCGGGCGGCGGCAGCGGCGGC
CTCTTTGGCCAGCCCGTGGCGCCAGCGCCGGTGGCCGGCTTTGGCGGCTT
CGGCGCGGCTCCGGCGCCGAGCCCCTTCAGCGGTACAGCGGGCGCCTCCG
CTTTCGGCGGCGGCGGCGCTGGCGGCTCCCTCGCTTTCGGTGCCCCGGCG
CCGGCCGGCAGTGGCCTCTTTGGGACGGGCGGCGCGACGTCCACCTTTGG
CCGCACCACGACCGGAAGCCTCTTTGGGCAGCCCGCGCCGGCGCCCAGCG
CCTCGCCCTTTGGCCAGGCGACGCAGCAGGGCTCTTCGCTCTTTGGCGGC
GGAGGCGGCGGCGCGGCGGGCGGCGGGTTTGCCACCGGCGGCTTTGGCGG
CTTCGGCACGTCGAGCGGCTTCACCACCGGCGCGTTCGGTGCGCCGCCAG
TGCACACGCAGGATTCGGCGGGCACAAAGGCCCTCATGAATGTCGTCACG
GCCATGCCAGCGTATCAGAACCGCTCCCTCGAGGAGCTCCGCTGGGAGGA
CTACCAGCGCGCCAAGGGCGTCGGCCCGCCCCCGCAGCCGCTGCCACAGC
AGCAGCCGACGGCGTCGCTTTTCGGGTCGGCTCCTCGCGCCGGTGGCGGC
CTGTTTGGCGCGCCGGCGCCGGCACCGGCCGCGTTCGGCGCGGCACCCGC
GTCAGCGTTCGGCACGACCGCCACAGGCGCCGGCGGCGCCGCCGGCGGGT
TCGGAGGATTTGGTAGTGCCTCGCGGGGTCTGTTTGGAGCGCCCGCGCCG
GCACAGGCGCCGTTTGGCTTCGGCGGCACGCCCGCCGGCGGGACAACGGC
GGCCGGGACGGGGACGACGTTCGGCGGCTTTGGCACGACAGGTGTGGGCG
GCGGTGGCGGCGGCGGACTCTTCGGATCCACCGCTGCCGGATCGACTTTT
GGTGGGTTCGGCCAGCCCCAGCAGCAGCAGCAGCAGCAGCAGCGTCCTGG
TGGGACTTTCGGCTTCGGCGCGCCGGCCCCAGCCCCCGCATCGACGTTTG
GTACATCCAATGGCGGCCTCTTCGGCGGCGGCGGCGGTGGCCAGGTGGGC
GCCTTTGGC
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