mRNA_P-wetherbeei_contig8842.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig8842.2.1
Unique Name	mRNA_P-wetherbeei_contig8842.2.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

[Close]

BLAST of mRNA_P-wetherbeei_contig8842.2.1 vs. uniprot
Match: A0A836CEN0_9STRA (Fibronectin type-III domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEN0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 8.470e-14
Identity = 94/355 (26.48%), Postives = 157/355 (44.23%), Query Frame = 1

Query:    1 MSVTLSSVAVTTDDYAVLSVSDVRCTSVTLYWKNMSANAATFRILQG--DDRTTALSGVSVDGKATTSQTIRGLTSGTAYKFVLQRDEFGTYVDQTSNQSGSAYALVNTLHTSLSLAVASSSGTVQWPQTYSGASYTLTYIQLQDGVSTGSSTSITDSNIVLSAGVHKATLAS-LSKNTSYEVALYVNESQPNGTASVLLDSKTLTTSDSVQMAISGIYASYANLSWSGDGSTYYRIIDDSGKVRVSPTLDSVA--SVTNLTPGTTYNLILQALQLDGT-YATQSWSTVVARSTALTVAGVGSSSISLQWNSLYDAAHYSVRYTTDQTTWKEYSVTSFTDVAAVLTSLVPGTAYT 1047
            M+  +++V   TD YA +S+      S+ + + N S+ AA FR++ G   +       V V   A  +  + GLT G  Y F LQR E   YVDQ     G       TL   + ++ ++ S  V W      A+     +    G   G+  ++  +    S+   K  LAS L     Y V +   E    G   VLL S    TS    + +  + AS A +SW+G+ S+ YR+++      ++  L   A  S+ NL   T Y++ +++L++DG+ +  +  ++    S+ LTV   G+  I+L+W   Y  A Y + Y             + +  +  ++ L P TAYT
Sbjct:    1 MAAPIATVNFKTDAYAAMSIDTCTFGSIGVQFTNPSSAAARFRVMAGAIGEAMAPAGEVLVQPGAKATAVVTGLTPGRPYTFGLQRSENAAYVDQVQ---GKGNPTKTTLSVDIKVSTSADSALVSWTDLAEAAAIGFEVVLTPAG---GAKKTLAGTPYARSS--LKNLLASDLVTGVQYTVEVIAVE----GANRVLLGSVPFKTSAGAAIKVGTVRASTAYISWTGEESSVYRLVEGKTGALLADGLRGGAGLSLKNLVKATDYSVAMESLRVDGSSWLREGSASFTTASSLLTVKSFGTGFIALEWTQAYAGASYVLAYAAGAAPAVPLGTLTTSATSMTVSGLKPSTAYT 343

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig8842.2.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig8842.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CEN0_9STRA	8.470e-14	26.48	Fibronectin type-III domain-containing protein n=1...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig8842	contig	P-wetherbeei_contig8842:1482..2531 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	7668.SPU_001610-tr
Preferred name	TNN
PFAMs	EGF_2,Fibrinogen_C,fn3
Model size	1050
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K06252
KEGG Pathway	ko04151,ko04510,ko04512,ko05165,ko05206,map04151,map04510,map04512,map05165,map05206
Hectar predicted targeting category	other localisation
GOs	GO:0000902,GO:0000904,GO:0001503,GO:0001649,GO:0001764,GO:0002076,GO:0003674,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0006928,GO:0007155,GO:0007160,GO:0007275,GO:0007399,GO:0007409,GO:0008037,GO:0008038,GO:0008150,GO:0008285,GO:0009653,GO:0009966,GO:0009968,GO:0009986,GO:0009987,GO:0010646,GO:0010648,GO:0010721,GO:0016043,GO:0016049,GO:0016477,GO:0022008,GO:0022610,GO:0023051,GO:0023057,GO:0030030,GO:0030111,GO:0030154,GO:0030178,GO:0030182,GO:0030278,GO:0030279,GO:0030334,GO:0030336,GO:0030424,GO:0030425,GO:0031012,GO:0031175,GO:0031589,GO:0032501,GO:0032502,GO:0032879,GO:0032989,GO:0032990,GO:0033267,GO:0033688,GO:0033689,GO:0036477,GO:0040007,GO:0040011,GO:0040012,GO:0040013,GO:0042127,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043679,GO:0044297,GO:0044302,GO:0044306,GO:0044421,GO:0044456,GO:0044463,GO:0044464,GO:0044877,GO:0045202,GO:0045595,GO:0045596,GO:0045667,GO:0045668,GO:0048468,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050839,GO:0051093,GO:0051179,GO:0051239,GO:0051241,GO:0051270,GO:0051271,GO:0051674,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0060828,GO:0061564,GO:0065007,GO:0070593,GO:0071840,GO:0090090,GO:0097442,GO:0097447,GO:0097457,GO:0097458,GO:0098793,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0150034,GO:1905239,GO:1905240,GO:1990026,GO:1990138,GO:2000026,GO:2000145,GO:2000146,GO:2001222,GO:2001223
Exons	1
Evalue	8.9e-12
EggNOG OGs	KOG1225@1\|root,KOG1225@2759\|Eukaryota,39REY@33154\|Opisthokonta,3BF4W@33208\|Metazoa,3CXDP@33213\|Bilateria
Description	negative regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
Cds size	1050
COG category	T
BRITE	ko00000,ko00001,ko00536,ko04516

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683187062.495852-CDS-P-wetherbeei_contig8842:1481..2531	1683187062.495852-CDS-P-wetherbeei_contig8842:1481..2531	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig8842 1482..2531 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig8842.2.1	prot_P-wetherbeei_contig8842.2.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig8842 1482..2531 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig8842:1482..2531+
coding sequence from alignment at P-wetherbeei_contig8842:1482..2531+

protein sequence of mRNA_P-wetherbeei_contig8842.2.1

>prot_P-wetherbeei_contig8842.2.1 ID=prot_P-wetherbeei_contig8842.2.1|Name=mRNA_P-wetherbeei_contig8842.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=350bp
MSVTLSSVAVTTDDYAVLSVSDVRCTSVTLYWKNMSANAATFRILQGDDR
TTALSGVSVDGKATTSQTIRGLTSGTAYKFVLQRDEFGTYVDQTSNQSGS
AYALVNTLHTSLSLAVASSSGTVQWPQTYSGASYTLTYIQLQDGVSTGSS
TSITDSNIVLSAGVHKATLASLSKNTSYEVALYVNESQPNGTASVLLDSK
TLTTSDSVQMAISGIYASYANLSWSGDGSTYYRIIDDSGKVRVSPTLDSV
ASVTNLTPGTTYNLILQALQLDGTYATQSWSTVVARSTALTVAGVGSSSI
SLQWNSLYDAAHYSVRYTTDQTTWKEYSVTSFTDVAAVLTSLVPGTAYTI

mRNA from alignment at P-wetherbeei_contig8842:1482..2531+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig8842.2.1 ID=mRNA_P-wetherbeei_contig8842.2.1|Name=mRNA_P-wetherbeei_contig8842.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1050bp|location=Sequence derived from alignment at P-wetherbeei_contig8842:1482..2531+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGTGACTCTGAGTTCGGTTGCCGTCACGACGGATGATTATGCGGT
CCTCAGCGTGAGTGATGTCCGGTGCACGTCTGTCACCTTGTACTGGAAGA
ACATGAGTGCAAACGCGGCAACATTTCGGATCCTCCAAGGCGATGATCGT
ACCACGGCGCTTTCTGGCGTGTCTGTCGACGGGAAAGCCACGACATCACA
GACGATTCGTGGGCTCACTTCGGGGACCGCGTACAAGTTTGTTCTCCAGC
GTGACGAATTTGGCACGTACGTCGACCAGACCTCGAACCAGAGCGGTAGT
GCGTACGCGTTGGTCAATACACTGCACACGTCTCTGTCTCTGGCCGTTGC
GTCGAGTTCCGGAACGGTTCAATGGCCACAGACGTACTCCGGGGCCTCGT
ACACGCTCACGTACATTCAGCTCCAGGATGGTGTGTCCACAGGCTCGTCT
ACCAGCATTACGGATTCAAACATTGTTCTGAGTGCCGGTGTCCACAAGGC
TACTCTTGCCAGTCTCTCCAAGAATACTTCCTACGAGGTGGCGCTGTATG
TCAATGAATCTCAGCCCAACGGTACCGCATCTGTGCTATTGGATTCCAAG
ACCCTGACGACGTCCGACAGCGTTCAGATGGCCATCTCTGGTATTTACGC
ATCTTATGCCAACCTGTCATGGTCGGGCGACGGATCCACGTACTACCGAA
TCATTGACGACAGTGGTAAGGTGCGGGTTTCTCCCACGTTGGACTCGGTC
GCCTCGGTCACGAATCTGACGCCCGGGACGACGTACAACCTCATCCTCCA
AGCTCTGCAATTGGACGGCACGTACGCGACTCAGTCGTGGTCCACCGTCG
TCGCACGCTCAACGGCACTCACCGTTGCGGGCGTCGGTAGTAGTTCGATC
TCGCTGCAATGGAACTCGCTGTACGATGCGGCCCATTATTCGGTCCGCTA
CACGACAGACCAAACAACGTGGAAGGAGTACTCGGTCACATCGTTCACGG
ACGTTGCCGCGGTCCTCACCAGTCTCGTTCCGGGAACCGCGTACACAATC

Coding sequence (CDS) from alignment at P-wetherbeei_contig8842:1482..2531+

>mRNA_P-wetherbeei_contig8842.2.1 ID=mRNA_P-wetherbeei_contig8842.2.1|Name=mRNA_P-wetherbeei_contig8842.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1050bp|location=Sequence derived from alignment at P-wetherbeei_contig8842:1482..2531+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGTGTGACTCTGAGTTCGGTTGCCGTCACGACGGATGATTATGCGGT
CCTCAGCGTGAGTGATGTCCGGTGCACGTCTGTCACCTTGTACTGGAAGA
ACATGAGTGCAAACGCGGCAACATTTCGGATCCTCCAAGGCGATGATCGT
ACCACGGCGCTTTCTGGCGTGTCTGTCGACGGGAAAGCCACGACATCACA
GACGATTCGTGGGCTCACTTCGGGGACCGCGTACAAGTTTGTTCTCCAGC
GTGACGAATTTGGCACGTACGTCGACCAGACCTCGAACCAGAGCGGTAGT
GCGTACGCGTTGGTCAATACACTGCACACGTCTCTGTCTCTGGCCGTTGC
GTCGAGTTCCGGAACGGTTCAATGGCCACAGACGTACTCCGGGGCCTCGT
ACACGCTCACGTACATTCAGCTCCAGGATGGTGTGTCCACAGGCTCGTCT
ACCAGCATTACGGATTCAAACATTGTTCTGAGTGCCGGTGTCCACAAGGC
TACTCTTGCCAGTCTCTCCAAGAATACTTCCTACGAGGTGGCGCTGTATG
TCAATGAATCTCAGCCCAACGGTACCGCATCTGTGCTATTGGATTCCAAG
ACCCTGACGACGTCCGACAGCGTTCAGATGGCCATCTCTGGTATTTACGC
ATCTTATGCCAACCTGTCATGGTCGGGCGACGGATCCACGTACTACCGAA
TCATTGACGACAGTGGTAAGGTGCGGGTTTCTCCCACGTTGGACTCGGTC
GCCTCGGTCACGAATCTGACGCCCGGGACGACGTACAACCTCATCCTCCA
AGCTCTGCAATTGGACGGCACGTACGCGACTCAGTCGTGGTCCACCGTCG
TCGCACGCTCAACGGCACTCACCGTTGCGGGCGTCGGTAGTAGTTCGATC
TCGCTGCAATGGAACTCGCTGTACGATGCGGCCCATTATTCGGTCCGCTA
CACGACAGACCAAACAACGTGGAAGGAGTACTCGGTCACATCGTTCACGG
ACGTTGCCGCGGTCCTCACCAGTCTCGTTCCGGGAACCGCGTACACAATC